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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915182
Clone id YMU001_000067_E03
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTACTCATGGCCAGATGGTGACGTCACTCTCTCTCAAATTTTGAACTCTGAGCCTGTGC
CCACAGATAACAGGAATGGAGTCGATTATGGTGTGTATGTAAATGAGAGACCGAAATATT
GGCCGATGGAGTCTGTCTCGCAAGATATGTCTCTATCATTGGCAACTCATGGTGAGACAT
CATCAAAGCCATTGCAAGCCACAGACAAATCACCCTTTCGGACAGAATTGCTTGACGAAG
AACTCAACTCAAGAATTGAGCAGAGATTAAGCCCATCAAAGCTCAATGATATTTGGAGTA
AAGTTGTAGAGAGATGTCAATCAAACCAACTGAGGCAGTTACTCTATGCAAGTGTGCGCC
TGATTTCAATCTCAATCTCAGAAGTGGATGCTGTTGTACACCTGGAAGTTTGCAACCCTG
ACGATAATGCAAGCTGTGAGCGATCGCAGAAAAGGATTGCGACTCTCTTTGAGA
■■Homology search results ■■ -
sp_hit_id Q8NB25
Definition sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens
Align length 78
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915182|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E03.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens GN=FAM184A...    31   2.4  
sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291...    30   4.2  
sp|P07266|MRS1_YEAST Mitochondrial RNA-splicing protein MRS1 OS=...    29   9.3  

>sp|Q8NB25|F184A_HUMAN Protein FAM184A OS=Homo sapiens GN=FAM184A PE=2
            SV=3
          Length = 1140

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/78 (21%), Positives = 37/78 (47%)
 Frame = +3

Query: 192  LQATDKSPFRTELLDEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRLISI 371
            L+   +S  +  L +++LN R+E+ L     + +  K + R   N+  +LL      + +
Sbjct: 912  LRIRSESNQQIRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQV 971

Query: 372  SISEVDAVVHLEVCNPDD 425
            S+ E++    +    P+D
Sbjct: 972  SLEEMEEKYLMRESKPED 989


>sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608
           OS=Dictyostelium discoideum GN=DDB_G0291608 PE=4 SV=1
          Length = 919

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 135 QTPSANISVSHLHTHHNRLHSCYL 64
           QTP   I +S++H HH ++HS +L
Sbjct: 586 QTPQFYIPISNIHRHHQQIHSPHL 609


>sp|P07266|MRS1_YEAST Mitochondrial RNA-splicing protein MRS1
           OS=Saccharomyces cerevisiae GN=MRS1 PE=1 SV=2
          Length = 363

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 312 RCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPD--DNASCERSQKRIA 461
           + QSN L  LLYA  + + ++ +   A +   VCNP+  D   CE +  R++
Sbjct: 161 KLQSNILEHLLYAKCQGVYVTSTNEKARLLAAVCNPEFIDTFWCELTPIRVS 212
tr_hit_id A9SKU4
Definition tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 159
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915182|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E03.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A5B4C5|A5B4C5_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|O64728|O64728_ARATH Similar to prokaryotic DNA polymerase III...    51   3e-05
tr|A7QCE6|A7QCE6_VITVI Chromosome undetermined scaffold_77, whol...    51   3e-05
tr|Q9M9R7|Q9M9R7_ARATH F14L17.24 protein OS=Arabidopsis thaliana...    49   1e-04
tr|A9U4M5|A9U4M5_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|Q9SN33|Q9SN33_ARATH Putative uncharacterized protein F28A21.2...    42   0.020
tr|A7PCL7|A7PCL7_VITVI Chromosome chr17 scaffold_12, whole genom...    42   0.020
tr|A5ANL7|A5ANL7_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A9REP7|A9REP7_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.045
tr|Q6YPF5|Q6YPF5_ORYSJ Os08g0120200 protein OS=Oryza sativa subs...    40   0.058
tr|B8BAD4|B8BAD4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A3BP49|A3BP49_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.058
tr|Q5XV23|Q5XV23_ARATH Putative uncharacterized protein OS=Arabi...    37   0.49 
tr|Q2QTM2|Q2QTM2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    36   0.84 
tr|A3CGJ3|A3CGJ3_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A2ZJN8|A2ZJN8_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|Q07XT1|Q07XT1_SHEFN Putative uncharacterized protein OS=Shewa...    35   1.4  
tr|Q24GK4|Q24GK4_TETTH CAF1 family ribonuclease containing prote...    34   3.2  
tr|Q3KKB3|Q3KKB3_PSEPF AmpD OS=Pseudomonas fluorescens (strain P...    34   4.2  
tr|B4M8Y8|B4M8Y8_DROVI GJ18215 OS=Drosophila virilis GN=GJ18215 ...    34   4.2  
tr|A7QDG1|A7QDG1_VITVI Chromosome chr10 scaffold_81, whole genom...    33   5.4  
tr|B4J3A8|B4J3A8_DROGR GH14805 OS=Drosophila grimshawi GN=GH1480...    33   5.4  
tr|B6GZB0|B6GZB0_PENCH Pc12g12940 protein OS=Penicillium chrysog...    33   5.4  
tr|A8H9Z6|A8H9Z6_SHEPA Putative uncharacterized protein OS=Shewa...    33   7.1  
tr|Q1WGA8|Q1WGA8_ORYSI Putative NBS-LRR disease resistance prote...    33   7.1  
tr|Q4D8V3|Q4D8V3_TRYCR Putative uncharacterized protein (Fragmen...    33   7.1  
tr|Q17KK2|Q17KK2_AEDAE Putative uncharacterized protein OS=Aedes...    33   7.1  
tr|B3W802|B3W802_LACCB Putative uncharacterized protein OS=Lacto...    33   9.2  
tr|B3M053|B3M053_DROAN GF17761 OS=Drosophila ananassae GN=GF1776...    33   9.3  

>tr|A9SKU4|A9SKU4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_229978 PE=4 SV=1
          Length = 1473

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
 Frame = +3

Query: 45   NSEPVPTDNRNGVDYGVY---------VNERPKYWPMESVSQDMSLSLATHGETSSKPLQ 197
            +S+ VP D  + +   V+         V+  P   P    + +   S   H  T S   Q
Sbjct: 1088 HSQQVPNDVSSALSQPVHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQ 1147

Query: 198  ATDKSPFRTELL-----DEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRL 362
            A D S      L      + + SR  + L+   + DIW KV++ C+SN LRQLL +   L
Sbjct: 1148 ADDTSLRSASSLVLFDPSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQLLSSQGTL 1207

Query: 363  ISISIS--EVDAVVHLEVCNPDDNASCERSQKRIATLFE 473
            +++S++  E  AV H+E  +P   A  ER +      F+
Sbjct: 1208 MALSVARDETFAVAHVEFRSPGHKARAERLRSSTCHAFQ 1246


>tr|A5B4C5|A5B4C5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013864 PE=4 SV=1
          Length = 545

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 PKYWPMESVSQDMSLSLATHGETSSKPL--QATDKSPFRTELLDEELNSRIEQRLSPSKL 284
           PK     S  Q   LSL      ++KP+  Q  +     +   D  + + + + ++  KL
Sbjct: 91  PKSAEKNSTHQGDLLSLVDGFNFNAKPVHSQFRNSGASASSHDDVMMGNLVFRSINADKL 150

Query: 285 NDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERSQKRIAT 464
           +DIW + +ERC S  LRQLL+A  +L+SIS +E   V ++   + D     ER    I  
Sbjct: 151 DDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAERFLSSITN 210

Query: 465 LFE 473
             E
Sbjct: 211 SIE 213


>tr|O64728|O64728_ARATH Similar to prokaryotic DNA polymerase III
            gamma subunit (STICHEL) OS=Arabidopsis thaliana GN=STI
            PE=1 SV=2
          Length = 1218

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 30/68 (44%), Positives = 34/68 (50%)
 Frame = +3

Query: 270  SPSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERSQ 449
            S  KLNDIW K +ERC S  LRQLLY   +LISIS  E   V ++     D     ER  
Sbjct: 908  SSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGENDIKLRAERFL 967

Query: 450  KRIATLFE 473
              I    E
Sbjct: 968  SSITNSIE 975


>tr|A7QCE6|A7QCE6_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035364001 PE=4 SV=1
          Length = 1054

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = +3

Query: 234 DEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVC 413
           D  + + + + ++  KL+DIW + +ERC S  LRQLL+A  +L+SIS +E   V ++   
Sbjct: 746 DVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQ 805

Query: 414 NPDDNASCERSQKRIATLFE 473
           + D     ER    I    E
Sbjct: 806 DEDIKCRAERFLSSITNSIE 825


>tr|Q9M9R7|Q9M9R7_ARATH F14L17.24 protein OS=Arabidopsis thaliana
            GN=F14L17.24 PE=1 SV=1
          Length = 1071

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 28/65 (43%), Positives = 35/65 (53%)
 Frame = +3

Query: 279  KLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERSQKRI 458
            KLNDIW K V+RC S  L+QLLYA  +L+SIS  E   V ++     +  A  ER    I
Sbjct: 876  KLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAERFVSSI 935

Query: 459  ATLFE 473
                E
Sbjct: 936  TNSIE 940


>tr|A9U4M5|A9U4M5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173641 PE=4 SV=1
          Length = 523

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +3

Query: 180 SSKPLQATDKSPFRTELLDEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVR 359
           +SKPL+   ++    ++  EE+ +R+            W++V+    S  LRQLL+   R
Sbjct: 68  TSKPLRHEPETTLDFQVFGEEILARL------------WNRVLSEITSRSLRQLLHTDAR 115

Query: 360 LIS--ISISEVDAVVHLEVCNPDDNASCERSQKRIATLFE 473
           L++   +I    A+V LE  +P D    ERS + I   F+
Sbjct: 116 LVAAGAAIDGSRAIVALEFDHPRDKHKAERSWRSICIAFQ 155


>tr|Q9SN33|Q9SN33_ARATH Putative uncharacterized protein F28A21.230
            (Putative uncharacterized protein AT4g18820)
            OS=Arabidopsis thaliana GN=F28A21.230 PE=2 SV=1
          Length = 1057

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 25/92 (27%), Positives = 48/92 (52%)
 Frame = +3

Query: 198  ATDKSPFRTELLDEELNSRIEQRLSPSKLNDIWSKVVERCQSNQLRQLLYASVRLISISI 377
            ++D +  R+  LD     R + R +   + +IW +V+E+ + N LR+ LY   R++S+++
Sbjct: 822  SSDAAGGRSSGLDRR---RGDSRKNRPAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLNL 878

Query: 378  SEVDAVVHLEVCNPDDNASCERSQKRIATLFE 473
                  VHL   +P   ++ E+ +  I   FE
Sbjct: 879  GSA-PTVHLMFSSPLTKSTAEKFRSHIMQAFE 909


>tr|A7PCL7|A7PCL7_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015918001
           PE=4 SV=1
          Length = 931

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 279 KLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERSQKRI 458
           +L  +W +  E CQS+ L+  L    +L S+ +S+  AV  LE  +PD  +  E+S K I
Sbjct: 651 QLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLI 710

Query: 459 AT 464
           A+
Sbjct: 711 AS 712


>tr|A5ANL7|A5ANL7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010442 PE=4 SV=1
          Length = 1057

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 279 KLNDIWSKVVERCQSNQLRQLLYASVRLISISISEVDAVVHLEVCNPDDNASCERSQKRI 458
           +L  +W +  E CQS+ L+  L    +L S+ +S+  AV  LE  +PD  +  E+S K I
Sbjct: 734 QLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLI 793

Query: 459 AT 464
           A+
Sbjct: 794 AS 795


>tr|A9REP7|A9REP7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_112792 PE=4 SV=1
          Length = 366

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
 Frame = +3

Query: 117 YWPMESVSQDMSLSLATHGETSSKPLQATDKSPFRTELLDEELNSRIEQRLSPSKLNDIW 296
           + P E+ S D++L+ A     +S+PL+   ++    ++  ++            +L ++W
Sbjct: 249 FLPSEA-STDVALTSARPSTKTSEPLRRASETTLGFQIFRDD------------ELVELW 295

Query: 297 SKVVERCQSNQLRQLLYASVRLISISISEVD-AVVHLEVCNPDDNASCERSQKRIATLFE 473
             V+    S  LRQLL    +L++  ++    AVV LE  +P D    ERS + I++ F+
Sbjct: 296 RAVLWNITSRNLRQLLQTHGQLVAGGVANGSLAVVSLEFDHPRDKYKAERSWRTISSTFQ 355