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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915184
Clone id YMU001_000067_E05
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCACAGAGGCTCTTCACTGCCAAGACACTAATCAACATAGAAATCTCGTCTCTCATGTCT
TTTTACACAAGCACTTGAATGATATCCAGATGGTTAAATATTCTACTACAGAGGCCTTCT
TGAAGCCTGGCTATCCACAAACGACTACTTATTGCAGGATTACACCTACCTGATGAGGTC
CAAGTAAATATACTTCTTGTGGCTTTACCTGAAACATGGCAGTCCTTTGTTTCTCAGCAT
TCTAATAAACCTATCTTGGCATTAACTACTTTAATTGCTAATATAAGGGTGGAAGATCAG
ATACGCAACAAGGGAAAGAGTCCCTACATCGTCAAGCAATTCTCCGTCTGTTCCTCTTGT
GATGCTTGCTGGAGGTTTGTGGTCCCTTCCCCGTTTCTGCTCCAAGCAATTCAGTTCATG
CCAATCTCAGCTTCTCAACTCACATCCTACGCAATCTCGCCCATCCTTCTTTTCACAGAA
ATCGCAAACTTTGATGCAGCCTATCCTTAATGCCTCTCGTTTTCACAATCCTATGCAAGC
TTCCACGTCCAATAATTGTGTTCCAGCATGTAC
■■Homology search results ■■ -
sp_hit_id P16658
Definition sp|P16658|SEN2_YEAST tRNA-splicing endonuclease subunit SEN2 OS=Saccharomyces cerevisiae
Align length 53
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915184|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E05.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16658|SEN2_YEAST tRNA-splicing endonuclease subunit SEN2 OS=...    32   2.3  

>sp|P16658|SEN2_YEAST tRNA-splicing endonuclease subunit SEN2
           OS=Saccharomyces cerevisiae GN=SEN2 PE=1 SV=1
          Length = 377

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 400 LQAIQFMPISASQLTSYA----ISPILLFTEIANFDAAYP*CLSFSQSYASFH 546
           L++++ MP+ A  LT       ISP  L  ++  FDA Y    SF +SY  +H
Sbjct: 215 LESLELMPVEAMFLTFALPVLDISPACLAGKLFQFDAKYKDIHSFVRSYVIYH 267
tr_hit_id Q7XBD8
Definition tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly protein OS=Zea mays
Align length 55
Score (bit) 43.5
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915184|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E05.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly prote...    44   0.008
tr|Q10LX1|Q10LX1_ORYSJ Retrotransposon protein, putative, Ty1-co...    38   0.35 
tr|A5BB58|A5BB58_VITVI Putative uncharacterized protein OS=Vitis...    38   0.45 
tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol...    35   2.3  
tr|A8NW88|A8NW88_COPC7 Putative uncharacterized protein OS=Copri...    35   2.9  
tr|Q93YB6|Q93YB6_TOBAC PBF68 protein OS=Nicotiana tabacum GN=pbf...    34   5.0  
tr|Q2QT52|Q2QT52_ORYSJ Retrotransposon protein, putative, Ty1-co...    34   5.0  
tr|A5BYN0|A5BYN0_VITVI Putative uncharacterized protein OS=Vitis...    34   5.0  
tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-co...    33   8.6  
tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.6  

>tr|Q7XBD8|Q7XBD8_MAIZE Putative retrotransposon RIRE1 poly protein
           OS=Zea mays GN=Z013I05_10 PE=4 SV=1
          Length = 1309

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 157 GLHLPDEVQVNILLVALPETWQSFV-SQHSNKPILALTTLIANIRVEDQIRNKGK 318
           G  LPD  QVN +L  LP +W+ FV S+   K  + LT L A I VE++ R+  K
Sbjct: 166 GCVLPDSFQVNAILAKLPPSWRDFVTSRRHMKKQMTLTELSAAINVEERARSSNK 220


>tr|Q10LX1|Q10LX1_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g21419 PE=4 SV=1
          Length = 991

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
 Frame = +1

Query: 19  AKTLINIEISSLMSFYTST*MISRW-LNILLQRPS*SLA-IHKRLLIAGLHLPDEVQVNI 192
           AK  ++   +S MS+  S  M +RW + +LL R +  +  + K L      LPD+     
Sbjct: 134 AKFGVSDAAASCMSWSNS--MTTRWSMTVLLWRQAHEIQMLAKELENNNCELPDKFMAGG 191

Query: 193 LLVALPETWQSFVSQHSNK-PILALTTLIANIRVEDQIR---NKGKSPYIVKQFSVCSSC 360
           ++  LP +W  F +   +K     LT LI ++ VE++ R   N GK    VK  S C +C
Sbjct: 192 IIAKLPPSWSDFATSLKHKRQEFGLTDLIGSLGVEEKARAKDNLGKKIEGVKG-SKCHTC 250


>tr|A5BB58|A5BB58_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036207 PE=4 SV=1
          Length = 1096

 Score = 37.7 bits (86), Expect = 0.45
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 145 LLIAGLHLPDEVQVNILLVALPETWQSFVSQHSNK-PILALTTLIANIRVEDQIRNK 312
           L I  + LP+   V  L+  LPE+W+ + +   +K   ++L  +I +IR+E+Q RN+
Sbjct: 138 LAIEDIKLPEPFMVGYLVETLPESWKDYKNNMKHKMKQMSLEDVIIHIRIEEQNRNR 194


>tr|Q94FM0|Q94FM0_CITPA Pol polyprotein OS=Citrus paradisi GN=pol
           PE=4 SV=1
          Length = 701

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 133 IHKRLLIAGLHLPDEVQVNILLVALPETWQSFVS--QHSNKPILALTTLIANIRVEDQIR 306
           I   +L  G+HL +  QV  ++  LP  W+ F S  +H  K  + +  L+  +R+E+  R
Sbjct: 169 ILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKE-MNIEGLVVKLRIEEDNR 227

Query: 307 N 309
           N
Sbjct: 228 N 228


>tr|A8NW88|A8NW88_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04172 PE=4 SV=1
          Length = 1591

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +1

Query: 127 LAIHKRLLIAGLHLPDEVQVNILLVALPETWQSFVSQH----SNKPILALTTLIANIRVE 294
           L +  +L   G  + D+  + IL+ +LPE+W S+ S +     N P ++   L+A I +E
Sbjct: 394 LRLQAQLHNLGNLISDDDFLMILITSLPESWDSYTSAYLGANGNSPTISSFELVA-ILIE 452

Query: 295 DQIRNKGKS 321
           ++ R KG++
Sbjct: 453 EERRRKGRN 461


>tr|Q93YB6|Q93YB6_TOBAC PBF68 protein OS=Nicotiana tabacum GN=pbf68
           PE=2 SV=1
          Length = 594

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 13/56 (23%), Positives = 34/56 (60%)
 Frame = +1

Query: 145 LLIAGLHLPDEVQVNILLVALPETWQSFVSQHSNKPILALTTLIANIRVEDQIRNK 312
           L+ +G+ + +   ++ ++  LP +W+   ++  ++ + +L  L+ ++RVED  RN+
Sbjct: 418 LMASGIWIDENFHISAIIAKLPPSWKDCRTRLMHENVPSLDMLMHHLRVEDDCRNR 473


>tr|Q2QT52|Q2QT52_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g21830 PE=4 SV=1
          Length = 634

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +1

Query: 139 KRLLIAGLHLPDEVQVNILLVALPETWQSF--VSQHSNKPILALTTLIANIRVEDQIRNK 312
           K L +    LPD+     ++V LP +W+SF  V +H  + + ++  LIA++ VE++ R K
Sbjct: 28  KELELLKCVLPDKFVAGCIIVKLPPSWRSFGTVLKH-KRQVYSVEGLIASLDVEEKAREK 86


>tr|A5BYN0|A5BYN0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031523 PE=4 SV=1
          Length = 272

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 145 LLIAGLHLPDEVQVNILLVALPETWQSFVSQHSNKPI-LALTTLIANIRVEDQIRNK 312
           L I  + LP+   V  L+  L E+W+ + +   +K   ++L  +I +IR+E+Q RNK
Sbjct: 45  LAIKDIKLPEPFVVGYLVETLLESWKDYKNNMKHKKKQMSLEDVIIHIRIEEQNRNK 101


>tr|Q10LP7|Q10LP7_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g22100 PE=4 SV=1
          Length = 1075

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 166 LPDEVQVNILLVALPETWQSFVSQHSNK-PILALTTLIANIRVEDQIRNK 312
           LPD+ QV +++  LP +W+ F +   ++   + +  L+A++ VE++ R K
Sbjct: 176 LPDKFQVGMVIAKLPPSWRDFATALKHRMEEMTMDDLVASLDVEEKARAK 225


>tr|A3A7P3|A3A7P3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006815 PE=4 SV=1
          Length = 277

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 166 LPDEVQVNILLVALPETWQSFVSQ-HSNKPILALTTLIANIRVEDQIRNK 312
           LPD+ QV +++  LP +W+ F +     +  + +  L+A++ VE++ R K
Sbjct: 144 LPDKFQVGMVIAKLPPSWRDFATALKHRREEMTMDDLVASLDVEEKARAK 193