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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915187
Clone id YMU001_000067_E08
Library
Length 184
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTCGCAAGGCTGCTAACTACTGGGCTATAAATCTACACACGGATGTCTATGGGTACAGC
CATTATTGCCTTGTCACGGACACTGTCTAATTTGAAAGAAGGTATGCTTACCACTGGTAT
AATACCTGAACGGATTGATATAATCACCGGTTGGGGACGACGGAGCCGGGTTACAGGATC
CTCT
■■Homology search results ■■ -
sp_hit_id Q9SSF9
Definition sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana
Align length 47
Score (bit) 66.6
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915187|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E08.
         (184 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protei...    67   2e-11
sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protei...    65   3e-11
sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protei...    37   0.039
sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protei...    32   0.97 

>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein
           At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
          Length = 855

 Score = 66.6 bits (161), Expect(2) = 2e-11
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS GTA+IALSRTL+  ++ ML +G  P RIDI+TGWGRRSRVTG+S
Sbjct: 760 MSEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTS 806



 Score = 21.6 bits (44), Expect(2) = 2e-11
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 7   KAANYWAINLH 39
           K+ +YW INLH
Sbjct: 748 KSYSYWLINLH 758


>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein
           At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
          Length = 860

 Score = 65.5 bits (158), Expect(2) = 3e-11
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS GTA+ ALSRTL+  ++ ML +G  P RIDI+TGWGRRSRVTG+S
Sbjct: 765 MSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTS 811



 Score = 22.3 bits (46), Expect(2) = 3e-11
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 7   KAANYWAINLH 39
           K+ +YW INLH
Sbjct: 753 KSCSYWLINLH 763


>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial OS=Arabidopsis thaliana
           GN=EMB2217 PE=2 SV=1
          Length = 836

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITG 151
           +S+G A+IA+  TL   ++ ML  G++P RI ++TG
Sbjct: 715 LSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTG 750


>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic OS=Arabidopsis thaliana
           GN=At2g31400 PE=2 SV=1
          Length = 918

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTG 178
           MS G A   +   L N++  +     +P+ + I+TGWG+ S+V G
Sbjct: 789 MSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVG 833
tr_hit_id A9SK65
Definition tr|A9SK65|A9SK65_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 71.2
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915187|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_E08.
         (184 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SK65|A9SK65_PHYPA Predicted protein (Fragment) OS=Physcomit...    71   2e-11
tr|Q2QLK4|Q2QLK4_ORYSJ Os12g0638900 protein OS=Oryza sativa subs...    66   6e-10
tr|A7QI29|A7QI29_VITVI Chromosome chr17 scaffold_101, whole geno...    65   8e-10
tr|B4FPZ9|B4FPZ9_MAIZE Putative uncharacterized protein OS=Zea m...    65   1e-09
tr|Q2QNK3|Q2QNK3_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    37   0.65 
tr|Q0IML9|Q0IML9_ORYSJ Os12g0562300 protein (Fragment) OS=Oryza ...    37   0.65 
tr|A7PJW2|A7PJW2_VITVI Chromosome chr12 scaffold_18, whole genom...    36   0.85 
tr|Q7XLD5|Q7XLD5_ORYSJ Os04g0612800 protein OS=Oryza sativa subs...    35   1.5  
tr|A3AXC0|A3AXC0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A2XXF8|A2XXF8_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A9U2H0|A9U2H0_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  
tr|A7Q0P9|A7Q0P9_VITVI Chromosome chr7 scaffold_42, whole genome...    33   7.2  
tr|A3CIG3|A3CIG3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.4  

>tr|A9SK65|A9SK65_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_131253 PE=4 SV=1
          Length = 560

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MSMGTA++ALSRTLS  +E ML TG+ PERI+IITGWG+ SRV G+S
Sbjct: 465 MSMGTALVALSRTLSEFREKMLYTGVAPERIEIITGWGKHSRVPGAS 511


>tr|Q2QLK4|Q2QLK4_ORYSJ Os12g0638900 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0638900 PE=4 SV=1
          Length = 859

 Score = 65.9 bits (159), Expect(2) = 6e-10
 Identities = 33/47 (70%), Positives = 37/47 (78%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS GTA+ ALSRTL+     +LT G  PERIDI+TGWGRRSRVTGSS
Sbjct: 764 MSEGTAVTALSRTLAWFHRQILTMGKCPERIDIVTGWGRRSRVTGSS 810



 Score = 20.8 bits (42), Expect(2) = 6e-10
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 7   KAANYWAINLH 39
           K  +YW INLH
Sbjct: 752 KDPSYWLINLH 762


>tr|A7QI29|A7QI29_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000070001
           PE=4 SV=1
          Length = 875

 Score = 65.1 bits (157), Expect(2) = 8e-10
 Identities = 31/47 (65%), Positives = 37/47 (78%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS GTA+ ALSRTL+     ML +G +P RIDI+TGWGRRSRVTG+S
Sbjct: 780 MSDGTAVTALSRTLAWFHREMLVSGTVPSRIDIVTGWGRRSRVTGAS 826



 Score = 21.2 bits (43), Expect(2) = 8e-10
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 7   KAANYWAINLH 39
           K++ YW INLH
Sbjct: 768 KSSCYWLINLH 778


>tr|B4FPZ9|B4FPZ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 96

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 33/47 (70%), Positives = 37/47 (78%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS GTA+ ALSRTL+     +LT G  PERIDI+TGWGRRSRVTGSS
Sbjct: 1   MSEGTAVTALSRTLAWFHRQVLTLGTGPERIDIVTGWGRRSRVTGSS 47


>tr|Q2QNK3|Q2QNK3_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g37550 PE=4 SV=2
          Length = 295

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS G A   +   L N++  +     +PE + I+TGWG+ SR+ G+S
Sbjct: 178 MSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSRIAGAS 224


>tr|Q0IML9|Q0IML9_ORYSJ Os12g0562300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0562300 PE=4 SV=1
          Length = 306

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITGWGRRSRVTGSS 184
           MS G A   +   L N++  +     +PE + I+TGWG+ SR+ G+S
Sbjct: 189 MSCGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSRIAGAS 235


>tr|A7PJW2|A7PJW2_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018904001
           PE=4 SV=1
          Length = 1100

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITG 151
           +S+G A++A+  TL   ++ ML  G++P RI ++TG
Sbjct: 730 LSVGAALVAVVHTLHRFRKRMLYYGVVPRRIKLVTG 765


>tr|Q7XLD5|Q7XLD5_ORYSJ Os04g0612800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0070C17.14 PE=4 SV=2
          Length = 784

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITG 151
           +S+G A++A   TL   ++ ML  G++P RI ++TG
Sbjct: 665 LSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 700


>tr|A3AXC0|A3AXC0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_015442 PE=4 SV=1
          Length = 756

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITG 151
           +S+G A++A   TL   ++ ML  G++P RI ++TG
Sbjct: 622 LSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 657


>tr|A2XXF8|A2XXF8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17364 PE=4 SV=1
          Length = 847

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 44  MSMGTAIIALSRTLSNLKEGMLTTGIIPERIDIITG 151
           +S+G A++A   TL   ++ ML  G++P RI ++TG
Sbjct: 713 LSVGAALVATVHTLHRFRKRMLYYGVVPRRIKLVTG 748