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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915191
Clone id YMU001_000067_F01
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTTGATAGGGACGGTAGGACCAGTGCTGCAGTTAGCTTGCTCGGTCCCACGAGGTCCG
GAGAGCCGTCGCTATAAATGCGAGAAGACGCTTTATTTGGCTCGGGAATGCGAAGTCAAA
GGCAAAACAAGGACTCACAAGAGGTCAAAGGCAAAGGCAAGCTTGACATAGATAATCGTG
ATAAAAATGTGACAGAGGAGATTGGCATGGCTTACGTGGTGATGGCCACAGTGGCGACGA
TGCCAGATTTCTACTCGGGTGGTGGTT
■■Homology search results ■■ -
sp_hit_id Q839T5
Definition sp|Q839T5|RUVB_ENTFA Holliday junction ATP-dependent DNA helicase ruvB OS=Enterococcus faecalis
Align length 55
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915191|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_F01.
         (267 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q839T5|RUVB_ENTFA Holliday junction ATP-dependent DNA helicas...    30   5.0  
sp|Q6FK47|IPI1_CANGA Pre-rRNA-processing protein IPI1 OS=Candida...    29   6.5  
sp|Q96S37|S22AC_HUMAN Solute carrier family 22 member 12 OS=Homo...    29   8.4  
sp|B5FFN5|ACCD_VIBFM Acetyl-coenzyme A carboxylase carboxyl tran...    29   8.4  
sp|Q5E456|ACCD_VIBF1 Acetyl-coenzyme A carboxylase carboxyl tran...    29   8.4  
sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein...    29   8.5  

>sp|Q839T5|RUVB_ENTFA Holliday junction ATP-dependent DNA helicase
           ruvB OS=Enterococcus faecalis GN=ruvB PE=3 SV=1
          Length = 338

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 111 RSQRQNKDSQEVKGKGKLDIDNRDKNVT----EEIGMAYVVMATVATMPDFYSGG 263
           R  ++ +D  +V+  GK+D    DK +T    +  G+ YV    + TM D Y GG
Sbjct: 225 RLLKRVRDFAQVQSDGKIDRAIADKALTLLQVDHQGLDYVDQKLLKTMIDLYGGG 279


>sp|Q6FK47|IPI1_CANGA Pre-rRNA-processing protein IPI1 OS=Candida
           glabrata GN=IPI1 PE=3 SV=1
          Length = 334

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  LFGSGMRSQRQNKDSQEVKGKGKLDIDNRDKNV 191
           LF   ++S   NKD+  V     LD+++R +NV
Sbjct: 264 LFDKQLKSSSSNKDNSSVSSSDALDVESRIRNV 296


>sp|Q96S37|S22AC_HUMAN Solute carrier family 22 member 12 OS=Homo
           sapiens GN=SLC22A12 PE=1 SV=1
          Length = 553

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   LIGTVGPVLQLACSVPRGPESRRYKCEK 87
           ++G++ P   LA S+P GP  R ++C +
Sbjct: 63  ILGSLSPEALLAISIPPGPNQRPHQCRR 90


>sp|B5FFN5|ACCD_VIBFM Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta OS=Vibrio fischeri (strain
           MJ11) GN=accD PE=3 SV=1
          Length = 294

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 1   RLIGTVGPVLQLACSVPRGPESRRYKCEKTLY---LARECEVKGKTRTHKRSKAKASL 165
           ++  T   V     S+P G  ++   CE+ LY   L R  EV  K   H R KA+  L
Sbjct: 6   KIFNTSNIVSSRKASIPEGVWTKCTSCEQVLYSAELERNLEVCPKCDHHMRMKARKRL 63


>sp|Q5E456|ACCD_VIBF1 Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta OS=Vibrio fischeri (strain ATCC
           700601 / ES114) GN=accD PE=3 SV=1
          Length = 294

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 1   RLIGTVGPVLQLACSVPRGPESRRYKCEKTLY---LARECEVKGKTRTHKRSKAKASL 165
           ++  T   V     S+P G  ++   CE+ LY   L R  EV  K   H R KA+  L
Sbjct: 6   KIFNTSNIVSSRKASIPEGVWTKCTSCEQVLYSAELERNLEVCPKCDHHMRMKARKRL 63


>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33
           OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2
           SV=1
          Length = 601

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 3   VDRDGRTSAAVSLLGPTRSGEPSL 74
           +DR GR  AA SL+ P  +G PS+
Sbjct: 500 IDRGGRAPAARSLMSPATTGAPSI 523
tr_hit_id B6KGY3
Definition tr|B6KGY3|B6KGY3_TOXGO ATPase, AAA family domain-containing protein OS=Toxoplasma gondii ME49
Align length 61
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915191|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_F01.
         (267 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KGY3|B6KGY3_TOXGO ATPase, AAA family domain-containing prot...    36   1.1  
tr|Q9LY81|Q9LY81_ARATH Putative uncharacterized protein F18O22_2...    34   3.2  
tr|A7EG80|A7EG80_SCLS1 Phosphoserine phosphatase OS=Sclerotinia ...    34   4.1  
tr|A6SIF0|A6SIF0_BOTFB Putative uncharacterized protein OS=Botry...    34   4.1  
tr|A2TQ79|A2TQ79_9FLAO DNA polymerase III subunit gamma/tau OS=D...    34   4.1  

>tr|B6KGY3|B6KGY3_TOXGO ATPase, AAA family domain-containing protein
           OS=Toxoplasma gondii ME49 GN=TGME49_047390 PE=4 SV=1
          Length = 3668

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 18  RTSAAVSLLGPTRSGEPSL*MREDALFGSGMRSQRQNKDSQEVKGKGKLDIDNRDKNVTE 197
           R +AAV+     R+ E S     D LFGSG   + + ++  E + +G  D+D  ++   E
Sbjct: 538 RGNAAVASSRHERNDEQSHLWGSDTLFGSGEEEEEEEEEEDEEEDEGDADVDEEEEESEE 597

Query: 198 E 200
           E
Sbjct: 598 E 598


>tr|Q9LY81|Q9LY81_ARATH Putative uncharacterized protein F18O22_270
           (At5g14480) OS=Arabidopsis thaliana GN=F18O22_270 PE=2
           SV=1
          Length = 387

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 234 PLWPSPRKPCQSPLSHFYHDYLCQACLC 151
           PLW SP KP Q+ L H+YH+    A LC
Sbjct: 72  PLWESPPKPFQT-LPHYYHENASMATLC 98


>tr|A7EG80|A7EG80_SCLS1 Phosphoserine phosphatase OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
           GN=SS1G_04321 PE=4 SV=1
          Length = 482

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 267 NHHPSRNLASSPLWPSPRKPCQSPLSHFYHDYLCQACL 154
           N  P R L++ PL P P  P   PL H Y  Y+ Q CL
Sbjct: 146 NLAPVRTLSNFPLEPPPPDP--EPLDHLYGSYISQLCL 181


>tr|A6SIF0|A6SIF0_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_12230
           PE=4 SV=1
          Length = 482

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 267 NHHPSRNLASSPLWPSPRKPCQSPLSHFYHDYLCQACL 154
           N  P R L++ PL P P  P   PL H Y  Y+ Q CL
Sbjct: 146 NLAPVRTLSNFPLEPPPPDP--EPLDHLYGSYISQLCL 181


>tr|A2TQ79|A2TQ79_9FLAO DNA polymerase III subunit gamma/tau
           OS=Dokdonia donghaensis MED134 GN=MED134_06494 PE=4 SV=1
          Length = 643

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 48  PTRSGEPSL*MREDALFGSGMRSQRQNKDSQEVKGKGKLDIDNRDKNVTEEIGM 209
           PT    PSL +R+D + G  ++  ++ K+ ++ K   K+D+ N       EI M
Sbjct: 479 PTTQATPSLTIRKDRVSGLSLKGLQRKKELEQKKADKKVDVQNLPSEPFTEIAM 532