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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915196
Clone id YMU001_000067_F07
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATGAGCCATCATCTCTCTCCTAGGCAGGCGCCTACATCGCCCCCTTTTGAGGATGCTCA
GATGCACACAGAGTTCGGCAACACTGCGATGGAGCAGATGTTCCAGGACGTCTCAAATAT
GTTGTTGCAAGTTAAGCACACAAATCAGACGTTGCTCAGCTTCATTCTTCCAACCCTCAC
ACAGTACACGTACAGACTCAAGAGTCCGGCCAAAACCTTTCTCCGGACTCTCTACAGAGG
ACATCCTCACGTGGCTTGACCACTTTGATAATGTAGCTAGCACTCAATTAAAACGCTACT
AATACAGAATTTTGGGCACCAAGACATTACACAATCAACACTCGAGCAACTCAAATTGCT
CAAACAAAATCAGCATGAGCTAGTGGCACAACTTGCCGTCCGGATGAATCAACTCCTTCT
TCGTGCGGATCTTGCAATGTCAAAAGCGATGAAACTCCTCTTTTTATGGCCAAGACTACG
GCATGACATAGCCCGTAGAGTGCA
■■Homology search results ■■ -
sp_hit_id Q8JZM8
Definition sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus
Align length 116
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915196|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_F07.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1         31   2.9  
sp|Q63661|MUC4_RAT Mucin-4 OS=Rattus norvegicus GN=Muc4 PE=1 SV=2      31   3.8  
sp|Q7V5X1|PUR7_PROMM Phosphoribosylaminoimidazole-succinocarboxa...    30   6.4  
sp|A2C740|PUR7_PROM3 Phosphoribosylaminoimidazole-succinocarboxa...    30   6.4  
sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3...    30   8.4  

>sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1
          Length = 3443

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
 Frame = +1

Query: 145  SDVAQLHSSNPHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NATNTEFWAPR 324
            S V   H S   T  V    S QN+S  S   TSS+ L+TL          T++      
Sbjct: 941  STVITTHGSTLATTQVSLTPSSQNMSTVSAPITSSQILSTLRQSQHTGSKGTSSNHQTTT 1000

Query: 325  HYTINTRATQIA---QTKSA*ASGTTCRPDESTPSSCGSCNVKSDETPLFMAKTTA 483
               + T     A   Q ++  +S  T  PD +T S   S +  S  T   +  T++
Sbjct: 1001 TPVVTTSTPSAASRDQIQTETSSLRTISPDGTTTSHASSMSSSSPNTTHLLITTSS 1056



 Score = 29.6 bits (65), Expect = 8.4
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
 Frame = +1

Query: 169  SNPHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NATNTEF---WAPRHYTIN 339
            S P T       S QN+S  S   TSS+ L+TL          T++       P   T  
Sbjct: 1480 STPATTQTSLTPSSQNMSTVSAPITSSQILSTLRQSQHTGSKGTSSNHQTTTTPVVTTST 1539

Query: 340  TRATQIAQTKSA*ASGTTCRPDESTPSSCGSCNVKSDETPLFMAKTTA 483
              AT   Q ++  +S  T  P E+T S   S +     T   + +T++
Sbjct: 1540 PSATSRDQIQTETSSLRTISPGETTTSHASSLSSSGPSTTNMLTRTSS 1587


>sp|Q63661|MUC4_RAT Mucin-4 OS=Rattus norvegicus GN=Muc4 PE=1 SV=2
          Length = 2344

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
 Frame = +1

Query: 169 SNPHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NAT--NTEFWAPRHYTINT 342
           S P T  +    S Q +SP S   TS++ +TTL          T  N +   P   T +T
Sbjct: 387 STPATTEISVTPSTQKMSPVSTFSTSTQEITTLSQSQHTGGMKTTRNPQRTTPTEVTTST 446

Query: 343 -RATQIAQTKSA*ASGTTCRPDESTPSSCGSCNVKSDETP 459
             A+   Q +    S  T  PD +T S   S +  S   P
Sbjct: 447 LSASSSDQVQVETTSRATLSPDTTTTSHAPSVSSSSPSPP 486



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +1

Query: 169 SNPHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NAT--NTEFWAPRHYTINT 342
           S P T  +    S Q +SP S   TS++ +TTL          T  N +       T   
Sbjct: 634 STPATTEISVTPSTQKMSPVSTFSTSTQEITTLSQSQHTGGMKTTRNPQTTGTTEVTTTL 693

Query: 343 RATQIAQTKSA*ASGTTCRPDESTPS 420
            A+   Q ++  +S TT  PD +T S
Sbjct: 694 SASSSDQVQAETSSQTTLSPDTTTTS 719



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 25/96 (26%), Positives = 38/96 (39%)
 Frame = +1

Query: 169 SNPHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NATNTEFWAPRHYTINTRA 348
           S P T  +    S Q +SP S   TS++ +TTL         + +T           T  
Sbjct: 177 STPATTEISVTPSTQKMSPVSTFSTSTQEITTLS-------QSQHTGGMKTTRNPQTTGT 229

Query: 349 TQIAQTKSA*ASGTTCRPDESTPSSCGSCNVKSDET 456
           T++  T SA +S       ESTP +      ++  T
Sbjct: 230 TEVTTTLSASSSDHPTSSPESTPGNTAPRTTETSTT 265


>sp|Q7V5X1|PUR7_PROMM
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           OS=Prochlorococcus marinus (strain MIT 9313) GN=purC
           PE=3 SV=1
          Length = 242

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 308 NFGHQDITQSTLEQLKLLKQNQHELVAQLAVRMNQLLL 421
           N G   +++S L+ L L+   Q   + QLA R+NQLLL
Sbjct: 128 NLGDPLLSESRLQLLGLISSQQRLEIEQLARRVNQLLL 165


>sp|A2C740|PUR7_PROM3
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           OS=Prochlorococcus marinus (strain MIT 9303) GN=purC
           PE=3 SV=1
          Length = 242

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 308 NFGHQDITQSTLEQLKLLKQNQHELVAQLAVRMNQLLL 421
           N G   +++S L+ L L+   Q   + QLA R+NQLLL
Sbjct: 128 NLGDPLLSESRLQLLGLISSQQRLEIEQLARRVNQLLL 165


>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
           subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
          Length = 1382

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 142 KSDVAQLHSSNPHTVHVQTQESGQNLSPDSLQRTSSRGL 258
           KS  A  H+S  H ++  ++E  +NL+ D +QR S+R L
Sbjct: 285 KSGNALFHASTLHRLYHLSREMRKNLTQDEMQRMSTRVL 323
tr_hit_id B6Y1G1
Definition tr|B6Y1G1|B6Y1G1_ANATH Chromosome segregation and condensation protein ScpA OS=Anaerocellum thermophilum DSM 6725
Align length 53
Score (bit) 33.1
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915196|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_F07.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6Y1G1|B6Y1G1_ANATH Chromosome segregation and condensation p...    33   7.6  
tr|B4N4N8|B4N4N8_DROWI GK12426 OS=Drosophila willistoni GN=GK124...    33   7.6  
tr|A0DM21|A0DM21_PARTE Chromosome undetermined scaffold_56, whol...    33   7.6  
tr|Q6CNJ9|Q6CNJ9_KLULA KLLA0E11947p OS=Kluyveromyces lactis GN=K...    33   7.8  

>tr|B6Y1G1|B6Y1G1_ANATH Chromosome segregation and condensation
           protein ScpA OS=Anaerocellum thermophilum DSM 6725
           GN=AtheDRAFT_1312 PE=4 SV=1
          Length = 236

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +2

Query: 287 IKTLLIQNFGHQDITQSTLEQLKLLKQNQHELVAQLAVRMNQLLLRADLAMSK 445
           I   L +N+ +++  + T +   LLK+N+ ELVAQL ++    L RA LA+S+
Sbjct: 100 IAVYLKENYPYRECYRKTNQDYLLLKENKKELVAQLDIKK---LCRAYLAISQ 149


>tr|B4N4N8|B4N4N8_DROWI GK12426 OS=Drosophila willistoni GN=GK12426
           PE=4 SV=1
          Length = 986

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 92  EQMFQDVSNMLLQVKHTNQTLLSFILPTLTQYTYRLKSPAKTFLR 226
           ++   DVSN+L Q K  NQT +   LP   +  Y+L S  KTF R
Sbjct: 20  DRSHDDVSNILQQWKTNNQTQMQMQLPYSNEQAYKLNS--KTFTR 62


>tr|A0DM21|A0DM21_PARTE Chromosome undetermined scaffold_56, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00018306001 PE=4 SV=1
          Length = 589

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -3

Query: 241 SSVESPEKGFGRTLESVRVLCEGWKNE---AEQRLICV 137
           S  E  ++GF + LE V+ LCE + NE   +E+RLIC+
Sbjct: 166 SKFEDQKQGFQQELERVQKLCEEFSNEIKDSEKRLICL 203


>tr|Q6CNJ9|Q6CNJ9_KLULA KLLA0E11947p OS=Kluyveromyces lactis
           GN=KLLA0E11947g PE=4 SV=1
          Length = 614

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +1

Query: 175 PHTVHVQTQESGQNLSPDSLQRTSSRGLTTLIM*LALN*NATNTEFWAPRH-YTINTRAT 351
           P   H+Q Q+  Q      L+  S +G  +  +      +  + +   PRH  ++NT  +
Sbjct: 36  PKAGHLQQQQQQQQQQASVLRTRSRKGTFSSKIGKLFGVSKVSPDEDLPRHNVSVNTSTS 95

Query: 352 QIAQTKSA*A-SGTTCRPDESTPSSCGSCNVKS 447
           Q+ Q  SA + +GTT  P  S PSS  S ++ S
Sbjct: 96  QVPQATSAGSGTGTTASP-PSPPSSSSSSSLSS 127