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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915221
Clone id YMU001_000067_H11
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGAGGCATAACTGGAGATACTTCATCAGTCAAGTGTGGAAAAGCCGATAATGCTTCGTG
TGGACAGCGGAGAGGATGCAGCAAGTATCCAGCCGCAAGGTGCACTTGCTATGGGATGAG
GAATCGGTGAGAAAGGTGGTTGAACAGTGAGAAGACGCTTTGAACCACTCTGTGATGAAG
ATGAAGAAAGCCCAGAGAATGAAAATGATGAAAAGTACTTTGAGGATTATTACTGTGGGG
AGGAGGATGAAGGTGCATATGAAGGTGGCGAAGAGTGCGAAGACCTGTGTGATATGTTTA
GAGATATGGGATTTGGGGAGCATAGCAAGGGCTTGCCAAAAGGGGAGGGTAAGCATATCA
GATTCTTTTATGAAGATGGTGATGAGATAATGGAGGCTATGGTGGTGAATGGTGAGGAGG
A
■■Homology search results ■■ -
sp_hit_id Q9JM96
Definition sp|Q9JM96|BORG4_MOUSE Cdc42 effector protein 4 OS=Mus musculus
Align length 38
Score (bit) 30.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915221|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_H11.
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JM96|BORG4_MOUSE Cdc42 effector protein 4 OS=Mus musculus G...    31   2.3  
sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sap...    30   5.0  
sp|P29836|ICP0_BHV1K Trans-acting transcriptional protein ICP0 O...    30   5.0  
sp|P29128|ICP0_BHV1J Trans-acting transcriptional protein ICP0 O...    30   5.0  
sp|P27765|AMID_PSECL Amidase OS=Pseudomonas chlororaphis PE=1 SV=3     30   5.0  

>sp|Q9JM96|BORG4_MOUSE Cdc42 effector protein 4 OS=Mus musculus
           GN=Cdc42ep4 PE=1 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 115 PIASAPCGWILAASSPLSTRSIIGFSTLD**SISSYAS 2
           P A    GW + A SP S RS+   +T D  S+SSY S
Sbjct: 271 PHAVEDDGWAVVAPSPSSARSVGSHTTRDSSSLSSYTS 308


>sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo
           sapiens GN=KRTAP5-8 PE=2 SV=2
          Length = 187

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2   GGITGDTSSVKCGKADNASCG-QRRGCSKYPAARCTCY 112
           GG  G   S    K D  SCG  + GC     ++C+CY
Sbjct: 54  GGSKGGRGSCGGSKGDCGSCGGSKGGCGSCGCSQCSCY 91


>sp|P29836|ICP0_BHV1K Trans-acting transcriptional protein ICP0
           OS=Bovine herpesvirus 1.2 (strain K22) GN=BICP0 PE=4
           SV=1
          Length = 676

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 139 PPFSPIPHPIASAPCGWILAASSPLSTRS 53
           P   P P  +A  PCG   A S+P S+RS
Sbjct: 360 PAVQPAPRSLARRPCGRAAAVSAPPSSRS 388


>sp|P29128|ICP0_BHV1J Trans-acting transcriptional protein ICP0
           OS=Bovine herpesvirus 1.1 (strain Jura) GN=BICP0 PE=4
           SV=1
          Length = 676

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 139 PPFSPIPHPIASAPCGWILAASSPLSTRS 53
           P   P P  +A  PCG   A S+P S+RS
Sbjct: 360 PAVQPAPRSLARRPCGRAAAVSAPPSSRS 388


>sp|P27765|AMID_PSECL Amidase OS=Pseudomonas chlororaphis PE=1 SV=3
          Length = 506

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   GGITGDTSSVKCGKADNASCGQRRGCSKYPAARCTCYGMR 121
           G  +G  + V  G+ D A  G + G  + P+A C  YGM+
Sbjct: 172 GSSSGSAALVASGEVDIAVGGDQGGSIRIPSAFCGTYGMK 211
tr_hit_id B6ATM5
Definition tr|B6ATM5|B6ATM5_9RHOB Amidase OS=Rhodobacterales bacterium HTCC2083
Align length 40
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915221|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_H11.
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ATM5|B6ATM5_9RHOB Amidase OS=Rhodobacterales bacterium HTCC...    36   0.83 

>tr|B6ATM5|B6ATM5_9RHOB Amidase OS=Rhodobacterales bacterium
           HTCC2083 GN=amdA PE=4 SV=1
          Length = 790

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   GGITGDTSSVKCGKADNASCGQRRGCSKYPAARCTCYGMR 121
           G   G  + V  G+ D A  G + G  + PA+ C CYGM+
Sbjct: 457 GSSAGSAALVAAGEVDMAIAGDQGGSIRIPASNCGCYGMK 496