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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915222
Clone id YMU001_000069_A01
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGATATTAGAGAAGACAACAAGAAAGCTTTGGAGGCAGCATTGCCTGCCTTAACCATAGG
AGTTGGGACTGTCGGTACACTTTTTGGAGTTGCTGGAGGCCTGCAAGTTGTGGGATTTGC
AGCTCTTGCAAGCTTTCTCTCTCAGGGCTTCTTCTGGGCGAAGAGCAGGGAGGAGTTGTA
TCAAGAGCTGAAAGGCATAACGAACCGCCAGAAGCTTTTGGATTTTCTGGCAAGAAGAAA
TATTGTAAGAAAGGACCAGGAAGAAGAATCGAGTTTGTAGATTGTTATGTAGCTATCTTC
AGTAGCCCTTGTTTGTATCATATATCATTCTTCTGCCATCGCAGCTTCATAAACAAGAGC
TCAGCAGCACTAAAGGGCCTATCTCCATTGGTAAGATAGCTGAAGAAACTGGAATGGCAA
GTAAAGTTGCTGAGATTAAGGCCATGTAATTATTCCACTAGCAAAGGTTAGGAGTGGTAC
TTGCCCGATTCTTTACTGCTCATGATGTACATGAAGGTAGGCTTCTTCG
■■Homology search results ■■ -
sp_hit_id Q54RV3
Definition sp|Q54RV3|PAKG_DICDI Serine/threonine-protein kinase pakG OS=Dictyostelium discoideum
Align length 34
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915222|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_A01.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54RV3|PAKG_DICDI Serine/threonine-protein kinase pakG OS=Dic...    33   1.1  
sp|A4SIV8|RIMM_AERS4 Ribosome maturation factor rimM OS=Aeromona...    31   4.2  
sp|Q9JI69|ORC1_CRIGR Origin recognition complex subunit 1 OS=Cri...    31   4.2  
sp|Q9HJJ6|GATE_THEAC Glutamyl-tRNA(Gln) amidotransferase subunit...    30   7.1  
sp|P08080|HEM1_RHIME 5-aminolevulinate synthase OS=Rhizobium mel...    30   7.2  
sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattu...    30   9.4  
sp|Q6P9S0|MTSSL_MOUSE MTSS1-like protein OS=Mus musculus GN=Mtss...    30   9.4  
sp|Q765P7|MTSSL_HUMAN MTSS1-like protein OS=Homo sapiens GN=MTSS...    30   9.4  

>sp|Q54RV3|PAKG_DICDI Serine/threonine-protein kinase pakG
            OS=Dictyostelium discoideum GN=pakG PE=3 SV=1
          Length = 1179

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 123  AANPTTCRPPATPKSVPTVP-TPMVKAGNAASKA 25
            +++P+T + P TP S+PT P TP    G+ +SK+
Sbjct: 1127 SSSPSTPQKPNTPSSIPTTPTTPTTNGGSVSSKS 1160


>sp|A4SIV8|RIMM_AERS4 Ribosome maturation factor rimM OS=Aeromonas
           salmonicida (strain A449) GN=rimM PE=3 SV=1
          Length = 173

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 62  VGTVGTLFGVAGGLQVVGFAALASFLSQGFFWAKSREELYQELK 193
           +GT+GT++G+ G L+V  F  +A  +     W  ++  +++ELK
Sbjct: 7   LGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWMINQNGVWRELK 50


>sp|Q9JI69|ORC1_CRIGR Origin recognition complex subunit 1
           OS=Cricetulus griseus GN=ORC1L PE=2 SV=1
          Length = 850

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 171 SLLFAQKKP*ERKLARAANPTTCRPPATPKSVPTVPTPMVKAGNAA 34
           SLL    +P  R    A+ P+   P  TPK     PTP ++  N A
Sbjct: 424 SLLKRNSQPQSRNRRMASKPSLQTPSKTPKKTTHHPTPQIRGRNIA 469


>sp|Q9HJJ6|GATE_THEAC Glutamyl-tRNA(Gln) amidotransferase subunit E
           OS=Thermoplasma acidophilum GN=gatE PE=3 SV=1
          Length = 603

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 360 LSSTKGPISIGKIAEETGMASKVAEIKAM*LFH*QRLGVVLARFFTAHDV 509
           + ++KGP+ I  +  E   A K+ EI    ++   RLG+ L    T  D+
Sbjct: 134 IETSKGPVRISTVCLEEDAARKIEEIGNTVVYSLDRLGIPLIEISTEPDI 183


>sp|P08080|HEM1_RHIME 5-aminolevulinate synthase OS=Rhizobium
           meliloti GN=hemA PE=3 SV=2
          Length = 404

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 32  EAALPALTIGVGTVGTLFGVAGGLQVVGFAALASFL 139
           E  +  LT+  GT+G  FGV GG  + G AAL  F+
Sbjct: 232 EGLMHRLTVIEGTLGKAFGVMGG-YITGSAALCDFI 266


>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus
           norvegicus GN=Nup155 PE=1 SV=1
          Length = 1390

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 117 NPTTCRPPATPKSVPTVPTPMVKAGNAASKAFLLSSL 7
           NP++   P+     PT+ TPM   GN A +A  LS L
Sbjct: 615 NPSSLGTPSHGAQPPTMSTPMSAVGNPAMQAASLSGL 651


>sp|Q6P9S0|MTSSL_MOUSE MTSS1-like protein OS=Mus musculus GN=Mtss1l
           PE=1 SV=1
          Length = 715

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 150 KP*ERKLARAANPTTCRPPATPKSVPTVP 64
           KP  R+   +A P   RPP  P   PTVP
Sbjct: 534 KPTVRRALSSAGPIPIRPPIVPVKTPTVP 562


>sp|Q765P7|MTSSL_HUMAN MTSS1-like protein OS=Homo sapiens GN=MTSS1L
           PE=1 SV=1
          Length = 747

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 150 KP*ERKLARAANPTTCRPPATPKSVPTVP 64
           KP  R+   +A P   RPP  P   PTVP
Sbjct: 571 KPTVRRALSSAGPIPIRPPIVPVKTPTVP 599
tr_hit_id A9TX85
Definition tr|A9TX85|A9TX85_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 82
Score (bit) 72.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915222|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_A01.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TX85|A9TX85_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|A9SDB0|A9SDB0_PHYPA Predicted protein OS=Physcomitrella paten...    72   2e-11
tr|Q1Z1R2|Q1Z1R2_PHOPR Hypothetical membrane protein OS=Photobac...    37   0.81 
tr|Q6LMA6|Q6LMA6_PHOPR Hypothetical membrane protein OS=Photobac...    34   4.0  
tr|Q6MDN7|Q6MDN7_PARUW Putative ATP-binding cassette protein, na...    33   6.9  
tr|Q4P3M9|Q4P3M9_USTMA Putative uncharacterized protein OS=Ustil...    33   6.9  
tr|Q238T0|Q238T0_TETTH Putative uncharacterized protein OS=Tetra...    33   9.0  
tr|B8P3S1|B8P3S1_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.0  

>tr|A9TX85|A9TX85_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172499 PE=4 SV=1
          Length = 786

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
 Frame = +2

Query: 8   REDNK-KALEAALPALTIGVGTVGTLFGVAGGLQVVGFAALASFLSQGFFWAKSREELYQ 184
           RE+ K +AL+AA+PA+ IG G +G+L GV G  Q+VG  A ASF+S    WA  R+ L +
Sbjct: 702 RENAKYRALQAAIPAVAIGAGALGSLAGVDGAFQMVGLTATASFISYDLIWANKRKVLLE 761

Query: 185 ELKGITNRQKLLDFLARRNIVR 250
           EL  IT+ +  L +L +R IV+
Sbjct: 762 ELSRITDHKGFLRWLQKRKIVK 783


>tr|A9SDB0|A9SDB0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164294 PE=4 SV=1
          Length = 715

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = +2

Query: 23  KALEAALPALTIGVGTVGTLFGVAGGLQVVGFAALASFLSQGFFWAKSREELYQELKGIT 202
           +AL+AA P + IG G +G L GV G L++VG  A ASF+S    WA  R+EL +EL  IT
Sbjct: 637 QALQAAFPVVAIGAGALGALAGVDGALEMVGLTATASFISYELLWANKRKELVEELSKIT 696

Query: 203 NRQKLLDFLARRNIVRKD 256
           + +  L +L +R IV+ +
Sbjct: 697 DHRGFLRWLRKRKIVKDE 714


>tr|Q1Z1R2|Q1Z1R2_PHOPR Hypothetical membrane protein
            OS=Photobacterium profundum 3TCK GN=P3TCK_24095 PE=4 SV=1
          Length = 1297

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +2

Query: 83   FGVAGGLQVVGFAALASFLSQGFFWAKSREELYQELK---------GITNRQKLLDFLAR 235
            FG++GG+Q   F++ AS   QG  W+  RE L  E+K         G+    +LL   + 
Sbjct: 1096 FGISGGIQDASFSSYASIQWQGSPWSIHRETLTGEIKTETGKGIISGVGGAGRLLGLFSL 1155

Query: 236  RNIVRKDQ 259
             +I+RK Q
Sbjct: 1156 DSIMRKLQ 1163


>tr|Q6LMA6|Q6LMA6_PHOPR Hypothetical membrane protein
            OS=Photobacterium profundum GN=VV2929 PE=4 SV=1
          Length = 1296

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
 Frame = +2

Query: 83   FGVAGGLQVVGFAALASFLSQGFFWAKSREELYQELK---------GITNRQKLLDFLAR 235
            FG++ G+Q   F++ AS   QG  W+  RE L  E+K         G+    +LL   + 
Sbjct: 1096 FGISSGIQDASFSSYASIQWQGSPWSIHRETLTGEIKTETGKGIISGVGGAGRLLGLFSL 1155

Query: 236  RNIVRKDQ 259
             +I+RK Q
Sbjct: 1156 DSIMRKLQ 1163


>tr|Q6MDN7|Q6MDN7_PARUW Putative ATP-binding cassette protein, nasD
           OS=Protochlamydia amoebophila (strain UWE25) GN=nasD
           PE=3 SV=1
          Length = 246

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 47  ALTIGVGTVGTLFGVAGGLQVVGFAALASF--LSQGFFWAKSREELYQELKGITNRQKLL 220
           ALT+  G +GTL G +G  +   F  L     L +G F+A S  + Y+    +T +  LL
Sbjct: 22  ALTLKQGEIGTLIGASGSGKSTLFKILVGLLPLQEGAFYAMSHSQAYEYFAYMTQQDLLL 81


>tr|Q4P3M9|Q4P3M9_USTMA Putative uncharacterized protein OS=Ustilago
            maydis GN=UM05284.1 PE=4 SV=1
          Length = 1327

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 156  QKKP*ERKLARAANPTTCRPPATPKSVPT--VPTPMVKAGNAASK 28
            Q++P ER LA A+ PTT +P A+  +VP+    T    A +AAS+
Sbjct: 907  QREPEERPLAEASGPTTSKPDASSMTVPSSIANTLTFSATSAASR 951


>tr|Q238T0|Q238T0_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00450890 PE=4
           SV=1
          Length = 100

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 59  GVGTVGTLFGVAGGLQVVG--FAALASFLSQGFFWAKSREELYQEL-KGITNRQKLLDFL 229
           G+  +G    +   LQ++   +     FL Q  ++A++ +E +Q L KG  NRQ L DF+
Sbjct: 23  GIQNLGNTCYINSALQMLRQIYEENEQFLEQRSYFAQNLKEFFQGLSKGYVNRQLLNDFI 82

Query: 230 ARRNIV 247
            RR  +
Sbjct: 83  KRRRFL 88


>tr|B8P3S1|B8P3S1_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_101726 PE=4 SV=1
          Length = 339

 Score = 33.1 bits (74), Expect = 9.0
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 11  EDNKKALEAALPALTIGVGTVGTLFGVAGGLQVVGFAALASFLSQGFFWAKSREELYQE 187
           ED  +++EAA+  +    G + T     G   V  +     FL+ GFFW+K R++L  E
Sbjct: 143 EDPFESIEAAMVMVAFMGGIIAT-----GPRTVARYGIWLPFLTLGFFWSKPRQDLVAE 196