BP915226 |
Clone id |
YMU001_000069_A05 |
Library |
YMU01 |
Length |
441 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000069_A05. |
Accession |
BP915226 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGAAGCATACATGACATTACGCAGGTCTTCATGCTGGCAACAGAAAAGATAGGGGGTCG CTATGCTTCAAGTATCAGAGGGACTATGCACTCACAGTCCAAGGCATTTGTTGATAATCA GCACAGTTTAAAGATGTCGAAAATAAATGCACTGCTAGAACAGGAAAGCTGGGTTAGCAT GGATGCACCTGATGAGTTTCAGGCCATAGTGGACATGTTGACACATAATGATATTTCAAA AACAGAAAACTTTTCTGTTGAGGAGATAGCTGATACAGATGGCTCTTCTATTTCTAACGC TATCAGCAATGAGAATCTGAGTGCAGTGATGAAAGACGAGCCTTCTGAAGCTGGTAGTGT GATTGCAATAGAAAGTTCTCTTACTTCAGTTGACAGTGCTGGCACTACAGAGCTAAAAAC TCATGTGAATTCACAAGCGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9P1Q0 |
Definition |
sp|Q9P1Q0|VPS54_HUMAN Vacuolar protein sorting-associated protein 54 OS=Homo sapiens |
Align length |
80 |
Score (bit) |
60.1 |
E-value |
4.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SVA6 |
Definition |
tr|A9SVA6|A9SVA6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
123 |
Score (bit) |
108.0 |
E-value |
1.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915226|Adiantum capillus-veneris mRNA, clone: YMU001_000069_A05. (441 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SVA6|A9SVA6_PHYPA Predicted protein OS=Physcomitrella paten... 108 1e-22 tr|A7QC25|A7QC25_VITVI Chromosome chr10 scaffold_76, whole genom... 102 1e-20 tr|Q0WUR3|Q0WUR3_ARATH Putative uncharacterized protein At4g1949... 94 3e-18 tr|O49467|O49467_ARATH Putative uncharacterized protein F24J7.50... 94 3e-18 tr|Q7XN31|Q7XN31_ORYSJ OSJNBa0083I11.13 protein OS=Oryza sativa ... 91 4e-17 tr|B8AVC2|B8AVC2_ORYSI Putative uncharacterized protein OS=Oryza... 91 4e-17 tr|A3AR53|A3AR53_ORYSJ Putative uncharacterized protein OS=Oryza... 91 4e-17 tr|A7YWK8|A7YWK8_BOVIN VPS54 protein OS=Bos taurus GN=VPS54 PE=2... 65 2e-09 tr|B3RZ56|B3RZ56_TRIAD Putative uncharacterized protein (Fragmen... 61 2e-08 tr|A8K9F4|A8K9F4_HUMAN cDNA FLJ77625, highly similar to Homo sap... 60 4e-08 tr|A8KA24|A8KA24_HUMAN cDNA FLJ78648, highly similar to Homo sap... 60 5e-08 tr|A4RYQ1|A4RYQ1_OSTLU Predicted protein OS=Ostreococcus lucimar... 59 9e-08 tr|Q8BRE9|Q8BRE9_MOUSE Putative uncharacterized protein OS=Mus m... 59 2e-07 tr|Q5SRW8|Q5SRW8_MOUSE Vacuolar protein sorting 54 (Yeast) (Frag... 59 2e-07 tr|Q017G1|Q017G1_OSTTA Vacuolar sorting protein VPS45 (ISS) OS=O... 58 2e-07 tr|B3DJK6|B3DJK6_DANRE LOC562169 protein OS=Danio rerio GN=LOC56... 56 1e-06 tr|Q5KJA8|Q5KJA8_CRYNE Retrograde transport, endosome to Golgi-r... 56 1e-06 tr|Q55WZ1|Q55WZ1_CRYNE Putative uncharacterized protein OS=Crypt... 56 1e-06 tr|Q4TBA8|Q4TBA8_TETNG Chromosome undetermined SCAF7170, whole g... 53 7e-06 tr|Q0JER7|Q0JER7_ORYSJ Os04g0212100 protein OS=Oryza sativa subs... 52 1e-05 tr|Q91ZJ4|Q91ZJ4_MOUSE Hcc8 OS=Mus musculus GN=Vps54 PE=2 SV=2 50 4e-05 tr|B8C131|B8C131_THAPS Predicted protein OS=Thalassiosira pseudo... 50 6e-05 tr|B8PIK1|B8PIK1_9APHY Predicted protein OS=Postia placenta Mad-... 50 7e-05 tr|Q29PH7|Q29PH7_DROPS GA17672 OS=Drosophila pseudoobscura pseud... 49 9e-05 tr|B4GKS6|B4GKS6_DROPE GL26149 OS=Drosophila persimilis GN=GL261... 49 9e-05 tr|B3N7Z8|B3N7Z8_DROER GG25349 OS=Drosophila erecta GN=GG25349 P... 48 3e-04 tr|B4NY36|B4NY36_DROYA GE18840 OS=Drosophila yakuba GN=GE18840 P... 46 8e-04 tr|B4N1D6|B4N1D6_DROWI GK24205 OS=Drosophila willistoni GN=GK242... 46 8e-04 tr|B4M9R9|B4M9R9_DROVI GJ17862 OS=Drosophila virilis GN=GJ17862 ... 46 8e-04 tr|B4HYX5|B4HYX5_DROSE GM17451 OS=Drosophila sechellia GN=GM1745... 46 8e-04
>tr|A9SVA6|A9SVA6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135792 PE=4 SV=1 Length = 1049
Score = 108 bits (270), Expect = 1e-22 Identities = 59/123 (47%), Positives = 82/123 (66%) Frame = +2
Query: 8 IHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMDA 187 I++ITQ F+ ATEK+GGR SIRGT+ SQSK+FVDNQH++++SKI A+LEQE+W ++DA Sbjct: 612 IYNITQEFISATEKVGGRLGYSIRGTLQSQSKSFVDNQHNIRVSKITAILEQENWTAVDA 671
Query: 188 PDEFQAIVDMLTHNDISKTENFSVEEIADTDGSSISNAISNENLSAVMKDEPSEAGSVIA 367 PDEFQAIVD T D S + F + + A+ N+ AV + P+ S A Sbjct: 672 PDEFQAIVDRFTEFDTS-SNGFPTAAVTVFRTDASEQAV-NQLPEAVTVEAPASDESARA 729
Query: 368 IES 376 +E+ Sbjct: 730 LEA 732
>tr|A7QC25|A7QC25_VITVI Chromosome chr10 scaffold_76, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035213001 PE=4 SV=1 Length = 985
Score = 102 bits (253), Expect = 1e-20 Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 10/142 (7%) Frame = +2
Query: 5 SIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMD 184 SI++ITQ F+ ATEKIGGR SIRGT+ SQ+KAFV+ QH +M+KI A+L+QE+WV +D Sbjct: 548 SIYNITQEFISATEKIGGRLGYSIRGTLQSQAKAFVEFQHESRMAKIKAVLDQETWVEVD 607
Query: 185 APDEFQAIV-------DMLTHNDISKTENFSV---EEIADTDGSSISNAISNENLSAVMK 334 PDEFQAIV ++T N + N + E ++ D SS+ ++ + N + + Sbjct: 608 VPDEFQAIVTSLFSLEPLITGNLVDAQGNTATNYGEVVSSNDASSMVDSGLSNNQPHIEQ 667
Query: 335 DEPSEAGSVIAIESSLTSVDSA 400 ++ E + + + +S+DSA Sbjct: 668 NDSIETSADVNAQVKSSSLDSA 689
>tr|Q0WUR3|Q0WUR3_ARATH Putative uncharacterized protein At4g19490 OS=Arabidopsis thaliana GN=At4g19490 PE=2 SV=1 Length = 564
Score = 94.4 bits (233), Expect = 3e-18 Identities = 42/72 (58%), Positives = 59/72 (81%) Frame = +2
Query: 5 SIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMD 184 SI+D+TQ F+ +TEKIGGR SSIRGT+ SQ+KAFVD+QH +M+K+ A+L+QE+W +D Sbjct: 131 SIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESRMTKLKAVLDQETWDEID 190
Query: 185 APDEFQAIVDML 220 P+EFQ+I+ L Sbjct: 191 VPEEFQSIISSL 202
>tr|O49467|O49467_ARATH Putative uncharacterized protein F24J7.50 (Putative uncharacterized protein AT4g19490) OS=Arabidopsis thaliana GN=AT4g19490 PE=2 SV=1 Length = 939
Score = 94.4 bits (233), Expect = 3e-18 Identities = 42/72 (58%), Positives = 59/72 (81%) Frame = +2
Query: 5 SIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMD 184 SI+D+TQ F+ +TEKIGGR SSIRGT+ SQ+KAFVD+QH +M+K+ A+L+QE+W +D Sbjct: 621 SIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESRMTKLKAVLDQETWDEID 680
Query: 185 APDEFQAIVDML 220 P+EFQ+I+ L Sbjct: 681 VPEEFQSIISSL 692
>tr|Q7XN31|Q7XN31_ORYSJ OSJNBa0083I11.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0083I11.13 PE=4 SV=2 Length = 952
Score = 90.5 bits (223), Expect = 4e-17 Identities = 53/140 (37%), Positives = 85/140 (60%), Gaps = 5/140 (3%) Frame = +2
Query: 8 IHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMDA 187 I+++T+ F+ ATEKIGGR +IRG + QSK FVD QH+++M+KI A+L+QE+WV++D Sbjct: 580 IYNVTEEFVAATEKIGGRLGYNIRGIVQQQSKQFVDYQHTVRMAKIKAVLDQETWVAIDV 639
Query: 188 PDEFQAIVDMLTHNDISKTENFSVE---EIADTDGSS--ISNAISNENLSAVMKDEPSEA 352 P+EFQAIV +S + +SV E+ TD SS N ++++ ++ Sbjct: 640 PEEFQAIV-------LSLSSTYSVANGMEMPSTDDSSKLHENRVTSQEPVNSAENNTDNG 692
Query: 353 GSVIAIESSLTSVDSAGTTE 412 +V S+ +V A +T+ Sbjct: 693 NAVSTSPSTENNVGHARSTQ 712
>tr|B8AVC2|B8AVC2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14898 PE=4 SV=1 Length = 1059
Score = 90.5 bits (223), Expect = 4e-17 Identities = 53/140 (37%), Positives = 85/140 (60%), Gaps = 5/140 (3%) Frame = +2
Query: 8 IHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMDA 187 I+++T+ F+ ATEKIGGR +IRG + QSK FVD QH+++M+KI A+L+QE+WV++D Sbjct: 558 IYNVTEEFVAATEKIGGRLGYNIRGIVQQQSKQFVDYQHTVRMAKIKAVLDQETWVAIDV 617
Query: 188 PDEFQAIVDMLTHNDISKTENFSVE---EIADTDGSS--ISNAISNENLSAVMKDEPSEA 352 P+EFQAIV +S + +SV E+ TD SS N ++++ ++ Sbjct: 618 PEEFQAIV-------LSLSSTYSVANGMEMPSTDDSSKLHENRVTSQEPVNSAENNTDNG 670
Query: 353 GSVIAIESSLTSVDSAGTTE 412 +V S+ +V A +T+ Sbjct: 671 NAVSTSPSTENNVGHARSTQ 690
>tr|A3AR53|A3AR53_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_013275 PE=4 SV=1 Length = 1042
Score = 90.5 bits (223), Expect = 4e-17 Identities = 53/140 (37%), Positives = 85/140 (60%), Gaps = 5/140 (3%) Frame = +2
Query: 8 IHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMDA 187 I+++T+ F+ ATEKIGGR +IRG + QSK FVD QH+++M+KI A+L+QE+WV++D Sbjct: 519 IYNVTEEFVAATEKIGGRLGYNIRGIVQQQSKQFVDYQHTVRMAKIKAVLDQETWVAIDV 578
Query: 188 PDEFQAIVDMLTHNDISKTENFSVE---EIADTDGSS--ISNAISNENLSAVMKDEPSEA 352 P+EFQAIV +S + +SV E+ TD SS N ++++ ++ Sbjct: 579 PEEFQAIV-------LSLSSTYSVANGMEMPSTDDSSKLHENRVTSQEPVNSAENNTDNG 631
Query: 353 GSVIAIESSLTSVDSAGTTE 412 +V S+ +V A +T+ Sbjct: 632 NAVSTSPSTENNVGHARSTQ 651
>tr|A7YWK8|A7YWK8_BOVIN VPS54 protein OS=Bos taurus GN=VPS54 PE=2 SV=1 Length = 977
Score = 64.7 bits (156), Expect = 2e-09 Identities = 31/84 (36%), Positives = 50/84 (59%) Frame = +2
Query: 5 SIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMD 184 S+ + + F+L TE+I GR + S+ G + SQ+ FV+ H + +K++ LL+ E W D Sbjct: 637 SLSRLMETFILETEQICGRKSMSLLGALQSQANKFVNRFHEERKTKLSLLLDNERWKQAD 696
Query: 185 APDEFQAIVDMLTHNDISKTENFS 256 P EFQ +VD ++H I+ E S Sbjct: 697 VPAEFQDLVDSISHGKIALPEKKS 720
>tr|B3RZ56|B3RZ56_TRIAD Putative uncharacterized protein (Fragment) OS=Trichoplax adhaerens GN=TRIADDRAFT_27025 PE=4 SV=1 Length = 861
Score = 61.2 bits (147), Expect = 2e-08 Identities = 32/79 (40%), Positives = 47/79 (59%) Frame = +2
Query: 2 RSIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSM 181 RSIH F+ TE I GR S+ GT+ +Q++ FV+ H + +KI+ +L+ E W Sbjct: 517 RSIHQ----FIAETEGICGRQMHSLSGTLMAQARKFVEKFHDERRTKISLILDNEQWKQA 572
Query: 182 DAPDEFQAIVDMLTHNDIS 238 D P EFQA+VD L + I+ Sbjct: 573 DVPPEFQALVDELDKDGIA 591
>tr|A8K9F4|A8K9F4_HUMAN cDNA FLJ77625, highly similar to Homo sapiens vacuolar protein sorting 54 (VPS54), transcript variant 1, mRNA OS=Homo sapiens PE=2 SV=1 Length = 977
Score = 60.5 bits (145), Expect = 4e-08 Identities = 30/84 (35%), Positives = 50/84 (59%) Frame = +2
Query: 5 SIHDITQVFMLATEKIGGRYASSIRGTMHSQSKAFVDNQHSLKMSKINALLEQESWVSMD 184 ++ + + F+L TE+I GR ++S+ G + SQ+ FV+ H + +K++ LL+ E W D Sbjct: 637 TLSKLMETFILDTEQICGRKSTSLLGALQSQAIKFVNRFHEERKTKLSLLLDNERWKQAD 696
Query: 185 APDEFQAIVDMLTHNDISKTENFS 256 P EFQ +VD L+ I+ E S Sbjct: 697 VPAEFQDLVDSLSDGKIALPEKKS 720
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