BP915234
Clone id YMU001_000069_B03
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGATCTGCAAAGGTGGTTGTGGCGGTTTCTTTGGTGAACGTACCTGCCGTTTTCCTGTCC
CTTGCCCTCATTGTCATTCCTTCTGTGGGTAGTTATTTCCTTGGTTATTACTACTTCGAC
TTTATTTCCCTACAGGTCAAAAATCTGCACAGTTCCATCTTCTTTAATCATGGATAAAAG
CTCGTGAGTTTTTTGAAAATACACACCACACGGCTCCTGTTCATAAAAGTCTCTAAGTCC
TAGCCTATGATTGGCTTCTTTGGTCTCAGGCTTCGCGGCGACATCGTACACTTCTTTCAG
TAGGTGTTGCAACTCTACTTGATGTCCCTCCTCACTCTTGAATCTGCTGGTGAACATTGT
AGTGTGATGCTCTTCTAACTATTCTTTTGAAAGATATTTTTCCTTGGTAGCTTTGACTGA
ATCTGGATCCAGTCAGTTCCTGCGGCCGCGAATTCTTCCAGTTGAGTACC
■■Homology search results ■■ -
sp_hit_id A4QJV2
Definition sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS=Olimarabidopsis pumila
Align length 38
Score (bit) 32.3
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915234|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_B03.
(436 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS... 32 0.89
sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic OS... 32 0.89
sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS... 32 1.2
sp|A4QJM0|RK33_AETGR 50S ribosomal protein L33, chloroplastic OS... 32 1.5
sp|P34203|TOP2_ASFM2 DNA topoisomerase 2 OS=African swine fever ... 31 2.6
sp|B1NWH1|RK33_MANES 50S ribosomal protein L33, chloroplastic OS... 31 2.6
sp|Q0G9J8|RK33_LIRTU 50S ribosomal protein L33, chloroplastic OS... 30 3.4
sp|Q06GX6|RK33_DRIGR 50S ribosomal protein L33, chloroplastic OS... 30 3.4
sp|Q7YJV5|RK33_CALFG 50S ribosomal protein L33, chloroplastic OS... 30 3.4
sp|A4QJD6|RK33_AETCO 50S ribosomal protein L33, chloroplastic OS... 30 3.4
sp|A8SEC4|RK33_CERDE 50S ribosomal protein L33, chloroplastic OS... 30 4.4
sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 O... 30 5.7
sp|P06393|RK33_TOBAC 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q2VEF7|RK33_SOLTU 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q2MI79|RK33_SOLLC 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q2MIG6|RK33_SOLBU 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q33C11|RK33_NICTO 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q3C1K8|RK33_NICSY 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|A6MME3|RK33_CHLSC 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q7FNS6|RK33_ATRBE 50S ribosomal protein L33, chloroplastic OS... 29 7.5
sp|Q8BX94|OSBL2_MOUSE Oxysterol-binding protein-related protein ... 29 7.5
sp|A6MMW5|RK33_ILLOL 50S ribosomal protein L33, chloroplastic OS... 29 9.8
sp|A6H5K3|RK33_CYCTA 50S ribosomal protein L33, chloroplastic OS... 29 9.8

>sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic
OS=Olimarabidopsis pumila GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.3 bits (72), Expect = 0.89
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHN 41


>sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic
OS=Nasturtium officinale GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.3 bits (72), Expect = 0.89
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHN 41


>sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic
OS=Lobularia maritima GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND++ + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDSKKELAGISRYITQKNRHN 41


>sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic
OS=Lepidium virginicum GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


>sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic
OS=Draba nemorosa GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


>sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic
OS=Crucihimalaya wallichii GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


>sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic
OS=Capsella bursa-pastoris GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


>sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic
OS=Barbarea verna GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


>sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic
OS=Arabidopsis thaliana GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKEAAGISRYITQKNRHN 41


>sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic
OS=Arabis hirsuta GN=rpl33 PE=3 SV=1
Length = 66

Score = 32.0 bits (71), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V I E T+ RND + + RY+ Q+NRHN
Sbjct: 4 GKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHN 41


tr_hit_id Q15WW6
Definition tr|Q15WW6|Q15WW6_PSEA6 Acyltransferase 3 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length 74
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915234|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_B03.
(436 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q15WW6|Q15WW6_PSEA6 Acyltransferase 3 OS=Pseudoalteromonas at... 34 4.1
tr|Q7WYM3|Q7WYM3_BACSH LP1G.08 OS=Bacillus sphaericus PE=4 SV=1 34 4.1
tr|A8NHK9|A8NHK9_BRUMA Erythroblast macrophage protein EMP, puta... 34 4.1
tr|A7BAI3|A7BAI3_9ACTO Putative uncharacterized protein OS=Actin... 33 7.1
tr|A9QBK7|A9QBK7_MUSAC 50S ribosomal protein L33 (Fragment) OS=M... 33 7.1
tr|O50338|O50338_ECOLX TrwdD protein OS=Escherichia coli GN=trwD... 33 9.2
tr|B2G2P1|B2G2P1_PRORE Conjugal transfer protein OS=Providencia ... 33 9.2
tr|A8R759|A8R759_SALDU TrwD protein OS=Salmonella dublin GN=trwD... 33 9.2
tr|A7KZU6|A7KZU6_SALDU TrwD OS=Salmonella dublin GN=trwD PE=4 SV=1 33 9.2
tr|B0ZB58|B0ZB58_HUMLU Carboxyl methyltransferase 4 OS=Humulus l... 33 9.2
tr|A7TRD7|A7TRD7_VANPO Putative uncharacterized protein OS=Vande... 33 9.2

>tr|Q15WW6|Q15WW6_PSEA6 Acyltransferase 3 OS=Pseudoalteromonas
atlantica (strain T6c / BAA-1087) GN=Patl_1096 PE=4 SV=1
Length = 614

Score = 33.9 bits (76), Expect = 4.1
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -2

Query: 345 RFKSEEGHQVELQHLLKEVYDVAAKPETKEANH----RLGLRDFYEQEPCGVYFQKTHEL 178
R K + +L+ KEVY + +P +E N R GL+ F +E + HE
Sbjct: 496 RTKEYDVFLAQLKAAAKEVYLILGEPRGEEFNPQAVIRHGLKAFMTEEETRNTYAIHHEA 555

Query: 177 LSMIKEDGTVQIFD 136
LS+ E G ++I D
Sbjct: 556 LSLFTELGDIEIID 569


>tr|Q7WYM3|Q7WYM3_BACSH LP1G.08 OS=Bacillus sphaericus PE=4 SV=1
Length = 349

Score = 33.9 bits (76), Expect = 4.1
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Frame = -2

Query: 300 LKEVYDVAAKPETKEANHRLGLRDFYEQEPCGVYFQKTHE--LLSMIKEDGTVQ-IFDL* 130
LKEV ++ A P ++ + + + ++ E E +Y QKT + M + T + +F+
Sbjct: 88 LKEVTNLTAIPTAQDVSLKWKMPEYKELEKARIYRQKTDVGLFVRMFRSASTYEPLFETN 147

Query: 129 GN-------KVEVVITKEITTHRRNDNEGKGQ 55
G K + T ++TT NDNE +G+
Sbjct: 148 GTTFKDLTVKADTEYTYKVTTVDTNDNESEGK 179


>tr|A8NHK9|A8NHK9_BRUMA Erythroblast macrophage protein EMP,
putative OS=Brugia malayi GN=Bm1_02660 PE=4 SV=1
Length = 440

Score = 33.9 bits (76), Expect = 4.1
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -2

Query: 357 MFTSRFKSEEGHQVELQHLLKEVYDVAAKPETKEANHRLGLRDFYEQEPCGVYFQKTHEL 178
MF RF+S + + + LKE D+ AK + + RD +E +YF + EL
Sbjct: 70 MFNKRFRSSQKTMEKNNYFLKETADLVAKAMKGDGTKPIYKRDI--KEKMDLYFGRFDEL 127

Query: 177 LSMIKE--DGTVQIFDL*GNKVE 115
K+ D +++ DL +V+
Sbjct: 128 FGTFKQITDEEMELIDLLDTRVK 150


>tr|A7BAI3|A7BAI3_9ACTO Putative uncharacterized protein
OS=Actinomyces odontolyticus ATCC 17982 GN=ACTODO_00647
PE=4 SV=1
Length = 758

Score = 33.1 bits (74), Expect = 7.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2

Query: 303 LLKEVYDVAAKPETKEANHRLGLRDFYEQEPCGVYF 196
L++ +D+A PE E RLG+ FYE+E G Y+
Sbjct: 666 LIQRFHDIATDPEVCEVVRRLGITHFYEEED-GAYY 700


>tr|A9QBK7|A9QBK7_MUSAC 50S ribosomal protein L33 (Fragment) OS=Musa
acuminata GN=rpl33 PE=3 SV=1
Length = 66

Score = 33.1 bits (74), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2

Query: 129 GNKVEVVITKEITTHRRNDNEGKGQENGRYVHQRNRHN 16
G V V++ E T+ RND + RY+ Q+NRHN
Sbjct: 4 GKDVRVIVILECTSCARNDVNKESPGISRYITQKNRHN 41


>tr|O50338|O50338_ECOLX TrwdD protein OS=Escherichia coli GN=trwD
PE=4 SV=1
Length = 358

Score = 32.7 bits (73), Expect = 9.2
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -2

Query: 273 KPETKEANHRLGLRDFYEQEPCGVYFQKTHELLSMIKEDGTVQIF 139
KP +EANH L ++DF EP V ELL +K DGT++ F
Sbjct: 145 KPSAEEANHYLTVQDFTRLEPFEV------ELLK-LKRDGTIREF 182


>tr|B2G2P1|B2G2P1_PRORE Conjugal transfer protein OS=Providencia
rettgeri GN=trwD PE=4 SV=1
Length = 364

Score = 32.7 bits (73), Expect = 9.2
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -2

Query: 273 KPETKEANHRLGLRDFYEQEPCGVYFQKTHELLSMIKEDGTVQIF 139
KP +EANH L ++DF EP V ELL +K DGT++ F
Sbjct: 151 KPSAEEANHYLTVQDFTRLEPFEV------ELLK-LKRDGTIREF 188


>tr|A8R759|A8R759_SALDU TrwD protein OS=Salmonella dublin GN=trwD
PE=4 SV=1
Length = 358

Score = 32.7 bits (73), Expect = 9.2
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -2

Query: 273 KPETKEANHRLGLRDFYEQEPCGVYFQKTHELLSMIKEDGTVQIF 139
KP +EANH L ++DF EP V ELL +K DGT++ F
Sbjct: 145 KPSAEEANHYLTVQDFTRLEPFEV------ELLK-LKRDGTIREF 182


>tr|A7KZU6|A7KZU6_SALDU TrwD OS=Salmonella dublin GN=trwD PE=4 SV=1
Length = 325

Score = 32.7 bits (73), Expect = 9.2
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -2

Query: 273 KPETKEANHRLGLRDFYEQEPCGVYFQKTHELLSMIKEDGTVQIF 139
KP +EANH L ++DF EP V ELL +K DGT++ F
Sbjct: 112 KPSAEEANHYLTVQDFTRLEPFEV------ELLK-LKRDGTIREF 149


>tr|B0ZB58|B0ZB58_HUMLU Carboxyl methyltransferase 4 OS=Humulus
lupulus GN=CMT4 PE=2 SV=1
Length = 366

Score = 32.7 bits (73), Expect = 9.2
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -2

Query: 204 VYFQKTHELLSMIKEDGTVQIFDL*GNKVEVVITKEITTHRRNDNEGKGQENGRYV 37
VYF + E+ S+++E+G+ + L N E+ T+H N N K E G+YV
Sbjct: 261 VYFANSTEVESVVQEEGSFSVQKL--NSFEMAWDSGFTSHEHNSNNEK-CERGKYV 313