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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915244
Clone id YMU001_000069_C02
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAAGATGGAGGTGATGTTAATGTCCAAGCAGGCCAAGTTGGTGCTCCAGGAGCACAGTTG
CGCTCTTACTCTACTGTCTATTCTACCAGTAAGGCGCCGAATGGTATGGCTGTTGCTGTT
GGTCCTGCAGCTTCTGCAACCTTCAGTAAATGCGACTTCTCCTCTTATATGATGGCAAAC
TCCACCGCATGTGAAGGCACGTGCAATGTCACTTGTCCAGTAAGCTTCTTGGGGTTCTGC
TTGCAAGGAT
■■Homology search results ■■ -
sp_hit_id Q3J7S3
Definition sp|Q3J7S3|LOLD_NITOC Lipoprotein-releasing system ATP-binding protein lolD OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 77
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915244|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C02.
         (250 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3J7S3|LOLD_NITOC Lipoprotein-releasing system ATP-binding pr...    32   1.3  
sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurb...    32   1.3  
sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurb...    31   2.2  
sp|Q54P69|PSIM_DICDI Protein psiM OS=Dictyostelium discoideum GN...    30   3.7  
sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine ...    29   6.3  
sp|Q68DE3|K2018_HUMAN Basic helix-loop-helix domain-containing p...    29   8.3  

>sp|Q3J7S3|LOLD_NITOC Lipoprotein-releasing system ATP-binding
           protein lolD OS=Nitrosococcus oceani (strain ATCC 19707
           / NCIMB 11848) GN=lolD PE=3 SV=1
          Length = 233

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -2

Query: 237 EPQEAYWTSDIARAFTCGGVCHHIRGEVAFTEGCRSC-----RTNSNSHTIRRLTGRIDS 73
           E +   W  D+AR FT G +   +  EV  +   R C      + S   T+  L G +D 
Sbjct: 5   EQEMVLWCRDLARKFTDGYLSVEVLREVNLSIAPRECVAIIGASGSGKSTLLHLLGGLDR 64

Query: 72  RVRAQLCSWSTNLACLD 22
             + Q+     NLA L+
Sbjct: 65  PTQGQVWIAGQNLARLN 81


>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita
           maxima GN=CPN60-1 PE=1 SV=1
          Length = 575

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = -2

Query: 231 QEAYWTSDIARAFTCGGVCHHIRGEVAFTEGCRSCRTNSNSHTIRR-LTGRIDSRV---- 67
           Q A  T+D+A     G  C  I  +  FTEGC+S  +  N+  +RR ++  +DS V    
Sbjct: 107 QVANATNDVAGD---GTTCATILTKAIFTEGCKSVASGMNAMDLRRGISMAVDSVVTNLK 163

Query: 66  -RAQLCSWSTNLA 31
            RA++ S S  +A
Sbjct: 164 SRARMISTSEEIA 176


>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita
           maxima GN=CPN60-2 PE=1 SV=1
          Length = 575

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -2

Query: 231 QEAYWTSDIARAFTCGGVCHHIRGEVAFTEGCRSCRTNSNSHTIRR-LTGRIDSRV---- 67
           Q A  T+D+A     G  C  I     FTEGC+S     N+  +RR ++  +DS V    
Sbjct: 107 QVANATNDVAGD---GTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLK 163

Query: 66  -RAQLCSWSTNLA 31
            RA++ S S  +A
Sbjct: 164 SRARMISTSEEIA 176


>sp|Q54P69|PSIM_DICDI Protein psiM OS=Dictyostelium discoideum
           GN=psiM PE=3 SV=1
          Length = 733

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
 Frame = +1

Query: 118 VGPAASATFSKCDFSSYMMANSTACEGTCNVT---CPVS---FLGFCLQG 249
           VG       +KCD     M  S   EG CN T   CP S    +G+C  G
Sbjct: 544 VGQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPG 593


>sp|Q960X8|HRS_DROME Hepatocyte growth factor-regulated tyrosine
           kinase substrate OS=Drosophila melanogaster GN=Hrs PE=1
           SV=1
          Length = 760

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 228 EAYWTSDIARAFTCGGVCHHIRGEVAFT---EGCRSC 127
           +A +T+D A  +  G VCH  R E  FT     CR+C
Sbjct: 147 DAMFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNC 183


>sp|Q68DE3|K2018_HUMAN Basic helix-loop-helix domain-containing
           protein KIAA2018 OS=Homo sapiens GN=KIAA2018 PE=1 SV=2
          Length = 2242

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = +1

Query: 10  GDVNVQAGQVGAPGAQLRSYSTVYSTSKAPNGMAVAVGPAASATFSKCDFSSYMMANSTA 189
           G++      V  P  Q++    VYS    P G +         TF+         AN   
Sbjct: 127 GNLKNSKVSVVIPSDQVQKKIIVYSNGNQPGGNSQGTA-VQGITFNVSHNLQKQTANVVP 185

Query: 190 CEGTCNVTCPVSFLG 234
            + TCN+  PVS  G
Sbjct: 186 VQRTCNLVTPVSISG 200
tr_hit_id A9TWI4
Definition tr|A9TWI4|A9TWI4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 76
Score (bit) 41.2
E-value 0.026
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915244|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_C02.
         (250 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TWI4|A9TWI4_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A7Z4X7|A7Z4X7_BACA2 BaeB OS=Bacillus amyloliquefaciens (strai...    33   5.5  
tr|Q1RS81|Q1RS81_BACAM Hydroxyacylglutathione hydrolase OS=Bacil...    33   5.5  
tr|B4NWN4|B4NWN4_DROYA GE18137 OS=Drosophila yakuba GN=GE18137 P...    33   5.5  
tr|Q5AIB2|Q5AIB2_CANAL Potential glycosyl hydrolase OS=Candida a...    33   7.2  
tr|A2F0R0|A2F0R0_TRIVA Putative uncharacterized protein OS=Trich...    33   9.4  

>tr|A9TWI4|A9TWI4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98219 PE=4 SV=1
          Length = 818

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
 Frame = +1

Query: 7   GGDVNVQAGQVGAPGAQLRSYSTVYSTSKAPNGM----AVAVGPAASATFSKCDFSSYMM 174
           GGDV +QAGQ    G +L +Y TV+S ++    +    AVAV   A+A F +C  ++   
Sbjct: 365 GGDVELQAGQNNTHGVELDAYKTVFSGTEGMGILQGVHAVAVKSFATANFVRCQTTN--- 421

Query: 175 ANSTAC-EGTCNVTCP 219
            N+  C  GTC+  CP
Sbjct: 422 DNAIDCGGGTCDF-CP 436


>tr|A7Z4X7|A7Z4X7_BACA2 BaeB OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=baeB PE=4 SV=1
          Length = 225

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
 Frame = -2

Query: 192 TCGGVC-----HHIRGEVAFTEGCRSCRTNSNS-----HTIRRLTGRIDSRVR 64
           T GG+C     H   G+  FTEGC  C    +S     H+I+R+   I   VR
Sbjct: 124 TAGGMCYLLSDHLFTGDTVFTEGCGICGDRGSSAEDMFHSIQRIKASIPPHVR 176


>tr|Q1RS81|Q1RS81_BACAM Hydroxyacylglutathione hydrolase OS=Bacillus
           amyloliquefaciens GN=baeB PE=4 SV=1
          Length = 230

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
 Frame = -2

Query: 192 TCGGVC-----HHIRGEVAFTEGCRSCRTNSNS-----HTIRRLTGRIDSRVR 64
           T GG+C     H   G+  FTEGC  C    +S     H+I+R+   I   VR
Sbjct: 129 TAGGMCYLLSDHLFTGDTVFTEGCGICGDRGSSAEDMFHSIQRIKASIPPHVR 181


>tr|B4NWN4|B4NWN4_DROYA GE18137 OS=Drosophila yakuba GN=GE18137 PE=4
           SV=1
          Length = 853

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 55  QLRSYSTVYSTSKAPNGMAVAVGPAASATFSKCDFSS---YMMANSTACEGTCNVTCPVS 225
           Q+ SY+T Y    +   +AVA G A+S  +S C   S   Y +A +TA       T  VS
Sbjct: 632 QISSYTTAYQQHSSSPAVAVAPGAASSCAYSSCAVPSVPPYGIATTTASSNAPYQTTAVS 691


>tr|Q5AIB2|Q5AIB2_CANAL Potential glycosyl hydrolase OS=Candida
           albicans GN=SCW4 PE=4 SV=1
          Length = 578

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/55 (41%), Positives = 29/55 (52%)
 Frame = +1

Query: 4   DGGDVNVQAGQVGAPGAQLRSYSTVYSTSKAPNGMAVAVGPAASATFSKCDFSSY 168
           DGG  N  A    AP A  ++  +V S + AP  +AVAV PAAS   S    SS+
Sbjct: 92  DGGSTNT-ASTAAAPAAPAQAPVSVASAAAAP-AVAVAVAPAASTPKSTSSSSSF 144


>tr|A2F0R0|A2F0R0_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_107640 PE=4 SV=1
          Length = 501

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 13  DVNVQAGQVGAPGAQLRSYSTVYSTSKAPNGMAVAVGPAASATFSKCDFSSYMMANSTA 189
           DVN     V +PG++ ++ + +++ S+      + + P  +  F+ C FS    A+ T+
Sbjct: 77  DVNFSGHIVISPGSRFKATNCIFNCSQDNQDSIIEISPQTTCEFTNCQFSGGKQASITS 135