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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915276
Clone id YMU001_000069_F03
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTATTTTTTTGACAAGCAAACCATGAAGCACTCAATTCTCAAAGTATAACTTTG
ACAAACAGGTAACTAGTTTCCCAAACCTGAACACCCTAGGCATGTCCTCTGTACATCCCA
AAACACAAGTCAAGAGTTCCATCACACAATGTATCTCACCCACCAGCTTCAACACTGCCA
ATGAAGTTTCTTTAAGGAAGGACCACGGCACCACACGCTGTTTGACATTTCTGGGAACAG
ATAGACAGCGACCTTGTGGAAACTGGGCAAACACCGCTGCAACAGCTCCTCTCACCATGT
CGATGGGTTGGTCTTGTTGCCTTTTCCAACCCCTAAAGCTTCCCATTGCATGTCAACAGC
ACGTATACCATCTAGCTCATTGTGCCTGGAATACTGGCACCTATCATATGGAGGCCTTGC
CATAGACGTATTTAAGTCAGAGCCCATGGACGCATACTGTAAATTACCAGCCTGATATCC
TAGCACCTCAAGATCCTTTCTGCTGGAACGCACCTCATTACCATACCTTTGCGG
■■Homology search results ■■ -
sp_hit_id Q5FND4
Definition sp|Q5FND4|GATB_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Gluconobacter oxydans
Align length 81
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915276|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_F03.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FND4|GATB_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    32   1.8  
sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus...    32   2.3  
sp|Q0BTK1|GATB_GRABC Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    32   2.3  
sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng2 OS=...    31   3.0  
sp|Q1GE00|TRUA_SILST tRNA pseudouridine synthase A OS=Silicibact...    31   4.0  
sp|Q2ND71|GATB_ERYLH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   4.0  
sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog OS=Hae...    30   5.2  
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arterit...    30   6.8  
sp|Q5NPF4|GATB_ZYMMO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.8  
sp|A4WX55|GATB_RHOS5 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.8  
sp|Q3J4Z8|GATB_RHOS4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.8  
sp|A3PHJ3|GATB_RHOS1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.8  
sp|A5FWV7|GATB_ACICJ Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   6.8  
sp|Q86I06|NEK3_DICDI Probable serine/threonine-protein kinase ne...    30   8.8  

>sp|Q5FND4|GATB_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Gluconobacter oxydans
           GN=gatB PE=3 SV=1
          Length = 485

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMARPP----YDRCQYSRHN---- 363
           P+  G  +R  R+ L  +G   GN++  SM +D+N S+ +P       RC+    N    
Sbjct: 172 PEEAGAYLRKLRQILRYIGTCDGNMEEGSMRADVNVSVRKPGETEYRTRCEIKNVNSIRF 231

Query: 362 -----ELDGIRAVDMQWEALG 315
                E++  R +++ WEA G
Sbjct: 232 VMMAIEVEAQRQIEV-WEAGG 251


>sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus
           (strain BR6) GN=pol PE=3 SV=2
          Length = 899

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/78 (24%), Positives = 26/78 (33%)
 Frame = +2

Query: 254 NTAATAPLTMSMGWSCCLFQPLKLPIACQQHVYHLAHCAWNTGTYHMEALP*TYLSQSPW 433
           +TA    L +S  WS C+ +    P A          C W  G                W
Sbjct: 316 STARVKRLDLSQPWSLCILKTEYTPTA----------CLWQDGVVE-------------W 352

Query: 434 THTVNYQPDILAPQDPFC 487
            H  +  P ++ P D FC
Sbjct: 353 IHLPHISPKVITPYDIFC 370


>sp|Q0BTK1|GATB_GRABC Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Granulibacter bethesdensis
           (strain ATCC BAA-1260 / CGDNIH1) GN=gatB PE=3 SV=1
          Length = 483

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMAR---PPYDRCQYSRHNEL 357
           P+  G  +R  R  L  LG   GN++  SM +D+N S+ R   P   RC+    N +
Sbjct: 172 PEEAGAYLRKLRTILRYLGTCDGNMEEGSMRADVNVSVRRAGEPFRTRCEIKNVNSI 228


>sp|O14188|RNG2_SCHPO Ras GTPase-activating-like protein rng2
           OS=Schizosaccharomyces pombe GN=rng2 PE=1 SV=1
          Length = 1489

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 29  SKYNFDKQVTSFPNLNTLGMSSVHPKTQVKSSITQC----ISPTSFNTANEVSLRKDHGT 196
           +KY F KQ T +  +NTL M S++  ++    + QC    +       AN     K  GT
Sbjct: 785 NKYKFGKQSTEYLKINTLSMKSLNNSSRKFLELYQCFFYVLQTNEMYLANYFQALKTEGT 844

Query: 197 T 199
           +
Sbjct: 845 S 845


>sp|Q1GE00|TRUA_SILST tRNA pseudouridine synthase A OS=Silicibacter
           sp. (strain TM1040) GN=truA PE=3 SV=1
          Length = 259

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 321 FRGWKRQQDQPIDMVRGAVAAVFAQFPQG 235
           F GW+RQ+DQP   V+GA+ A  A+   G
Sbjct: 15  FAGWQRQKDQP--SVQGAIEAALARIEPG 41


>sp|Q2ND71|GATB_ERYLH Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Erythrobacter litoralis
           (strain HTCC2594) GN=gatB PE=3 SV=1
          Length = 498

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMARP 396
           P   G  VR  R  L  +G   GN++  SM +D+N S+ RP
Sbjct: 177 PAEAGAYVRKLRAILRYVGSCDGNMEEGSMRADVNVSVRRP 217


>sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog
           OS=Haemophilus influenzae GN=glgX PE=3 SV=1
          Length = 659

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +2

Query: 284 SMGWSCCLF----QPLKLPIACQQHVYHLAHCAWNTGT-----YHMEALP*TYLSQSPWT 436
           ++G   CLF    Q  +LP+   ++V+HLA     TGT      H E      L   P+ 
Sbjct: 35  AIGVELCLFDEQNQETRLPMVRTENVWHLAVTGVKTGTEYAFRIHGEFANPQKLILDPYA 94

Query: 437 HTVNYQPDI 463
             VN +PD+
Sbjct: 95  KAVNGKPDL 103


>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis
            virus (strain Bucyrus) GN=rep PE=1 SV=3
          Length = 3175

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +2

Query: 272  PLTMSMGWSCCLFQPLKLPIACQQHVYHLAHCAWNTGT-----YHMEALP*TYLSQ 424
            P+   + W CCLF PL + +     ++HL  CA  TG      +++ A   +YLS+
Sbjct: 1313 PVVTGLLWLCCLFTPLSMRLC----LFHLV-CATVTGNVISLWFYITAAGTSYLSE 1363


>sp|Q5NPF4|GATB_ZYMMO Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Zymomonas mobilis GN=gatB
           PE=3 SV=2
          Length = 490

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMAR---PPYDRCQYSRHNELDGI 348
           P   G  +R  R  L  +G   GN++  SM +D+N S+ +   P   RC+    N +  +
Sbjct: 172 PAEAGAYIRKLRAILRYVGSCDGNMEEGSMRADVNVSVRKAGEPFGTRCEIKNVNSVRFV 231

Query: 347 RAVDMQWEA 321
           +A  +++EA
Sbjct: 232 QAA-IEYEA 239


>sp|A4WX55|GATB_RHOS5 Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Rhodobacter sphaeroides
           (strain ATCC 17025 / ATH 2.4.3) GN=gatB PE=3 SV=1
          Length = 503

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMARP-PYDRCQ 378
           P+     V   R+ L  LG   GN+Q  ++ +D+N S+ RP  Y+R Q
Sbjct: 181 PEEAAAYVAKLRQILRYLGTCDGNMQNGNLRADVNVSVCRPGDYERYQ 228
tr_hit_id A1CFN1
Definition tr|A1CFN1|A1CFN1_ASPCL Putative uncharacterized protein OS=Aspergillus clavatus
Align length 116
Score (bit) 36.6
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915276|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_F03.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CFN1|A1CFN1_ASPCL Putative uncharacterized protein OS=Asper...    37   0.77 
tr|A6GB09|A6GB09_9DELT Serine/threonine kinase family protein OS...    35   1.7  
tr|B0CXE1|B0CXE1_LACBS Predicted protein OS=Laccaria bicolor (st...    34   3.8  
tr|Q18HX5|Q18HX5_HALWD Putative uncharacterized protein OS=Haloq...    34   5.0  
tr|Q2PYW4|Q2PYW4_SOLTU Putative uncharacterized protein OS=Solan...    33   6.5  
tr|Q4MZ24|Q4MZ24_THEPA DEAD box RNA helicase, putative OS=Theile...    33   6.5  
tr|Q23DD9|Q23DD9_TETTH Putative uncharacterized protein OS=Tetra...    33   6.5  
tr|B0JNV0|B0JNV0_MICAN Ferric uptake regulation protein OS=Micro...    33   8.5  
tr|A9HRI7|A9HRI7_GLUDA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran...    33   8.5  
tr|Q6ISY1|Q6ISY1_MICAE Ferric uptake regulator (Fur protein) OS=...    33   8.5  
tr|B7JZK5|B7JZK5_SYNP8 Ferric uptake regulator, Fur family OS=Sy...    33   8.5  
tr|B5ZLF7|B5ZLF7_GLUDA Glutamyl-tRNA(Gln) amidotransferase, B su...    33   8.5  
tr|B4BUX8|B4BUX8_9CHRO Ferric uptake regulator, Fur family OS=Cy...    33   8.5  
tr|A8WEV7|A8WEV7_MICAE Fur OS=Microcystis aeruginosa XW01 PE=4 SV=1    33   8.5  

>tr|A1CFN1|A1CFN1_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_093790 PE=4 SV=1
          Length = 434

 Score = 36.6 bits (83), Expect = 0.77
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
 Frame = +2

Query: 197 TRCLTFLGTDRQRPCGNWANTAATAPLTMSMGWSCCLFQPLKLPIACQQHVYH------L 358
           TR  +F+  D   P  NWA   A  P  + M     ++  + +P A   H YH      L
Sbjct: 85  TRLPSFIQNDILNPYINWAKRVARFPTDVVMVTHLLIYMTISVPSAIWLHYYHFTWGHGL 144

Query: 359 AHC---AWNTGTYHMEALP*TYLS--QSPWTHTVN-YQPDILAPQDPFCWNAPHYH 508
            H     W  GTY +      +++   +P    V+   P I+ P     WN+ +YH
Sbjct: 145 LHWILHVWYAGTYTLMKHQYVHMNGVLAPQYRLVDRLFPYIVDPLVGHTWNSYYYH 200


>tr|A6GB09|A6GB09_9DELT Serine/threonine kinase family protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_13310 PE=4 SV=1
          Length = 499

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -2

Query: 337 TCNGKL*GLEKATRPTHRHGERSCCSGVCPVSTRSLSICSQKCQT------ACGA 191
           TC G+  G  + TRP+     R CC+G+   S R  S   + C T       CGA
Sbjct: 443 TCGGRTSGSRRRTRPSRSRSARRCCAGIERWSRRWSSTSRRACSTRRTGPGRCGA 497


>tr|B0CXE1|B0CXE1_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_231681 PE=4 SV=1
          Length = 534

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTS---MARPPYDRCQYSRHNEL 357
           P+  G  VR+ +  L  +G   GN++  S+  D+N S   + RPP  RC+    N +
Sbjct: 198 PEEAGMFVRTLQAVLRAIGASDGNMEQGSLRCDVNVSVNRVGRPPGTRCEIKNLNSV 254


>tr|Q18HX5|Q18HX5_HALWD Putative uncharacterized protein
           OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ2282A
           PE=4 SV=1
          Length = 390

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 341 VDMQWEALGVGKGNKTNPSTW*EELLQRCLPSFHKVAVYLFPEMSNSVWCRGPSLKKL 168
           VD+   ALG G G+  +P+ W +E ++R +P    +AV  F     S+  R P L  L
Sbjct: 206 VDLSRGALGFGLGSSLSPADWADESVERQVPDGDPIAV--FETDRRSLLIRAPGLTPL 261


>tr|Q2PYW4|Q2PYW4_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 319

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = -1

Query: 308 KGNKTNPSTW*EELLQRCLPSFHKV-------AVYLFPEMSNSVW 195
           K N+++P  W EE  +R    FHK        +V L PE+S  +W
Sbjct: 161 KENESDPDVWVEERAERTFNDFHKYVAENLDSSVQLTPELSTQIW 205


>tr|Q4MZ24|Q4MZ24_THEPA DEAD box RNA helicase, putative OS=Theileria
           parva GN=TP03_0667 PE=4 SV=1
          Length = 2359

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +2

Query: 26  FSKYNFDKQVTSFP-NLNTLGMSSVHPKTQVKSSITQCISPTSFNTANEVSLRKDHGTTR 202
           F  +  DK V  FP  LN L     +P T VKS ITQ     +   AN ++  ++  TT 
Sbjct: 566 FQHFTGDKAVKFFPIKLNYLTYQLTNPVTTVKSEITQ----LNHTNANSINGSREDVTTD 621

Query: 203 CLTFLGTDRQRPCGNWANT-AATAPLT 280
             T+  TD +     +  T + T P T
Sbjct: 622 TTTYGTTDAKTDPTTYGTTDSITDPTT 648


>tr|Q23DD9|Q23DD9_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00047520 PE=4
           SV=1
          Length = 369

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 20  TQFSKYNFDKQVTSFPNLNTLGMSSVHPKTQVKSSITQCISPTSFNTANEVSLRKDHGTT 199
           TQ   +   + + SFP L +L +   +PK Q+  ++ + I PT+  T             
Sbjct: 255 TQNLFFQLQESILSFPLLESLDIEITYPKNQIDENMNEYILPTTLKTL------------ 302

Query: 200 RCLTFLGTD 226
            CLT   TD
Sbjct: 303 -CLTITSTD 310


>tr|B0JNV0|B0JNV0_MICAN Ferric uptake regulation protein
           OS=Microcystis aeruginosa (strain NIES-843) GN=fur PE=4
           SV=1
          Length = 183

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 64  PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 186
           P P H  H++C   N + EF++   L H L+ C+    KEG
Sbjct: 91  PYPHHHHHLVCIQCNKTIEFNNDSILKHSLKQCE----KEG 127


>tr|A9HRI7|A9HRI7_GLUDA Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit OS=Gluconacetobacter
           diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
           GN=gatB PE=4 SV=1
          Length = 483

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
 Frame = -1

Query: 518 PQRYGNEVRSSRKDLEVLGYQAGNLQYASMGSDLNTSMAR---PPYDRCQYSRHN----- 363
           P+  G  +R  R  L  LG   GN++  SM +D+N S+ +   P   RC+    N     
Sbjct: 173 PEEAGAYLRKLRMILRYLGTCDGNMEEGSMRADVNVSVRKAGEPFRTRCEIKNVNSIRYV 232

Query: 362 ----ELDGIRAVDMQWEALG 315
               E++ +R V++ WE+ G
Sbjct: 233 MQAIEVEAVRQVEI-WESGG 251


>tr|Q6ISY1|Q6ISY1_MICAE Ferric uptake regulator (Fur protein)
           OS=Microcystis aeruginosa PCC 7806 GN=fur PE=4 SV=1
          Length = 183

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 64  PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 186
           P P H  H++C   N + EF++   L H L+ C+    KEG
Sbjct: 91  PYPHHHHHLVCIQCNKTIEFNNDSILKHSLKQCE----KEG 127