BP915284
Clone id YMU001_000069_G01
Library
Length 315
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTGTGAAGTTATACAATACCCTTTAAGCAGTTCTGGGTTGGCAAGAAACCAAAAAAGGGC
CACAAAATGATCATATAGCCTTAACAGCCAGATAACATGGCGTGTGTCCGCTATACAAAG
TAAGGATCTCAGTAAGAACCATCACTGAGAAATGGCCATAAAGTATTCACTACAAGTTCC
GCATCACAAGTGGCATTTCCAAAAACCCTTAAGCTTGCTTCCACATTAGTGAATTGCAGG
TAATTGTGCCCAGCAATCGTTCAATGGCTTGTCATACAAAATTCCAATGACTTCTCACAA
ACTAGAGGGCGCGCC
■■Homology search results ■■ -
sp_hit_id P48415
Definition sp|P48415|SEC16_YEAST COPII coat assembly protein SEC16 OS=Saccharomyces cerevisiae
Align length 61
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915284|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G01.
(315 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P48415|SEC16_YEAST COPII coat assembly protein SEC16 OS=Sacch... 30 4.9

>sp|P48415|SEC16_YEAST COPII coat assembly protein SEC16
OS=Saccharomyces cerevisiae GN=SEC16 PE=1 SV=2
Length = 2195

Score = 29.6 bits (65), Expect = 4.9
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2

Query: 107 SAIQSKDLSKNHH*EMAIKYSLQVPHHKWHFQKPLSLLPH**IAGNCAQQSFNGLSYKIP 286
S+I S ++N H A +Y+ P+++ +Q P + P +AGN + QS SY +P
Sbjct: 840 SSISSYTPNQNEH---ASRYA---PNYQQSYQVPYTSQPVGPVAGNSSYQSQTRSSYAVP 893

Query: 287 M 289
M
Sbjct: 894 M 894


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915284|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G01.
(315 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******