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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915288
Clone id YMU001_000069_G06
Library
Length 154
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTCTCTAAATCAATGTCAGCTTGGAACTGCAGTGCTCTGAGGATAGCAAGTCTCAAGCT
TTGGCAGGAGAGCACGCCACGCATCTGCAGTATCACTTGCTAGTTGCCCTTGTGTTCGAG
CAAACTCGTAGAAAACAGCACTCAGATCACGAGT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915288|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G06.
         (154 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9NXN5
Definition tr|A9NXN5|A9NXN5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 42
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915288|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G06.
         (154 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NXN5|A9NXN5_PICSI Putative uncharacterized protein OS=Picea...    55   2e-06
tr|B4FI08|B4FI08_MAIZE Putative uncharacterized protein OS=Zea m...    50   4e-05
tr|B4FH87|B4FH87_MAIZE Putative uncharacterized protein OS=Zea m...    50   4e-05
tr|A7PPA3|A7PPA3_VITVI Chromosome chr8 scaffold_23, whole genome...    50   4e-05
tr|Q5N7G9|Q5N7G9_ORYSJ cDNA clone:J013066C10, full insert sequen...    50   7e-05
tr|A2ZZT8|A2ZZT8_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|A2WX83|A2WX83_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q9FG38|Q9FG38_ARATH Sorting nexin-like protein (At5g06140) OS...    47   5e-04
tr|Q8RXM2|Q8RXM2_ARATH Putative sorting nexin protein (Fragment)...    47   5e-04
tr|Q70YZ8|Q70YZ8_BRAOL Sorting nexin 1 OS=Brassica oleracea GN=s...    45   0.002
tr|A9ST27|A9ST27_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 

>tr|A9NXN5|A9NXN5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 408

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETCYPQSTA 29
           T DL +VF+EFA+ Q QLA+D A+AWR LLPKLE+C   + A
Sbjct: 361 TLDLGSVFHEFAKGQAQLANDIAEAWRTLLPKLESCSQNAIA 402


>tr|B4FI08|B4FI08_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 399

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETC 47
           T D+   F+EFA+ Q +LA D ADAWR++LPKLE C
Sbjct: 361 TADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEAC 396


>tr|B4FH87|B4FH87_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 260

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETC 47
           T D+   F+EFA+ Q +LA D ADAWR++LPKLE C
Sbjct: 222 TADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEAC 257


>tr|A7PPA3|A7PPA3_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021573001
           PE=4 SV=1
          Length = 400

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETCYP 41
           T D+   F+EFA+ Q +LA+  ADAWR+L+PKLE+C P
Sbjct: 362 TLDMGLAFHEFAKGQARLANGIADAWRSLIPKLESCSP 399


>tr|Q5N7G9|Q5N7G9_ORYSJ cDNA clone:J013066C10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0423B08.9 PE=2 SV=1
          Length = 399

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETC 47
           T D+   F+EFA+ Q +LA D ADAWR +LPKLE C
Sbjct: 361 TADIGFAFHEFAKGQAKLAKDIADAWRGVLPKLEAC 396


>tr|A2ZZT8|A2ZZT8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004060 PE=4 SV=1
          Length = 396

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETC 47
           T D+   F+EFA+ Q +LA D ADAWR +LPKLE C
Sbjct: 358 TADIGFAFHEFAKGQAKLAKDIADAWRGVLPKLEAC 393


>tr|A2WX83|A2WX83_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04526 PE=4 SV=1
          Length = 396

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETC 47
           T D+   F+EFA+ Q +LA D ADAWR +LPKLE C
Sbjct: 358 TADIGFAFHEFAKGQAKLAKDIADAWRGVLPKLEAC 393


>tr|Q9FG38|Q9FG38_ARATH Sorting nexin-like protein (At5g06140)
           OS=Arabidopsis thaliana GN=At5g06140 PE=2 SV=1
          Length = 402

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETCY 44
           T ++   F++FA+ Q +LA+  ADAWR+LLPKLE  Y
Sbjct: 364 TEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASY 400


>tr|Q8RXM2|Q8RXM2_ARATH Putative sorting nexin protein (Fragment)
           OS=Arabidopsis thaliana GN=At5g06140 PE=2 SV=1
          Length = 233

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLETCY 44
           T ++   F++FA+ Q +LA+  ADAWR+LLPKLE  Y
Sbjct: 195 TEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASY 231


>tr|Q70YZ8|Q70YZ8_BRAOL Sorting nexin 1 OS=Brassica oleracea GN=snx1
           PE=2 SV=1
          Length = 401

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 154 TRDLSAVFYEFARTQGQLASDTADAWRALLPKLE 53
           T ++   F++FA+ Q +LA+  ADAWRALLPKLE
Sbjct: 363 TEEMGVAFHQFAKGQARLANGIADAWRALLPKLE 396