NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915289
Clone id YMU001_000069_G07
Library
Length 460
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTTGGCCAAAAGGGGCCAACCAAGTGGTTAATGTGCATATGTTAAGCTGGTTTGATATGT
AAAGTGTGGAATTCACCTTCCACCCCAACCAGGGCTCAACCCCCATGGAATTACAATAAC
TTGCACCCAAATTAAAGAGGATGTAGACACTCTTGTGTGCTCTATTGAAAATTTACAAGA
TACTGATTGAGAGAAACCTGTGTGTTCAAAATCCACAGCTCATGTCCTCTCCATTGTTGA
GATGGAGAATGCATCCGGTGCTGCTACGTGGCTCGCAGCTTCTGAGCACACAACAGTTGA
TATATGCTGGGAGATGTGTGTCGCCCTCGGATTCGCAAGTTGCGTACGCAGTGTCATAGT
AGACGTCGATACATGCCACATTGCCACAACCGTGGCCTATCTGAGCTTGCAGCTTCCTTG
AAGCTACATGCCTTCCAACTTGTCCTTCGACGCAGAGAGT
■■Homology search results ■■ -
sp_hit_id P0C581
Definition sp|P0C581|PAN2_NEUCR PAB-dependent poly(A)-specific ribonuclease subunit pan-2 OS=Neurospora crassa
Align length 64
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915289|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G07.
         (460 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C581|PAN2_NEUCR PAB-dependent poly(A)-specific ribonuclease...    30   3.8  
sp|Q7VVM4|GUAA_BORPE GMP synthase [glutamine-hydrolyzing] OS=Bor...    30   6.5  
sp|Q7WK13|GUAA_BORBR GMP synthase [glutamine-hydrolyzing] OS=Bor...    30   6.5  
sp|Q8N6F8|WBS27_HUMAN Williams-Beuren syndrome chromosomal regio...    30   6.6  
sp|Q76LX8|ATS13_HUMAN A disintegrin and metalloproteinase with t...    29   8.5  
sp|P31696|AGRIN_CHICK Agrin OS=Gallus gallus GN=AGRN PE=1 SV=2         29   8.5  

>sp|P0C581|PAN2_NEUCR PAB-dependent poly(A)-specific ribonuclease
           subunit pan-2 OS=Neurospora crassa GN=pan-2 PE=3 SV=1
          Length = 1236

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 159 ALLKIY-KILIERNLCVQNPQLMSSPLLRWRMHPVLLRGSQLLSTQQLIYAGRCVSPSDS 335
           A+L  Y K+   +N+   NP   +      RMHP +L  + +++    I+    ++PS+S
Sbjct: 213 AILDPYVKVFDLKNMSAMNPVPFAPLAAHVRMHPRMLTTAIVVNQAGQIHVTDLLNPSNS 272

Query: 336 QVAY 347
           QV Y
Sbjct: 273 QVCY 276


>sp|Q7VVM4|GUAA_BORPE GMP synthase [glutamine-hydrolyzing]
           OS=Bordetella pertussis GN=guaA PE=3 SV=1
          Length = 530

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 337 CESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMS 218
           C  EGD ++P YI+  V R  E   S   IL L+ G D S
Sbjct: 200 CGCEGDWNMPDYISEAVARIREQVGSDEVILGLSGGVDSS 239


>sp|Q7WK13|GUAA_BORBR GMP synthase [glutamine-hydrolyzing]
           OS=Bordetella bronchiseptica GN=guaA PE=3 SV=1
          Length = 530

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 337 CESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMS 218
           C  EGD ++P YI+  V R  E   S   IL L+ G D S
Sbjct: 200 CGCEGDWNMPDYISEAVARIREQVGSDEVILGLSGGVDSS 239


>sp|Q8N6F8|WBS27_HUMAN Williams-Beuren syndrome chromosomal region
           27 protein OS=Homo sapiens GN=WBSCR27 PE=2 SV=1
          Length = 245

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 455 LRRRTSWKACSFKEAASSDRPRLWQCGMYRRLL*HCVRNLRIRGRHTSPS 306
           L  RT+W    +KEA  +   RL Q GM+  L+   V  L   G    PS
Sbjct: 165 LTTRTNWSNLQYKEALEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPS 214


>sp|Q76LX8|ATS13_HUMAN A disintegrin and metalloproteinase with
           thrombospondin motifs 13 OS=Homo sapiens GN=ADAMTS13
           PE=1 SV=1
          Length = 1427

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 382 NVACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTG 254
           N +C+D        T + +G    PA+   CVL  C P  + G
Sbjct: 707 NYSCLDQARKELVETVQCQGSQQPPAWPEACVLEPCPPYWAVG 749


>sp|P31696|AGRIN_CHICK Agrin OS=Gallus gallus GN=AGRN PE=1 SV=2
          Length = 2073

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 263  ATWLAASEHTTVDICWEMCVALGFASCVRSVIVDVDTCHI 382
            A WL   E  +V        + GF  C+R VIVD    H+
Sbjct: 2018 ALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHL 2057
tr_hit_id B6SSS5
Definition tr|B6SSS5|B6SSS5_MAIZE Type II proteinase inhibitor family protein OS=Zea mays
Align length 57
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915289|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_G07.
         (460 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SSS5|B6SSS5_MAIZE Type II proteinase inhibitor family prote...    47   4e-04
tr|A3FMA3|A3FMA3_MAIZE Putative serine type endopeptidase inhibi...    47   4e-04
tr|Q6AVT6|Q6AVT6_ORYSJ Os03g0734300 protein OS=Oryza sativa subs...    44   0.004
tr|A2XLR0|A2XLR0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|A7QCG3|A7QCG3_VITVI Chromosome chr12 scaffold_78, whole genom...    37   0.64 
tr|Q9C7G9|Q9C7G9_ARATH Putative uncharacterized protein F28P5.12...    33   5.4  
tr|Q6NQ47|Q6NQ47_ARATH At1g72060 OS=Arabidopsis thaliana PE=4 SV=1     33   5.4  
tr|A4RS49|A4RS49_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   5.4  
tr|B4JQ32|B4JQ32_DROGR GH13633 OS=Drosophila grimshawi GN=GH1363...    33   5.4  
tr|A9IRB5|A9IRB5_BORPD Putative methyltransferase OS=Bordetella ...    33   9.2  
tr|A9B4N5|A9B4N5_HERA2 UbiA prenyltransferase OS=Herpetosiphon a...    33   9.2  

>tr|B6SSS5|B6SSS5_MAIZE Type II proteinase inhibitor family protein
           OS=Zea mays PE=4 SV=1
          Length = 78

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 28/57 (49%)
 Frame = -1

Query: 385 GNVACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           G VAC     D  Y TC S G   LPA  NCC+       +  GC LHL++G   +C
Sbjct: 28  GAVACPQFCLDVDYVTCPSSGSEKLPASCNCCM-------TPKGCTLHLSDGTQQTC 77


>tr|A3FMA3|A3FMA3_MAIZE Putative serine type endopeptidase inhibitor
           OS=Zea mays PE=4 SV=1
          Length = 78

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 28/57 (49%)
 Frame = -1

Query: 385 GNVACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           G VAC     D  Y TC S G   LPA  NCC+       +  GC LHL++G   +C
Sbjct: 28  GAVACPQFCLDVDYVTCPSSGSEKLPARCNCCM-------TPKGCTLHLSDGTQQTC 77


>tr|Q6AVT6|Q6AVT6_ORYSJ Os03g0734300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0027J18.15 PE=4 SV=1
          Length = 82

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 385 GNVACIDVYYD-TAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           G   C    YD   Y TC S G  HL    NCC+          GC+L+LNNG+ ++C
Sbjct: 30  GGKFCPQFCYDGLEYMTCPSTGSQHLKPACNCCI------AGEKGCVLYLNNGQVINC 81


>tr|A2XLR0|A2XLR0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13414 PE=4 SV=1
          Length = 82

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 385 GNVACIDVYYD-TAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           G   C    YD   Y TC S G  HL    NCC+          GC+L+LNNG+ ++C
Sbjct: 30  GGKFCPQFCYDGLEYMTCPSTGSQHLKPACNCCI------AGEKGCVLYLNNGQVINC 81


>tr|A7QCG3|A7QCG3_VITVI Chromosome chr12 scaffold_78, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035384001
           PE=3 SV=1
          Length = 143

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -1

Query: 385 GNVACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           G  AC     D  Y TC S G+  L A  NCC+       +   C LHL +G ++ C
Sbjct: 93  GAKACPLYCLDVDYMTCVSSGEEKLTAPCNCCL-------APKQCTLHLVDGSEVQC 142


>tr|Q9C7G9|Q9C7G9_ARATH Putative uncharacterized protein F28P5.12
           (Putative uncharacterized protein At1g72060)
           OS=Arabidopsis thaliana GN=At1g72060 PE=2 SV=1
          Length = 81

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 379 VACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           +AC        Y TC S G   LP   NCC+       +   C LHL++   + C
Sbjct: 32  IACPLYCLQVEYMTCPSSGADKLPPRCNCCL-------APKNCTLHLSDSTTIHC 79


>tr|Q6NQ47|Q6NQ47_ARATH At1g72060 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 97

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 379 VACIDVYYDTAYATCESEGDTHLPAYINCCVLRSCEPRSSTGCILHLNNGEDMSC 215
           +AC        Y TC S G   LP   NCC+       +   C LHL++   + C
Sbjct: 48  IACPLYCLQVEYMTCPSSGADKLPPRCNCCL-------APKNCTLHLSDSTTIHC 95


>tr|A4RS49|A4RS49_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_86314 PE=4 SV=1
          Length = 1041

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 304 MLGDVCRPRIRKLRTQCHSRRRYMPHCHNRGLSEL-AASLKLHAFQLV 444
           M  D CR R R+LRT+  +RRR  P    R + E  A   + H++ L+
Sbjct: 95  MFEDACRLRARELRTRAEARRRRAPSVAKREVGEAEALEREAHSWSLI 142


>tr|B4JQ32|B4JQ32_DROGR GH13633 OS=Drosophila grimshawi GN=GH13633
           PE=4 SV=1
          Length = 1341

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 313 DVCRPRIRKLRTQCHSRRRYMPHCHNRGLSELAASLKLHAFQLV 444
           +VC+       T C++R RYMP+ HNR  +  AA   + +  L+
Sbjct: 87  EVCQYAHANGSTSCYNRNRYMPYNHNRACAAAAAEAAVSSHPLM 130


>tr|A9IRB5|A9IRB5_BORPD Putative methyltransferase OS=Bordetella
           petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
           GN=Bpet2811 PE=4 SV=1
          Length = 556

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 168 KIYKILIERNLCVQNPQLMSSPLLRWRMHPVLLRGSQLLSTQQLIYAGRCVSPSDSQVAY 347
           K  ++L++   C     L  +P L+WR HP  L     L T+ L  A RCV+P   ++ Y
Sbjct: 334 KAQRVLVDAP-CSGIGTLRRNPDLKWRQHPEALTELCALQTRILNSAARCVAPG-GRLVY 391

Query: 348 A 350
           A
Sbjct: 392 A 392