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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915294
Clone id YMU001_000069_H01
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGTTCTAACGTTTGGATTGTTGTGCGTACTGTGTATACTTTGGGCGCCATCTTCGAAGC
TGGCAAAGTTTGATTATACGGATGAGACTGCTAAAGATTTTGATGAACCAGGAAGCTCTT
CCTTTGAACTTGGTAGTCGTGGAGCCAGAACAGATTGCTTCAGAGATTGACAGAAAGGAA
AGGAAGGCCTTAACCAGTAGTGGATTCATTCTTGATGACAACTCCGAGGAAGACAAAAGG
GAGTAGCCTTCCAAAATCAATGCAGCACATGCAGATCAAATGAAATGGCGCCCCTGGTAT
TTGTGTAAACATGGAGCATTTTTTAACTTGTAACATTCATCATGGCAGATCCTCTTGTAC
ATATAGACCACAAGTCGTGGTGAGAAGTAGGTGGATGGAAGCTTGATCTCCACTCAATCA
GAAATTGTGCCCT
■■Homology search results ■■ -
sp_hit_id Q14DK4
Definition sp|Q14DK4|PLSBL_MOUSE Glycerol-3-phosphate acyltransferase-like protein 1 OS=Mus musculus
Align length 42
Score (bit) 33.9
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915294|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_H01.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14DK4|PLSBL_MOUSE Glycerol-3-phosphate acyltransferase-like ...    34   0.29 
sp|Q83G52|SYI_TROWT Isoleucyl-tRNA synthetase OS=Tropheryma whip...    30   3.2  
sp|Q83I16|SYI_TROW8 Isoleucyl-tRNA synthetase OS=Tropheryma whip...    30   3.2  
sp|Q9XF38|PROF_PYRCO Profilin OS=Pyrus communis PE=1 SV=1              30   3.2  
sp|Q9XF40|PROF1_MALDO Profilin-1 OS=Malus domestica PE=1 SV=1          30   4.2  
sp|Q75BE5|ATG14_ASHGO Autophagy-related protein 14 OS=Ashbya gos...    30   5.5  
sp|Q54DK1|SQRD_DICDI Sulfide:quinone oxidoreductase, mitochondri...    29   7.1  
sp|Q9M7M9|PROF4_HEVBR Profilin-4 OS=Hevea brasiliensis PE=1 SV=1       29   7.1  
sp|Q09459|YQ38_CAEEL Uncharacterized protein C09G5.8 OS=Caenorha...    29   7.3  
sp|Q9LEI8|PROF6_HEVBR Profilin-6 OS=Hevea brasiliensis PE=1 SV=1       29   9.3  

>sp|Q14DK4|PLSBL_MOUSE Glycerol-3-phosphate acyltransferase-like
           protein 1 OS=Mus musculus PE=2 SV=2
          Length = 801

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 36  ILWAPSSKLAKFDYTDETAKDFDEPGSSSFELGSRGARTDCF 161
           +LW PS      D+TD  + DF+EPG   F L  +    D F
Sbjct: 657 LLWKPSG-----DFTDSESDDFEEPGGRCFRLSQQSRCPDFF 693


>sp|Q83G52|SYI_TROWT Isoleucyl-tRNA synthetase OS=Tropheryma
           whipplei (strain Twist) GN=ileS PE=3 SV=2
          Length = 1056

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 128 FKGRASWFIKIFSSLIRIIKLCQLRRWRPKYTQYAQQSK 12
           +K   SWF +I  S+ R+++L Q   W PK  +  Q +K
Sbjct: 436 YKAVTSWFFRITDSVNRMLELNQQINWVPKSVKNGQFAK 474


>sp|Q83I16|SYI_TROW8 Isoleucyl-tRNA synthetase OS=Tropheryma
           whipplei (strain TW08/27) GN=ileS PE=3 SV=1
          Length = 1056

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 128 FKGRASWFIKIFSSLIRIIKLCQLRRWRPKYTQYAQQSK 12
           +K   SWF +I  S+ R+++L Q   W PK  +  Q +K
Sbjct: 436 YKAVTSWFFRITDSVNRMLELNQQINWVPKSVKNGQFAK 474


>sp|Q9XF38|PROF_PYRCO Profilin OS=Pyrus communis PE=1 SV=1
          Length = 131

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 39  LWAPSSKLAKFDYTDETA--KDFDEPGS 116
           +WA SS   KF   + TA  KDFDEPGS
Sbjct: 32  VWAQSSTFPKFKPEEITAIMKDFDEPGS 59


>sp|Q9XF40|PROF1_MALDO Profilin-1 OS=Malus domestica PE=1 SV=1
          Length = 131

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 39  LWAPSSKLAKFDYTDETA--KDFDEPGS 116
           +WA SS   KF   + TA  KDFDEPGS
Sbjct: 32  VWAHSSTFPKFKPEEITAIMKDFDEPGS 59


>sp|Q75BE5|ATG14_ASHGO Autophagy-related protein 14 OS=Ashbya
           gossypii GN=ATG14 PE=3 SV=1
          Length = 308

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
 Frame = -3

Query: 173 LSISEAICSGSTTTKFKGRASWFIKIFSSL--------IRIIKLCQLRRWR 45
           L++ + + S  +T KF+    WF+   S+         IR I +C +R WR
Sbjct: 131 LTLLQNVVSMKSTQKFEELCQWFVFTCSTTEDDHFPYSIRFIPVCNIRNWR 181


>sp|Q54DK1|SQRD_DICDI Sulfide:quinone oxidoreductase, mitochondrial
           OS=Dictyostelium discoideum GN=sqrdl PE=3 SV=1
          Length = 452

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 36  ILWAPSSKLAKFDYTDETAKDFDEPGSSSFELGSRGARTDCFRD*QKGKE-GLNQ*WIHS 212
           ILW     L K    D+   DF+  G+S F +       D     +  KE G+NQ + H+
Sbjct: 211 ILWLCDDYLRKHGIRDKVRLDFNSAGASMFPVKKYSEVLD-----KMAKERGVNQNFAHN 265

Query: 213 **QLRGRQKGVAFQ 254
             +++G  K   F+
Sbjct: 266 LVEIKGDSKEAVFE 279


>sp|Q9M7M9|PROF4_HEVBR Profilin-4 OS=Hevea brasiliensis PE=1 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = +3

Query: 39  LWAPSSKLAKFDYTDETA---KDFDEPGS---SSFELGS 137
           +WA SS   +F  +DE A   KDFDEPGS   +   LGS
Sbjct: 32  VWAQSSSFPQFK-SDEVAAIMKDFDEPGSLAPTGLHLGS 69


>sp|Q09459|YQ38_CAEEL Uncharacterized protein C09G5.8
           OS=Caenorhabditis elegans GN=C09G5.8 PE=2 SV=2
          Length = 1531

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 299 ICVNMEHFLTCNIHHGRSSCTYRPQVVVR 385
           IC++ EHF  C I      C YR ++  R
Sbjct: 117 ICIDFEHFSHCFIQEHGKYCGYRSEITAR 145


>sp|Q9LEI8|PROF6_HEVBR Profilin-6 OS=Hevea brasiliensis PE=1 SV=1
          Length = 131

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 39  LWAPSSKLAKFDYTDETA---KDFDEPGS 116
           +WA SS   +F  +DE A   KDFDEPGS
Sbjct: 32  VWAQSSSFPQFK-SDEVAAVMKDFDEPGS 59
tr_hit_id A9NJT3
Definition tr|A9NJT3|A9NJT3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 35
Score (bit) 50.4
E-value 7.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915294|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_H01.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJT3|A9NJT3_PICSI Putative uncharacterized protein OS=Picea...    50   7e-09
tr|B8LQ63|B8LQ63_PICSI Putative uncharacterized protein OS=Picea...    47   2e-08
tr|A9RV88|A9RV88_PHYPA Predicted protein OS=Physcomitrella paten...    43   1e-07
tr|A9S9W2|A9S9W2_PHYPA Predicted protein OS=Physcomitrella paten...    42   2e-06
tr|A7PYV2|A7PYV2_VITVI Chromosome chr12 scaffold_38, whole genom...    51   1e-05
tr|Q2R2X1|Q2R2X1_ORYSJ Lung seven transmembrane receptor family ...    41   4e-05
tr|A3CC61|A3CC61_ORYSJ Putative uncharacterized protein OS=Oryza...    41   4e-05
tr|A2ZF63|A2ZF63_ORYSI Putative uncharacterized protein OS=Oryza...    41   4e-05
tr|Q8GYD0|Q8GYD0_ARATH Putative uncharacterized protein At1g6167...    47   5e-04
tr|A7P6G1|A7P6G1_VITVI Chromosome chr9 scaffold_7, whole genome ...    46   8e-04
tr|A5CA53|A5CA53_VITVI Putative uncharacterized protein OS=Vitis...    46   8e-04
tr|A5C8D1|A5C8D1_VITVI Putative uncharacterized protein OS=Vitis...    45   0.001
tr|A7QFP3|A7QFP3_VITVI Chromosome chr8 scaffold_88, whole genome...    45   0.002
tr|A2Q492|A2Q492_MEDTR Lung seven transmembrane receptor OS=Medi...    43   0.009
tr|Q10LU2|Q10LU2_ORYSJ Os03g0334800 protein OS=Oryza sativa subs...    42   0.012
tr|B8ANZ7|B8ANZ7_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.026
tr|A7Q3Y0|A7Q3Y0_VITVI Chromosome chr13 scaffold_48, whole genom...    40   0.058
tr|B4FGE8|B4FGE8_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|Q00U00|Q00U00_OSTTA Predicted membrane protein (ISS) OS=Ostre...    38   0.22 
tr|Q8H399|Q8H399_ORYSJ Putative membrane protein PTM1 OS=Oryza s...    38   0.29 
tr|Q0D4P4|Q0D4P4_ORYSJ Os07g0614600 protein OS=Oryza sativa subs...    38   0.29 
tr|B7F9V1|B7F9V1_ORYSJ cDNA, clone: J090095G09, full insert sequ...    38   0.29 
tr|A2YNN9|A2YNN9_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q69P89|Q69P89_ORYSJ Os09g0439700 protein OS=Oryza sativa subs...    37   0.38 
tr|B4F8U5|B4F8U5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.38 
tr|A2Z1N7|A2Z1N7_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|Q56XK7|Q56XK7_ARATH Putative uncharacterized protein At2g0107...    35   1.9  
tr|B1AW16|B1AW16_MOUSE Novel protein OS=Mus musculus GN=RP23-105...    34   4.2  
tr|Q174X0|Q174X0_AEDAE Putative uncharacterized protein OS=Aedes...    33   5.4  
tr|A4S8K7|A4S8K7_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   5.5  

>tr|A9NJT3|A9NJT3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 79

 Score = 50.4 bits (119), Expect(2) = 7e-09
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDE 107
           +L+F LLCVLC+LWAPS    ++ Y++E  +DFDE
Sbjct: 1   MLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDE 35



 Score = 32.7 bits (73), Expect(2) = 7e-09
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 169 DRKERKALTSSGFILDDNSEEDKRE 243
           + KERKA+ +  F LD+++EEDKRE
Sbjct: 55  EMKERKAVNTDVFSLDEDTEEDKRE 79


>tr|B8LQ63|B8LQ63_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 321

 Score = 47.4 bits (111), Expect(2) = 2e-08
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSSS 122
           VL+F LLCV+C LWAPS    ++ Y+D+  +DF E  + S
Sbjct: 240 VLSFSLLCVICALWAPSQNSTRYAYSDDVGEDFGEEETMS 279



 Score = 33.9 bits (76), Expect(2) = 2e-08
 Identities = 15/43 (34%), Positives = 30/43 (69%)
 Frame = +1

Query: 115 ALPLNLVVVEPEQIASEIDRKERKALTSSGFILDDNSEEDKRE 243
           +L  +  +V+  + +++ ++KERK ++   F L+D++EEDKRE
Sbjct: 279 SLTKSFAMVDGVENSTKPEKKERKEMSKDVFSLNDDTEEDKRE 321


>tr|A9RV88|A9RV88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119808 PE=4 SV=1
          Length = 523

 Score = 42.7 bits (99), Expect(2) = 1e-07
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDE 107
           VL F LL V+C+LWAPS    ++ Y++E  +D DE
Sbjct: 437 VLAFILLIVICVLWAPSQNSTRYAYSEEVGEDLDE 471



 Score = 36.2 bits (82), Expect(2) = 1e-07
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 133 VVVEPEQIASEIDRKERKALTSSGFILDDNSEEDKRE 243
           ++VE E+   + D KERK++ +  F LDD+ EEDKR+
Sbjct: 487 LIVEIEKSGVKPDSKERKSVNTDVFSLDDDLEEDKRD 523


>tr|A9S9W2|A9S9W2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182646 PE=4 SV=1
          Length = 523

 Score = 42.4 bits (98), Expect(2) = 2e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDE 107
           VL F +L V+CILWAPS    ++ Y++E  +D DE
Sbjct: 440 VLAFIILVVICILWAPSQNSTRYAYSEEVGEDLDE 474



 Score = 32.3 bits (72), Expect(2) = 2e-06
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 133 VVVEPEQIASEIDRKERKALTSSGFILDDNSEEDKRE 243
           +V+E E+   + D  ERK + +  F LDD+ EEDKR+
Sbjct: 487 LVLEVEKSGVKPDAIERKPINTDVFSLDDDLEEDKRD 523


>tr|A7PYV2|A7PYV2_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026589001
           PE=4 SV=1
          Length = 512

 Score = 50.8 bits (120), Expect(2) = 1e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSSSFELG 134
           +L FGLLCV+C LWAPS    ++ Y+DE  ++FD+  + S   G
Sbjct: 445 ILAFGLLCVICYLWAPSQSSQRYAYSDEKGEEFDDEETQSLTRG 488



 Score = 21.2 bits (43), Expect(2) = 1e-05
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 LDDNSEEDKRE 243
           L+D  EEDKRE
Sbjct: 502 LEDEEEEDKRE 512


>tr|Q2R2X1|Q2R2X1_ORYSJ Lung seven transmembrane receptor family
           protein, expressed OS=Oryza sativa subsp. japonica
           GN=Os11g0546100 PE=4 SV=1
          Length = 514

 Score = 40.8 bits (94), Expect(2) = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSS 119
           VL F LL V+C LWAPS    ++ Y+ E A D DE   S
Sbjct: 438 VLAFVLLLVICYLWAPSQSSQRYAYSGEAADDDDEESQS 476



 Score = 29.3 bits (64), Expect(2) = 4e-05
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 KERKALTSSGFILDDNSEEDKRE 243
           K+R    SS F L+D +EEDKRE
Sbjct: 492 KDRSGGVSSAFSLEDEAEEDKRE 514


>tr|A3CC61|A3CC61_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032883 PE=4 SV=1
          Length = 514

 Score = 40.8 bits (94), Expect(2) = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSS 119
           VL F LL V+C LWAPS    ++ Y+ E A D DE   S
Sbjct: 438 VLAFVLLLVICYLWAPSQSSQRYAYSGEAADDDDEESQS 476



 Score = 29.3 bits (64), Expect(2) = 4e-05
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 KERKALTSSGFILDDNSEEDKRE 243
           K+R    SS F L+D +EEDKRE
Sbjct: 492 KDRSGGVSSAFSLEDEAEEDKRE 514


>tr|A2ZF63|A2ZF63_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36425 PE=4 SV=1
          Length = 514

 Score = 40.8 bits (94), Expect(2) = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSS 119
           VL F LL V+C LWAPS    ++ Y+ E A D DE   S
Sbjct: 438 VLAFVLLLVICYLWAPSQSSQRYAYSGEAADDDDEESQS 476



 Score = 29.3 bits (64), Expect(2) = 4e-05
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 175 KERKALTSSGFILDDNSEEDKRE 243
           K+R    SS F L+D +EEDKRE
Sbjct: 492 KDRSGGVSSAFSLEDEAEEDKRE 514


>tr|Q8GYD0|Q8GYD0_ARATH Putative uncharacterized protein
           At1g61670/T13M11_2 OS=Arabidopsis thaliana
           GN=At1g61670/T13M11_2 PE=2 SV=1
          Length = 513

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDEPGSS 119
           +L++GLL V+CILWAPS+   ++ Y  ET  +F+E G S
Sbjct: 444 LLSYGLLAVICILWAPSNNPTRYSYLAETGDEFEEEGIS 482


>tr|A7P6G1|A7P6G1_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034052001
           PE=4 SV=1
          Length = 510

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +3

Query: 3   VLTFGLLCVLCILWAPSSKLAKFDYTDETAKDFDE 107
           VL+F LLCV+C LWAPS    ++ Y+D+ +++FD+
Sbjct: 433 VLSFSLLCVICALWAPSQNSTRYAYSDDGSEEFDK 467