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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915296
Clone id YMU001_000069_H04
Library
Length 238
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000069_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAATTGGTCATGCCTTTGACTCAACCATAGAAGACTCTACCAGCATTGCAATAGGCACAT
ATGTTGTAGGCTTTAGAAAACCCAGCTCCATCTTCTTCTTCATTTTGGCCAGATACACCA
CGTCTTCATAGGTATTAGCATCGTCTTCCACCTTATCTCTCATCCTTGAATGCAAGCACT
CAAGAAACTTTGACAACTTCAAAAAGTGATTGCCTTTCACCCCTGTGGTGGCAGCCTC
■■Homology search results ■■ -
sp_hit_id P27548
Definition sp|P27548|CD40L_MOUSE CD40 ligand OS=Mus musculus
Align length 31
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915296|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_H04.
         (238 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27548|CD40L_MOUSE CD40 ligand OS=Mus musculus GN=Cd40lg PE=1...    32   1.3  
sp|O97605|CD40L_FELCA CD40 ligand OS=Felis silvestris catus GN=C...    32   1.3  
sp|O97626|CD40L_CANFA CD40 ligand OS=Canis familiaris GN=CD40LG ...    32   1.3  
sp|Q5R192|GCSP_IDILO Glycine dehydrogenase [decarboxylating] OS=...    31   2.2  
sp|Q9Z2V2|CD40L_RAT CD40 ligand OS=Rattus norvegicus GN=Cd40lg P...    31   2.2  

>sp|P27548|CD40L_MOUSE CD40 ligand OS=Mus musculus GN=Cd40lg PE=1
           SV=2
          Length = 260

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 187 FLECLHSRMRDKVEDDANTYEDVVYLAKMKK 95
           F   LH R+ DKVE++ N +ED V++ K+K+
Sbjct: 42  FAVYLHRRL-DKVEEEVNLHEDFVFIKKLKR 71


>sp|O97605|CD40L_FELCA CD40 ligand OS=Felis silvestris catus
           GN=CD40LG PE=2 SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 187 FLECLHSRMRDKVEDDANTYEDVVYLAKMKK 95
           F   LH R+ DK+ED+ N YED V++  ++K
Sbjct: 42  FAVYLHRRL-DKIEDERNLYEDFVFMKTLQK 71


>sp|O97626|CD40L_CANFA CD40 ligand OS=Canis familiaris GN=CD40LG
           PE=2 SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 187 FLECLHSRMRDKVEDDANTYEDVVYLAKMKK 95
           F   LH R+ DK+ED+ N YED V++  ++K
Sbjct: 42  FAVYLHRRL-DKIEDERNLYEDFVFMKTLQK 71


>sp|Q5R192|GCSP_IDILO Glycine dehydrogenase [decarboxylating]
            OS=Idiomarina loihiensis GN=gcvP PE=3 SV=1
          Length = 962

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
 Frame = -1

Query: 238  EAATTGVKGNHFL--KLSKFLECLHSRMRDKVED----DANTYEDVVYLAKM---KKKME 86
            EA+ T +   ++L  KLSK  + L+    ++V      D    +D   +A++   K+  +
Sbjct: 782  EASETAILNANYLAEKLSKHFKILYRGRNNRVAHECIIDLRPMKDAAGIAEIDVAKRLQD 841

Query: 85   LGFLKPTTYVPIA--MLVESSMVESKA 11
             GF  PT   P+A  ++VE +  ESKA
Sbjct: 842  YGFHSPTMSFPVAGTIMVEPTESESKA 868


>sp|Q9Z2V2|CD40L_RAT CD40 ligand OS=Rattus norvegicus GN=Cd40lg PE=2
           SV=2
          Length = 260

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = -1

Query: 187 FLECLHSRMRDKVEDDANTYEDVVYLAKMKK 95
           F   LH R+ DKVE++A+ +ED V++ K+K+
Sbjct: 42  FAVYLHRRL-DKVEEEASLHEDFVFVKKLKR 71
tr_hit_id A3ZNJ9
Definition tr|A3ZNJ9|A3ZNJ9_9PLAN Glycine dehydrogenase subunit 2 OS=Blastopirellula marina DSM 3645
Align length 72
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915296|Adiantum capillus-veneris mRNA, clone:
YMU001_000069_H04.
         (238 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3ZNJ9|A3ZNJ9_9PLAN Glycine dehydrogenase subunit 2 OS=Blasto...    33   5.4  

>tr|A3ZNJ9|A3ZNJ9_9PLAN Glycine dehydrogenase subunit 2
           OS=Blastopirellula marina DSM 3645 GN=DSM3645_17120 PE=4
           SV=1
          Length = 462

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -1

Query: 217 KGNHFLKLSKFLECLHSRMRDKVEDDANTYEDVVYLAKMKKKMELGFLKPTTY----VPI 50
           K  HFL +   L C+H  +    +      + V  +   K+ ++ GF  PT Y    VP 
Sbjct: 344 KIKHFLPVPHGLRCMHEFVASAAK--LKQEKGVTAMDIAKRLLDYGFHAPTVYFPLTVPE 401

Query: 49  AMLVESSMVESK 14
           AM+VE +  ESK
Sbjct: 402 AMMVEPTETESK 413