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NBDC - LSDB Archive
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BP915305
Clone id YMU001_000070_A03
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGCTGAGCAGCTCTACAGGAGAGCAGTGATGCTGGATGCCGGTGGCGATGGGGAGGCAA
TGGGGAGGTTTGCGAGCTTTTTGTGGGTGGTGAAAGGGGATGTAGAGGAAGCTGAGAGTG
CGTACAAGGCAGCGGTGACGGTGGATCCCACCAACGCGTATCATGCGGGGTGCTATGCGC
ACTTTATGTGGAACTCGAGTGCAGGCCAGGCTGAGGAGAACTCATGCTGTTGGATTGCAG
ACAATTTGGGCTCCAACTCTGAGCAGATGCCAAGCTCATGACAAGCCACCTACAAGCAAG
TTGCAATATGATGCCCATGTGATGAAGGCAGCCACCATCCTTTTTCCATCAACCCAAAGT
AGGGCAATGGGAGAAAGCTATAGTGTAAAGCTACAAATATTCAGCCTACTTTTTAACAG
■■Homology search results ■■ -
sp_hit_id O60494
Definition sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens
Align length 28
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915305|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_A03.
         (419 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3         31   2.2  
sp|Q5RDN3|PSMF1_PONAB Proteasome inhibitor PI31 subunit OS=Pongo...    30   4.9  
sp|Q92530|PSMF1_HUMAN Proteasome inhibitor PI31 subunit OS=Homo ...    30   4.9  
sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Hom...    29   6.4  
sp|Q95LT8|TT39B_MACFA Tetratricopeptide repeat protein 39B OS=Ma...    29   6.4  
sp|Q5VTQ0|TT39B_HUMAN Tetratricopeptide repeat protein 39B OS=Ho...    29   8.4  
sp|A1W465|SECA_ACISJ Protein translocase subunit secA OS=Acidovo...    29   8.4  
sp|Q6P730|DAB2P_RAT Disabled homolog 2-interacting protein OS=Ra...    29   8.4  
sp|Q3UHC7|DAB2P_MOUSE Disabled homolog 2-interacting protein OS=...    29   8.4  
sp|Q5VWQ8|DAB2P_HUMAN Disabled homolog 2-interacting protein OS=...    29   8.4  

>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3
          Length = 3623

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 397  FVALHYSFLPLPYFGLMEKGWWLPSSHG 314
            F++ +Y   P+PY+   E  WWL SSHG
Sbjct: 1176 FISPNY---PMPYYHSSECYWWLKSSHG 1200


>sp|Q5RDN3|PSMF1_PONAB Proteasome inhibitor PI31 subunit OS=Pongo
           abelii GN=PSMF1 PE=2 SV=1
          Length = 271

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 122 RTLSFLYIPFHHPQKARKPPHCLPI 48
           R +  L IP HHP  +R+PP C P+
Sbjct: 164 REVDPLRIPPHHPHTSRQPPWCDPL 188


>sp|Q92530|PSMF1_HUMAN Proteasome inhibitor PI31 subunit OS=Homo
           sapiens GN=PSMF1 PE=1 SV=2
          Length = 271

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 122 RTLSFLYIPFHHPQKARKPPHCLPI 48
           R +  L IP HHP  +R+PP C P+
Sbjct: 164 REVDPLRIPPHHPHTSRQPPWCDPL 188


>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo
           sapiens GN=TTC7A PE=1 SV=3
          Length = 858

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 90  VKGDVEEAESAYKAAVTVDP 149
           VKG++EEA+  YK A+TV+P
Sbjct: 757 VKGNLEEAKQLYKEALTVNP 776


>sp|Q95LT8|TT39B_MACFA Tetratricopeptide repeat protein 39B
           OS=Macaca fascicularis GN=TTC39B PE=2 SV=1
          Length = 632

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  VVKGDVEEAESAYKAAVTV-DPTNAYHAGCYAHFMW 191
           ++KG++EEA+  ++  V+V +    +H  CY   MW
Sbjct: 354 LLKGNLEEAQEVFRKCVSVQEEWKQFHHLCYWELMW 389


>sp|Q5VTQ0|TT39B_HUMAN Tetratricopeptide repeat protein 39B OS=Homo
           sapiens GN=TTC39B PE=2 SV=2
          Length = 616

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  VVKGDVEEAESAYKAAVTV-DPTNAYHAGCYAHFMW 191
           ++KG++EEA+  ++  V+V +    +H  CY   MW
Sbjct: 338 LLKGNLEEAQEVFQKCVSVQEEWKQFHHLCYWELMW 373


>sp|A1W465|SECA_ACISJ Protein translocase subunit secA OS=Acidovorax
           sp. (strain JS42) GN=secA PE=3 SV=1
          Length = 917

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +3

Query: 39  AGGDGEAMGRFASFLWVVKG------DVEEAESAYKAAVTVDPTNAY 161
           AG D + MGR  +FL +  G        EE ++AY+A +T    N Y
Sbjct: 136 AGRDAQWMGRLYNFLGLTVGINLPQMPREEKQAAYQADITYGTNNEY 182


>sp|Q6P730|DAB2P_RAT Disabled homolog 2-interacting protein
           OS=Rattus norvegicus GN=Dab2ip PE=1 SV=1
          Length = 996

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 280 HELGICSELEPKLSAIQQHEFSSA 209
           H LG+C+ LEP LSA  + E +SA
Sbjct: 162 HYLGLCAALEPILSAKTKEEMASA 185


>sp|Q3UHC7|DAB2P_MOUSE Disabled homolog 2-interacting protein OS=Mus
           musculus GN=Dab2ip PE=1 SV=1
          Length = 1189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 280 HELGICSELEPKLSAIQQHEFSSA 209
           H LG+C+ LEP LSA  + E +SA
Sbjct: 355 HYLGLCAALEPILSAKTKEEMASA 378


>sp|Q5VWQ8|DAB2P_HUMAN Disabled homolog 2-interacting protein
           OS=Homo sapiens GN=DAB2IP PE=1 SV=2
          Length = 1189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 280 HELGICSELEPKLSAIQQHEFSSA 209
           H LG+C+ LEP LSA  + E +SA
Sbjct: 355 HYLGLCAALEPILSAKTKEEMASA 378
tr_hit_id A9TDI7
Definition tr|A9TDI7|A9TDI7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 64
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915305|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_A03.
         (419 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TDI7|A9TDI7_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|A9T6F7|A9T6F7_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|Q5N7T3|Q5N7T3_ORYSJ Peroxidase-like protein (Os01g0855200 pro...    73   8e-12
tr|B8ACG3|B8ACG3_ORYSI Putative uncharacterized protein OS=Oryza...    73   8e-12
tr|B6U0L7|B6U0L7_MAIZE Putative uncharacterized protein OS=Zea m...    73   8e-12
tr|Q688J0|Q688J0_ORYSJ Os05g0447700 protein OS=Oryza sativa subs...    72   1e-11
tr|B6SSS3|B6SSS3_MAIZE Putative uncharacterized protein OS=Zea m...    72   1e-11
tr|A9U3W7|A9U3W7_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|A2Y583|A2Y583_ORYSI Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|A7NYI9|A7NYI9_VITVI Chromosome chr6 scaffold_3, whole genome ...    67   4e-10
tr|B7FM44|B7FM44_MEDTR Putative uncharacterized protein OS=Medic...    67   6e-10
tr|Q9LNU7|Q9LNU7_ARATH F22G5.38 OS=Arabidopsis thaliana PE=4 SV=1      64   4e-09
tr|Q8VZC8|Q8VZC8_ARATH At1g07280/F22G5_32 OS=Arabidopsis thalian...    64   4e-09
tr|A9S3E2|A9S3E2_PHYPA Predicted protein OS=Physcomitrella paten...    63   6e-09
tr|A7Q3D8|A7Q3D8_VITVI Chromosome chr13 scaffold_48, whole genom...    63   6e-09
tr|A5C7B4|A5C7B4_VITVI Putative uncharacterized protein OS=Vitis...    63   6e-09
tr|A9NPS5|A9NPS5_PICSI Putative uncharacterized protein OS=Picea...    63   8e-09
tr|Q8GW79|Q8GW79_ARATH Putative uncharacterized protein At2g2967...    62   2e-08
tr|O82388|O82388_ARATH Expressed protein (At2g29670/T27A16.23) (...    62   2e-08
tr|B8LR76|B8LR76_PICSI Putative uncharacterized protein OS=Picea...    60   5e-08
tr|Q9SD65|Q9SD65_ARATH Putative uncharacterized protein F13I12.1...    57   6e-07
tr|A0LCU9|A0LCU9_MAGSM Tetratricopeptide domain protein OS=Magne...    56   1e-06
tr|A9NT82|A9NT82_PICSI Putative uncharacterized protein OS=Picea...    55   2e-06
tr|Q8LNF3|Q8LNF3_ORYSJ Putative peroxidase OS=Oryza sativa subsp...    52   1e-05
tr|Q337F8|Q337F8_ORYSJ Os10g0501900 protein OS=Oryza sativa subs...    52   1e-05
tr|A2Z924|A2Z924_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|Q10RZ6|Q10RZ6_ORYSJ Os03g0140700 protein OS=Oryza sativa subs...    52   1e-05
tr|Q8LBE3|Q8LBE3_ARATH Putative uncharacterized protein OS=Arabi...    51   2e-05
tr|Q0WUZ1|Q0WUZ1_ARATH Putative uncharacterized protein At4g1794...    51   2e-05
tr|O49693|O49693_ARATH Putative uncharacterized protein AT4g1794...    51   2e-05

>tr|A9TDI7|A9TDI7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169439 PE=4 SV=1
          Length = 604

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 35/64 (54%), Positives = 48/64 (75%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE+ + RA+  D   DGE +GRFA+FLW+ +GD E AE A++AA  +DPTN YHAG Y+H
Sbjct: 525 AEEYFHRAICADPS-DGEVLGRFATFLWLARGDKETAERAFRAAAALDPTNPYHAGNYSH 583

Query: 183 FMWN 194
           F+W+
Sbjct: 584 FLWH 587


>tr|A9T6F7|A9T6F7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168339 PE=4 SV=1
          Length = 604

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 49/67 (73%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE+ + RA+  D   DGE +GRFA+FLW+ +GD E AE A++AA  +DP N YHAG Y+H
Sbjct: 528 AEEYFHRAIRADPS-DGEVLGRFANFLWLARGDKETAERAFRAAAALDPANPYHAGNYSH 586

Query: 183 FMWNSSA 203
           F+W+S +
Sbjct: 587 FLWHSES 593


>tr|Q5N7T3|Q5N7T3_ORYSJ Peroxidase-like protein (Os01g0855200
           protein) OS=Oryza sativa subsp. japonica GN=B1096A10.34
           PE=4 SV=1
          Length = 512

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 30/65 (46%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE  ++RAV  +   D EAMGR+A+FLW  + D+  AE  Y+ A+  +P+N++HA  YAH
Sbjct: 439 AEHYFKRAVRAEPA-DAEAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAH 497

Query: 183 FMWNS 197
           F+WN+
Sbjct: 498 FLWNT 502



 Score = 43.1 bits (100), Expect = 0.007
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = +3

Query: 6   EQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAHF 185
           E+ Y RAV  +   +   +  FA FL+ V+ D + AE  +K AV  +P +A   G YA F
Sbjct: 405 EERYERAVS-EEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATF 463

Query: 186 MWNS 197
           +W +
Sbjct: 464 LWKA 467


>tr|B8ACG3|B8ACG3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04480 PE=4 SV=1
          Length = 759

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 30/65 (46%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE  ++RAV  +   D EAMGR+A+FLW  + D+  AE  Y+ A+  +P+N++HA  YAH
Sbjct: 686 AEHYFKRAVRAEPA-DAEAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAH 744

Query: 183 FMWNS 197
           F+WN+
Sbjct: 745 FLWNT 749



 Score = 43.1 bits (100), Expect = 0.007
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = +3

Query: 6   EQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAHF 185
           E+ Y RAV  +   +   +  FA FL+ V+ D + AE  +K AV  +P +A   G YA F
Sbjct: 652 EERYERAVS-EEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATF 710

Query: 186 MWNS 197
           +W +
Sbjct: 711 LWKA 714


>tr|B6U0L7|B6U0L7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 499

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 32/67 (47%), Positives = 44/67 (65%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE  + RAV  +   D EA+ R+A+FLW  + D+  AE AY+ A+  DP NA+HA  YAH
Sbjct: 421 AEHYFERAVRAEPA-DSEALSRYATFLWKARNDLAGAEDAYQEAIAADPGNAHHAAAYAH 479

Query: 183 FMWNSSA 203
           F+WN+ A
Sbjct: 480 FLWNTGA 486


>tr|Q688J0|Q688J0_ORYSJ Os05g0447700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0012G21.7 PE=2 SV=1
          Length = 484

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 33/75 (44%), Positives = 47/75 (62%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AEQ + RAV  +   D EA+ R+A+FLW  + D+  AE  Y+ A+  DP NA+HA  YAH
Sbjct: 411 AEQYFERAVRAEPA-DAEALSRYATFLWKARNDLAAAEDTYQEAIAADPGNAHHAAAYAH 469

Query: 183 FMWNSSAGQAEENSC 227
           F+WN+      E++C
Sbjct: 470 FLWNTGG----EDTC 480


>tr|B6SSS3|B6SSS3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 512

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE  ++RA   +   D EA+GR+A+FLW  + D+  AE  Y+ A+  DP NA+HA  YAH
Sbjct: 439 AEHFFKRAARAEPA-DAEALGRYAAFLWQARDDLAAAEETYQEAIAADPGNAHHAAAYAH 497

Query: 183 FMWNSSAGQAEENSC 227
           F+WN+      E++C
Sbjct: 498 FLWNTGG----EDTC 508


>tr|A9U3W7|A9U3W7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155751 PE=4 SV=1
          Length = 331

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 34/72 (47%), Positives = 47/72 (65%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE+ + RAV+ D   D   + RFASFLW+ +G+   AE AYKAA+  DP ++Y AG YAH
Sbjct: 257 AEEYFHRAVLADPL-DSTILARFASFLWLGRGNRSAAERAYKAAIAADPQSSYPAGSYAH 315

Query: 183 FMWNSSAGQAEE 218
           F+W++  G   E
Sbjct: 316 FLWHAGDGDNSE 327


>tr|A2Y583|A2Y583_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20153 PE=4 SV=1
          Length = 484

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/75 (42%), Positives = 46/75 (61%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AEQ + RAV  +   D E + R+A+FLW  + D+  AE  Y+ A+  DP NA+HA  YAH
Sbjct: 411 AEQYFERAVRAEPA-DAEVLSRYATFLWKARNDLAAAEDTYQEAIAADPGNAHHAAAYAH 469

Query: 183 FMWNSSAGQAEENSC 227
           F+WN+      E++C
Sbjct: 470 FLWNTGG----EDTC 480


>tr|A7NYI9|A7NYI9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024138001
           PE=4 SV=1
          Length = 453

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 29/65 (44%), Positives = 44/65 (67%)
 Frame = +3

Query: 3   AEQLYRRAVMLDAGGDGEAMGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAH 182
           AE+ ++RA+ ++   D EA  ++ASFLWV K D+  AE  Y  A+  DP+N Y+A  YAH
Sbjct: 372 AEEYFKRAIAVEPP-DAEAYNKYASFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAH 430

Query: 183 FMWNS 197
           F+W++
Sbjct: 431 FLWST 435



 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 60  MGRFASFLWVVKGDVEEAESAYKAAVTVDPTNAYHAGCYAHFMW 191
           +  +A FL++V  D + AE  +K A+ V+P +A     YA F+W
Sbjct: 355 LANYAQFLYLVAHDYDRAEEYFKRAIAVEPPDAEAYNKYASFLW 398