BP915314 [AcEST]

BP915314
Clone id	YMU001_000070_B01
Library	YMU01
Length	530
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000070_B01.
Accession	BP915314
Tissue type	prothallium
Developmental stage	-
Contig ID	-
Sequence	GCTCATACTACAGTGCAAATACGAGGATGTACAGTCAAGCGACCTTTGGAAGTAGGGATT GTAGCAGTGAATATAGTGGTGGAACAAGCGAGCATGCAATGAATCCATCCACTTCCAGCA GCAGTGAATATTGACACATTTCAAGCAAGAGTATGGCAGCTTTTTACCAAGAGATGAAGA GTTTAACAGCTAGCACGTGCGACGGGTTTTAGCTCATAATTTTCGACAAATCTCGAGGGA TGCTTATCAATCCGGAAAACAGGACTGAAAATGCAAGACAAACATGTGTTTTGATAAACA GGTATATGAGCTTTGAGGGCAGATATATGCTAGCAGGGCTGGTTGTTTACTTGAAGGGCC AAGACACCCCCAAGTATTCCTCTTCTTTACAATGAGGCTTTCTGGAGGTTGCTCTAAACT TGGGACCCTTGCAACATAAATAAGCTTCTCTCAAGTGTATTATATGAAGACAATTGAACG CTGTTGTACATATATTTGAGATTGGATTGATTCTTTTTCCTTTCAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q3ZD69
Definition	sp\|Q3ZD69\|LMNA_PIG Lamin-A/C OS=Sus scrofa
Align length	26
Score (bit)	30.0
E-value	7.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915314\|Adiantum capillus-veneris mRNA, clone: YMU001_000070_B01. (530 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q3ZD69\|LMNA_PIG Lamin-A/C OS=Sus scrofa GN=LMNA PE=3 SV=1 30 7.2 sp\|P02545\|LMNA_HUMAN Lamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1 30 9.4 >sp\|Q3ZD69\|LMNA_PIG Lamin-A/C OS=Sus scrofa GN=LMNA PE=3 SV=1 Length = 664 Score = 30.0 bits (66), Expect = 7.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 441 IYVARVPSLEQPPESLIVKKRNTWGC 364 I+ A + PP L+ K +NTWGC Sbjct: 497 IWAAGAGATHSPPADLVWKSQNTWGC 522 >sp\|P02545\|LMNA_HUMAN Lamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1 Length = 664 Score = 29.6 bits (65), Expect = 9.4 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 441 IYVARVPSLEQPPESLIVKKRNTWGC 364 I+ A + PP L+ K +NTWGC Sbjct: 497 IWAAGAGATHSPPTDLVWKAQNTWGC 522
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A0BXL8
Definition	tr\|A0BXL8\|A0BXL8_PARTE Chromosome undetermined scaffold_134, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length	60
Score (bit)	33.5
E-value	6.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915314\|Adiantum capillus-veneris mRNA, clone: YMU001_000070_B01. (530 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A0BXL8\|A0BXL8_PARTE Chromosome undetermined scaffold_134, who... 33 6.9 >tr\|A0BXL8\|A0BXL8_PARTE Chromosome undetermined scaffold_134, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00033138001 PE=4 SV=1 Length = 1473 Score = 33.5 bits (75), Expect = 6.9 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 11/60 (18%) Frame = -3 Query: 156 PYSCLKCVNIHCCWKWMDSLHARLFHHYIHC-----YNPYFQRSLDC------TSSYLHC 10 PY CL+C + C KW +S+ A+ FH I C YN Q+ L C +S +HC Sbjct: 610 PY-CLECSSEKVCTKWDNSVDAK-FHSVIGCQPKTYYNKQEQKCLPCPNRCKTCTSEMHC 667