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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915322
Clone id YMU001_000070_B09
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTCCAAAGCACATCCTATCCAACATGACACTCTCCATCACTATCACCTAGAGACAAGC
TGACCTTCACCTGCCAAAGGTTATTTAACCTTGGCCGTCCACATGGATAATCCACGACAA
AGTACCCCTAAGCCCACTCCATACTAGGGCCTTTTTTCCAGCACTCTAAGACTTAACCAG
CATTGGGCAGCTTGAGAGCAGTCGTAAGAAGGAAAGGATGATGATGAAACTAAACTGCGC
AAGCGCCTAGGGGATTGAAATTGACATTTAACGGGGACATTGCCAACATTAAATGGTGGA
GCCAACGGTTTGTGGTCGCATCACTCGCGTATAGCAACAAGACGTAGGGATTTGGGAATT
GCTCAGATTATGAGAAAGACCTAAAACCAAACAAATATATTACTACCCAAGCTCAGACAT
GTGTCAAAAGCATAAAATTGGACAACTTTCACCCATAGTCCTTCGGCATGCCAAATAGCG
CTTGCGTTAAAAAAGGCTAATTTTCCAGCAGCACAAAGATACTTGAGCAAGGAGTCAAGG
TAGGCTGCTA
■■Homology search results ■■ -
sp_hit_id Q5G266
Definition sp|Q5G266|NETR_TRAPH Neurotrypsin OS=Trachypithecus phayrei
Align length 41
Score (bit) 30.4
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915322|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_B09.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5G266|NETR_TRAPH Neurotrypsin OS=Trachypithecus phayrei GN=P...    30   6.0  

>sp|Q5G266|NETR_TRAPH Neurotrypsin OS=Trachypithecus phayrei
           GN=PRSS12 PE=3 SV=1
          Length = 875

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 19  IQHDTLHHYHLETS*PSPAKGYLTLAVHMDNPRQSTPKPTP 141
           + +D+LHH H  +  P P   Y  L  H   PR   P P P
Sbjct: 24  VLNDSLHHRHRHSPPPGPQYPYY-LPTHQRPPRTRPPPPLP 63
tr_hit_id A8XLZ1
Definition tr|A8XLZ1|A8XLZ1_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 44
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915322|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_B09.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8XLZ1|A8XLZ1_CAEBR Putative uncharacterized protein OS=Caeno...    35   3.4  

>tr|A8XLZ1|A8XLZ1_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG15336 PE=4 SV=2
          Length = 1325

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 7   KAHPIQHDTLHHYHLET-S*PSPAKGYLTLAVHMDNPRQSTPKP 135
           KAHP  H T+HH+H++T S   P     T  +   NP  +TPKP
Sbjct: 41  KAHPKAHPTVHHHHVKTHSNQGPQNDNPTGHI---NPNPNTPKP 81