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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915325
Clone id YMU001_000070_C01
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGAGGCGCTTGTGCCATCACTCAAGACTTTCAATCCAGCAGTTGTTCTAGCTGTCATG
GAAGAATTGATCTGCCGGCGGGGTTTGATCTCAGCAGTATCTAATCTTGATACTACATCG
CTGGAGCTCCTCTTAGACTTTTTGAGAAGGTAAAATTATACTCTTGGAAATAGCCTGGAG
AGAAGAGGGGGTAAGGAGTACGCACTGGCAGCATACAATGTGGGCAGTTCAGTTGCTTCT
TGAAATTGTATTTCTTGATCATTGAAGTCTATGTTTCATATCTTTTGATATGTATTTAAG
CTTCTGGAAGTCTTACTTGGCGGAAACAAATTACTGTCAGTTGTTCTCTTGCGATGGATT
TTATGGTTTGAGAAAGAGTTGGGAGGGGCAAATTTTGTATGTGATTTGGGTTTGGGTTGC
TCAAAAATAAATTTGACAACTTGTATGCAGAAATGTGACGCTCCCCCAATATTCAAGGAT
ATTAATTCCTTTTGCTCATAAGGTGCTTGACAAATGTGCTGGCGATTTTTGTCTTTCTCC
ATCAATTCTACATCAGGTATCGAGCCATACATT
■■Homology search results ■■ -
sp_hit_id Q5F3D7
Definition sp|Q5F3D7|UTP15_CHICK U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus
Align length 47
Score (bit) 35.8
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915325|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C01.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5F3D7|UTP15_CHICK U3 small nucleolar RNA-associated protein ...    36   0.16 
sp|A7GDF4|SEPF_CLOBL Cell division protein sepF OS=Clostridium b...    33   1.3  
sp|A5I1U5|SEPF_CLOBH Cell division protein sepF OS=Clostridium b...    33   1.3  
sp|Q8CPC5|SBCC_STAES Nuclease sbcCD subunit C OS=Staphylococcus ...    31   3.8  
sp|Q5HPJ3|SBCC_STAEQ Nuclease sbcCD subunit C OS=Staphylococcus ...    31   3.8  
sp|A8WVX8|EIF3I_CAEBR Eukaryotic translation initiation factor 3...    30   6.5  
sp|Q9W3C7|PPT1_DROME Palmitoyl-protein thioesterase 1 OS=Drosoph...    30   8.5  
sp|Q965S8|EIF3I_CAEEL Eukaryotic translation initiation factor 3...    30   8.5  

>sp|Q5F3D7|UTP15_CHICK U3 small nucleolar RNA-associated protein 15
           homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1
          Length = 520

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 10  LVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           L P ++ + P V +AVM+EL  R  L SA++  D   + LLL F+ R
Sbjct: 381 LEPHIRLYTPEVTVAVMQELNRRGTLRSALAGRDEKQISLLLTFVTR 427


>sp|A7GDF4|SEPF_CLOBL Cell division protein sepF OS=Clostridium
           botulinum (strain Langeland / NCTC 10281 / Type F)
           GN=sepF PE=3 SV=1
          Length = 150

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +1

Query: 7   ALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTLGNSLERR 186
           A V  +K  +    + + +EL  R+ +I   ++L+T   + LLDF+   +Y LG SLE  
Sbjct: 58  AKVKIIKPCSYEEAVDICDELKNRKIIIVNTTDLETKIAQRLLDFMGGASYALGGSLEEV 117

Query: 187 GGKEYALAAYNV 222
               Y LA   V
Sbjct: 118 EKSVYILAPSTV 129


>sp|A5I1U5|SEPF_CLOBH Cell division protein sepF OS=Clostridium
           botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
           A) GN=sepF PE=3 SV=1
          Length = 150

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +1

Query: 7   ALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTLGNSLERR 186
           A V  +K  +    + + +EL  R+ +I   ++L+T   + LLDF+   +Y LG SLE  
Sbjct: 58  AKVKIIKPCSYEEAVDICDELKNRKIIIVNTTDLETKIAQRLLDFMGGASYALGGSLEEV 117

Query: 187 GGKEYALAAYNV 222
               Y LA   V
Sbjct: 118 EKSVYILAPSTV 129


>sp|Q8CPC5|SBCC_STAES Nuclease sbcCD subunit C OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=sbcC PE=3 SV=1
          Length = 1009

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 401 HTKFAPPNSFSNHKIHRKRTTDSNLFPPSKTSRSLNTYQKI*NIDFNDQEIQFQEATE 228
           H++F+  N F  +  H K+  ++  +   KT   LN       I+ NDQ+   +  T+
Sbjct: 650 HSQFSSVNDFETYYSHAKKQVETYEYENEKTKDKLNELNNKLKIEMNDQKHLTENLTQ 707


>sp|Q5HPJ3|SBCC_STAEQ Nuclease sbcCD subunit C OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=sbcC PE=3
           SV=1
          Length = 1009

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 401 HTKFAPPNSFSNHKIHRKRTTDSNLFPPSKTSRSLNTYQKI*NIDFNDQEIQFQEATE 228
           H++F+  N F  +  H K+  ++  +   KT   LN       I+ NDQ+   +  T+
Sbjct: 650 HSQFSSVNDFETYYSHAKKQVETYEYENEKTKDKLNELNNKLKIEMNDQKHLTENLTQ 707


>sp|A8WVX8|EIF3I_CAEBR Eukaryotic translation initiation factor 3
           subunit I OS=Caenorhabditis briggsae GN=eif-3.I PE=3
           SV=1
          Length = 327

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 527 NRQHICQAPYEQKELISLNIGGASHFCIQVVKFIFEQPKPKSHTKFAPPNSFSNH 363
           NR HIC    E    ++     A HF  ++   +FE+   +    F P N+ + H
Sbjct: 242 NRDHICLGGGEDAMQVTQTAVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWH 296


>sp|Q9W3C7|PPT1_DROME Palmitoyl-protein thioesterase 1 OS=Drosophila
           melanogaster GN=Ppt1 PE=1 SV=2
          Length = 314

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 210 SIQCGQFSCFLKLYFLIIEVYVSYL 284
           SI C +FSC L L FLI  + +SY+
Sbjct: 3   SICCSRFSCILFLLFLIFSLVLSYI 27


>sp|Q965S8|EIF3I_CAEEL Eukaryotic translation initiation factor 3
           subunit I OS=Caenorhabditis elegans GN=eif-3.I PE=2 SV=2
          Length = 327

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 527 NRQHICQAPYEQKELISLNIGGASHFCIQVVKFIFEQPKPKSHTKFAPPNSFSNH 363
           NR HIC    E    ++     A HF  ++   +FE+   +    F P N+ + H
Sbjct: 242 NRDHICLGGGEDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWH 296
tr_hit_id B6TSA2
Definition tr|B6TSA2|B6TSA2_MAIZE Small nucleolar ribonucleoprotein complex subunit OS=Zea mays
Align length 55
Score (bit) 53.1
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915325|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C01.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TSA2|B6TSA2_MAIZE Small nucleolar ribonucleoprotein complex...    53   1e-05
tr|Q8LH68|Q8LH68_ORYSJ Os07g0224900 protein OS=Oryza sativa subs...    52   2e-05
tr|A7PU09|A7PU09_VITVI Chromosome chr7 scaffold_31, whole genome...    52   2e-05
tr|A5BEN6|A5BEN6_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|A3BHX3|A3BHX3_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|A2YJJ8|A2YJJ8_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q8GXN5|Q8GXN5_ARATH Putative uncharacterized protein At2g4799...    50   9e-05
tr|O82266|O82266_ARATH Putative uncharacterized protein At2g4799...    50   9e-05
tr|B7FT74|B7FT74_PHATR Predicted protein OS=Phaeodactylum tricor...    45   0.002
tr|B8C5B0|B8C5B0_THAPS WD40-repeat protein OS=Thalassiosira pseu...    42   0.024
tr|A5ZD18|A5ZD18_9BACE Putative uncharacterized protein OS=Bacte...    35   3.0  
tr|A0DIJ7|A0DIJ7_PARTE Chromosome undetermined scaffold_52, whol...    35   3.8  
tr|A0D2G1|A0D2G1_PARTE Chromosome undetermined scaffold_35, whol...    35   3.9  
tr|B6PIH1|B6PIH1_BRAFL Putative uncharacterized protein OS=Branc...    34   6.5  
tr|B5QIC4|B5QIC4_CAMJE Putative membrane protein OS=Campylobacte...    34   6.6  
tr|A0D438|A0D438_PARTE Chromosome undetermined scaffold_37, whol...    34   6.6  
tr|B6MRB9|B6MRB9_BRAFL Putative uncharacterized protein OS=Branc...    33   8.6  

>tr|B6TSA2|B6TSA2_MAIZE Small nucleolar ribonucleoprotein complex
           subunit OS=Zea mays PE=2 SV=1
          Length = 537

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 31/55 (56%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTL 165
           K+ALV +L   NP  V+AVMEEL+ RR LI  + NLD   L LLL+FL R N TL
Sbjct: 419 KDALVSALVKNNPRSVVAVMEELVSRRKLIRCIGNLDNEELGLLLEFLHR-NATL 472


>tr|Q8LH68|Q8LH68_ORYSJ Os07g0224900 protein OS=Oryza sativa subsp.
           japonica GN=P0668C05.122 PE=2 SV=1
          Length = 533

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTL 165
           K+ALV +L   NP  ++AVMEEL+ RR L+  + NLDT  L LLL FL R N TL
Sbjct: 415 KDALVSALARNNPRSIVAVMEELVSRRKLVRCIENLDTEELVLLLLFLHR-NATL 468


>tr|A7PU09|A7PU09_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023613001
           PE=4 SV=1
          Length = 542

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           K+A V +L   NP  V+AVMEEL+ R+ L+  VSNLDT  L LLL FL R
Sbjct: 423 KDAFVSALSGKNPENVVAVMEELVARKKLLKCVSNLDTEELGLLLAFLHR 472


>tr|A5BEN6|A5BEN6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016665 PE=4 SV=1
          Length = 570

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 28/50 (56%), Positives = 34/50 (68%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           K+A V +L   NP  V+AVMEEL+ R+ L+  VSNLDT  L LLL FL R
Sbjct: 409 KDAFVSALSGKNPENVVAVMEELVARKKLLKCVSNLDTEELGLLLAFLHR 458


>tr|A3BHX3|A3BHX3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022645 PE=4 SV=1
          Length = 518

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTL 165
           K+ALV +L   NP  ++AVMEEL+ RR L+  + NLDT  L LLL FL R N TL
Sbjct: 400 KDALVSALARNNPRSIVAVMEELVSRRKLVRCIENLDTEELVLLLLFLHR-NATL 453


>tr|A2YJJ8|A2YJJ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25407 PE=4 SV=1
          Length = 533

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR*NYTL 165
           K+ALV +L   NP  ++AVMEEL+ RR L+  + NLDT  L LLL FL R N TL
Sbjct: 415 KDALVSALARNNPRSIVAVMEELVSRRKLVRCIENLDTEELVLLLLFLHR-NATL 468


>tr|Q8GXN5|Q8GXN5_ARATH Putative uncharacterized protein At2g47990
           OS=Arabidopsis thaliana GN=At2g47990 PE=2 SV=1
          Length = 530

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           KEALV  L+   PA V+AVMEEL+ RR L+  VSN++   L +LL FL+R
Sbjct: 411 KEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGELGMLLGFLQR 460


>tr|O82266|O82266_ARATH Putative uncharacterized protein At2g47990
           OS=Arabidopsis thaliana GN=At2g47990 PE=4 SV=1
          Length = 530

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +1

Query: 1   KEALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           KEALV  L+   PA V+AVMEEL+ RR L+  VSN++   L +LL FL+R
Sbjct: 411 KEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGELGMLLGFLQR 460


>tr|B7FT74|B7FT74_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_43713 PE=4 SV=1
          Length = 609

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = +1

Query: 4   EALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           +AL  +LKT  P VV+AV+EEL  RRGL  A+SN D  SLE LL F  R
Sbjct: 488 DALDEALKTRIPQVVVAVLEELGKRRGLTIALSNRDEESLEPLLSFTVR 536


>tr|B8C5B0|B8C5B0_THAPS WD40-repeat protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_269030 PE=4 SV=1
          Length = 662

 Score = 42.0 bits (97), Expect = 0.024
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +1

Query: 4   EALVPSLKTFNPAVVLAVMEELICRRGLISAVSNLDTTSLELLLDFLRR 150
           +AL   L++  P VV+AV+EEL  RRGL  A+SN D  SLE +L F  R
Sbjct: 539 DALDKVLESRQPQVVIAVIEELGKRRGLTIALSNRDEESLESILSFTIR 587