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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915328
Clone id YMU001_000070_C04
Library
Length 423
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGGTAAATAATCTTGCACATTGTTGGCCTCAAATCCTAGGC
CCCCAAGTGCAAATCACATTGTGTACTAAAGTACTTGATGTTTAATTATTTGTGTTAGAA
CGAAGGCCCATCTTTTTTAAGTAGTTATTTGTGTGCAGACAAGGGCATAACAATGTGCAC
GTAGATTGATTCTCAAGTTCCTCATTGAAATCATAACAAGCTACAACAAATTCAAGAGAA
TTGTAGCAAAGTTCCTTTTTTTCAAGAAAATCATGAATTTTCTTAACTATAGCAAATTTC
CTTCTTTTTGAGAAAATCACGAATTTTCTTAACTATAATTCAGTTAAGAAGCTCAATCTT
CCACAAATGGCCATGTCACATTGTTAGAAGGTAGCATTGATTAACAGGCACGACATCAAA
GTC
■■Homology search results ■■ -
sp_hit_id Q6TND0
Definition sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii
Align length 28
Score (bit) 30.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915328|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C04.
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii GN=matK PE=3 SV=1    31   2.3  
sp|Q6TND4|MATK_DALPU Maturase K OS=Dalea purpurea GN=matK PE=3 SV=1    31   2.3  
sp|P15804|CAPP3_SORBI Phosphoenolpyruvate carboxylase 3 OS=Sorgh...    30   3.9  
sp|P31916|MAT2_EUGGR Maturase-like protein 2 OS=Euglena gracilis...    29   8.6  
sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1 OS=...    29   8.6  

>sp|Q6TND0|MATK_DALWR Maturase K OS=Dalea wrightii GN=matK PE=3 SV=1
          Length = 512

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 207 EIITSYNKFKRIVAKFLFFKKIMNFLNY 290
           E+I SYNK + I A F FF+    +LNY
Sbjct: 122 EVIKSYNKLRSIHAIFPFFEDKFTYLNY 149


>sp|Q6TND4|MATK_DALPU Maturase K OS=Dalea purpurea GN=matK PE=3 SV=1
          Length = 509

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 207 EIITSYNKFKRIVAKFLFFKKIMNFLNY 290
           E+I SYNK + I A F FF+    +LNY
Sbjct: 119 EVIKSYNKLRSIHAIFPFFEDKFTYLNY 146


>sp|P15804|CAPP3_SORBI Phosphoenolpyruvate carboxylase 3 OS=Sorghum
           bicolor PE=1 SV=2
          Length = 960

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 314 FSKRRKFAIVKKIHDFLEKKELCYNSL 234
           FS+  + A+  KI +FLE  ELCY SL
Sbjct: 388 FSEISEDAVFTKIEEFLEPLELCYKSL 414


>sp|P31916|MAT2_EUGGR Maturase-like protein 2 OS=Euglena gracilis
           GN=mat2 PE=4 SV=3
          Length = 758

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 180 RRLILKFLIEIITSYNKFKRIVAKFLFFKKIMNFLNYSKFPSF*ENHEFS 329
           ++  L    +IIT +N F + +     + +  NF   + +P+F +   FS
Sbjct: 424 KKYFLNVFQKIITKHNTFLKALKNIFHYSRCFNFFKKNCYPNFYKKKNFS 473


>sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1
            OS=Macaca fascicularis GN=KCNU1 PE=2 SV=1
          Length = 1149

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 308  KRRKFAIVKKIHDF-LEKKELCYNSLEFVVACYDFNEELENQSTCTLL 168
            + ++F I +  ++F L   +L + ++ F  ACY  NEE  +Q +  ++
Sbjct: 1012 ENKRFVITRPANEFKLLPSDLVFCAIPFSTACYKRNEEFSSQKSYEII 1059
tr_hit_id Q7YYI3
Definition tr|Q7YYI3|Q7YYI3_CRYPV Putative uncharacterized protein OS=Cryptosporidium parvum
Align length 38
Score (bit) 33.1
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915328|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C04.
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7YYI3|Q7YYI3_CRYPV Putative uncharacterized protein OS=Crypt...    33   7.0  
tr|Q5CX84|Q5CX84_CRYPV Putative uncharacterized protein OS=Crypt...    33   7.0  

>tr|Q7YYI3|Q7YYI3_CRYPV Putative uncharacterized protein
            OS=Cryptosporidium parvum GN=1MB.209 PE=4 SV=1
          Length = 1412

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = -2

Query: 299  KFAIVKKIHDFLEKKELCYNSLEFVVACYDFNEELENQ 186
            KFA+  +I+  LEKK++   SLE+ +  YD +++LE++
Sbjct: 1197 KFAVKNRINFSLEKKQIILISLEYRIWKYDIHKQLESK 1234


>tr|Q5CX84|Q5CX84_CRYPV Putative uncharacterized protein
            OS=Cryptosporidium parvum Iowa II GN=cgd6_2100 PE=4 SV=1
          Length = 1645

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = -2

Query: 299  KFAIVKKIHDFLEKKELCYNSLEFVVACYDFNEELENQ 186
            KFA+  +I+  LEKK++   SLE+ +  YD +++LE++
Sbjct: 1304 KFAVKNRINFSLEKKQIILISLEYRIWKYDIHKQLESK 1341