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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915330
Clone id YMU001_000070_C06
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTAGAAGAATTTGCGGCCGCGAATTTGTGTTTTTTGCCAGAACTTCACACTCCTATTG
ACACAAGCTGCGAGTACAAAATGAGGCAAACCTTTCACACATGAATGCCTCGAAAATAAA
TACACTAATTGGACCAAGATTGAGGGGACTCTATTTTCATATTACTAATGTGCCCCACTG
TCAAAGGAAACATTTTTCCCCCTAATATACAGAACACCCACTTTCCTATAAGATGGTAGT
GGTGACTCTTTTGTGAAATAGCACACCCACTTTCACTTCCCTAAGAAAAACAGGCAGCTT
CAATACAAGAGGATGAAGAGTTGTAGTCATCCTGTGCTGGTGGAAGCCTTGTGATTATCC
TCATCCTCAACAAGACCGTCAGGCTCACATGGGTCTGTCGAGTCCTCGTAGGAAGCTTTC
AGTAATGGCTCAATGTCTTTGGCCACTGAGGCATTGCCCCTGATTCTCTCCTCCT
■■Homology search results ■■ -
sp_hit_id Q8C263
Definition sp|Q8C263|CM003_MOUSE Uncharacterized protein C13orf3 homolog OS=Mus musculus
Align length 47
Score (bit) 30.0
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915330|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C06.
         (449 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C263|CM003_MOUSE Uncharacterized protein C13orf3 homolog OS...    30   4.7  
sp|A3FIN4|AT8B5_MOUSE Probable phospholipid-transporting ATPase ...    30   4.7  
sp|Q28085|CFAH_BOVIN Complement factor H OS=Bos taurus GN=CFH PE...    30   6.1  
sp|Q3AMN3|RL2_SYNSC 50S ribosomal protein L2 OS=Synechococcus sp...    29   8.0  
sp|Q3AUW0|RL2_SYNS9 50S ribosomal protein L2 OS=Synechococcus sp...    29   8.0  
sp|A5GVW3|RL2_SYNR3 50S ribosomal protein L2 OS=Synechococcus sp...    29   8.0  
sp|Q7U4J7|RL2_SYNPX 50S ribosomal protein L2 OS=Synechococcus sp...    29   8.0  
sp|Q7V539|RL2_PROMM 50S ribosomal protein L2 OS=Prochlorococcus ...    29   8.0  
sp|A2CC30|RL2_PROM3 50S ribosomal protein L2 OS=Prochlorococcus ...    29   8.0  

>sp|Q8C263|CM003_MOUSE Uncharacterized protein C13orf3 homolog
           OS=Mus musculus PE=1 SV=1
          Length = 411

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 423 SVAKDIEPLLKASYEDSTDPCEPDGLVEDEDNHKASTSTG*LQLFIL 283
           +V KDI+   KA  ++ +DPC P G V +E       S   LQ +I+
Sbjct: 124 AVCKDIQ---KAGVKELSDPCVPSGSVSEEPLRSPQLSDFGLQRYII 167


>sp|A3FIN4|AT8B5_MOUSE Probable phospholipid-transporting ATPase
           FetA OS=Mus musculus GN=Feta PE=2 SV=1
          Length = 1183

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 245 SGCAISQKSHHYHLIGK---WVFCILGGKMFPLTVGH 144
           SG +  +++H  HL+     W+F  LGG  F L++GH
Sbjct: 283 SGRSTFKRTHIDHLMNVLVVWIFMFLGGMCFLLSIGH 319


>sp|Q28085|CFAH_BOVIN Complement factor H OS=Bos taurus GN=CFH PE=1
           SV=3
          Length = 1236

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 246 FTSLRKTGSFNTRG*RVVVILCWWKPCDYP 335
           F  +R T +  TR   V V  C WKPC YP
Sbjct: 299 FPEIRGTDATCTRDGWVPVPRCAWKPCSYP 328


>sp|Q3AMN3|RL2_SYNSC 50S ribosomal protein L2 OS=Synechococcus sp.
           (strain CC9605) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEMRNTSLGKAGRRRWLGRRPQVRGSVMNPCDHPHGGGEGRAPIGRSGP 246


>sp|Q3AUW0|RL2_SYNS9 50S ribosomal protein L2 OS=Synechococcus sp.
           (strain CC9902) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEVRNTSLGKAGRRRWLGRRPQVRGSVMNPCDHPHGGGEGRAPIGRSGP 246


>sp|A5GVW3|RL2_SYNR3 50S ribosomal protein L2 OS=Synechococcus sp.
           (strain RCC307) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEVRNTSLGKAGRKRWLGRRPEVRGSVMNPCDHPHGGGEGRAPIGRSGP 246


>sp|Q7U4J7|RL2_SYNPX 50S ribosomal protein L2 OS=Synechococcus sp.
           (strain WH8102) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEVRNTSLGKAGRRRWLGRRPQVRGSVMNPCDHPHGGGEGRAPIGRSGP 246


>sp|Q7V539|RL2_PROMM 50S ribosomal protein L2 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEVRNTSLGKAGRRRWLGRRPQVRGSVMNPCDHPHGGGEGRAPIGRSGP 246


>sp|A2CC30|RL2_PROM3 50S ribosomal protein L2 OS=Prochlorococcus
           marinus (strain MIT 9303) GN=rplB PE=3 SV=1
          Length = 287

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 NSTPTFTSLRKTGSFNTRG*RVVVILCWWKPCDYPHPQQDRQAHMGLSSP 380
           NS    TSL K G     G R  V      PCD+PH   + +A +G S P
Sbjct: 197 NSEVRNTSLGKAGRRRWLGRRPQVRGSVMNPCDHPHGGGEGRAPIGRSGP 246
tr_hit_id B6ICT1
Definition tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein OS=Escherichia coli (strain SE11)
Align length 27
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915330|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C06.
         (449 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein OS=Esche...    36   1.1  
tr|B3L3I7|B3L3I7_PLAKH KIR protein OS=Plasmodium knowlesi (strai...    33   9.4  

>tr|B6ICT1|B6ICT1_ECOSE Putative uncharacterized protein
           OS=Escherichia coli (strain SE11) GN=ECSE_P4-0010 PE=4
           SV=1
          Length = 138

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 300 VILCWWKPCDYPHPQQDRQA-HMGLSS 377
           +I+ WWKP D+PHP Q+  A  MG+SS
Sbjct: 55  LIIHWWKPYDWPHPSQESIAVRMGVSS 81


>tr|B3L3I7|B3L3I7_PLAKH KIR protein OS=Plasmodium knowlesi (strain
           H) GN=PKH_080430 PE=4 SV=1
          Length = 622

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
 Frame = -1

Query: 332 IITRLPPAQDDYNSSSSCIEAA----CFS*GSESGCAISQKSHHYHLIGKWVFCILGGKM 165
           ++ +L P   DYN  + CIE A    CF          +     +HL   W    LG KM
Sbjct: 261 LMPQLQPEMKDYNCKNDCIEKALYAWCFINNETEAKDKAWYDDRFHLFYSW----LGQKM 316

Query: 164 FPLTVGHISNMKIESPQSWSN*CIYFRGIHV*KVCLILYSQLV 36
           F    GH SN K +     +      +G+H+ + C  ++  ++
Sbjct: 317 F----GH-SNSKDKISYPMNQVYNVLKGLHIGQDCKDMWEDVL 354