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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915332
Clone id YMU001_000070_C08
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCATTGCAATATGGATGAAAGATGAGTCGTTTGATTTTGAGTTTTTTCGCACTGGCATT
GGACTTTTCTGCCTACTAGCCTTGGCGGCAATTCGTTTGAACAACCGAACAGGAATAGAT
GCCTACCTTCTGGGTTTGGGAGCATCTGTTGGGGTGATGCTTTGGACAGGTGAACGGTGC
TTGGTGAAAAAAGAAGGCAGTCCAGCTGGAATAGTTTCATTCTTTGCTGCTGCAATGGCT
GCTCTGTTTTCTACTGCAATTCATGAGACAATACGTCGGCGCTTCTAGAATCATCGTGGC
TCGGTTAAGTGCAACATCTACGCTATCTTGACACTATAGCCTGCTGGAGTATTACTGGAT
TGTACAAAAGCTCTTAGTAGCAGCAGAATGCTGACACTGTTTTGTATTATAAGTTGTGTT
ATGTACATATGTCG
■■Homology search results ■■ -
sp_hit_id Q9V1H6
Definition sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi
Align length 34
Score (bit) 30.0
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915332|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C08.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=ar...    30   4.3  
sp|Q74D67|Y1452_GEOSL Uncharacterized RNA methyltransferase GSU1...    30   5.6  
sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1      30   5.6  
sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora...    30   5.6  
sp|O94274|YORQ_SCHPO Uncharacterized protein P8B7.26 OS=Schizosa...    29   9.6  
sp|Q6PB66|LPPRC_MOUSE Leucine-rich PPR motif-containing protein,...    29   9.6  

>sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=aroK
           PE=3 SV=1
          Length = 274

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 109 TGIDAYLLGLGASVGVMLWTGERCLVKKEGSPAG 210
           T ++A+  G GA++G+ LWT  R  V  +G   G
Sbjct: 12  TIVNAFATGKGAAIGIELWTEARVRVTGDGEVRG 45


>sp|Q74D67|Y1452_GEOSL Uncharacterized RNA methyltransferase GSU1452
           OS=Geobacter sulfurreducens GN=GSU1452 PE=3 SV=1
          Length = 495

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 171 TCPKHHP--NRCSQTQKVGIYSCSVVQTNCRQG 79
           TCP HHP  NR     K GI  C V   N R G
Sbjct: 174 TCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206


>sp|O88552|CLD2_MOUSE Claudin-2 OS=Mus musculus GN=Cldn2 PE=1 SV=1
          Length = 230

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 298 GSVKCNIYAILTL*PAGVLLDCTKALSSSRMLTLFCIISCVMYIC 432
           G  +C+IY+ L   PA +       ++SS M +L CIIS V   C
Sbjct: 60  GITQCDIYSTLLGLPADIQAAQAMMVTSSAMSSLACIISVVGMRC 104


>sp|Q872W1|ATG17_NEUCR Autophagy-related protein 17 OS=Neurospora
           crassa GN=atg-17 PE=3 SV=1
          Length = 568

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 200 LPSFFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKSP 60
           + SF +   SP  +++P DAP+PRR +   +      AA A   +SP
Sbjct: 1   MASFHSHSPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESP 47


>sp|O94274|YORQ_SCHPO Uncharacterized protein P8B7.26
           OS=Schizosaccharomyces pombe GN=SPBP8B7.26 PE=2 SV=2
          Length = 262

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 173 SPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKSPMPVRKNSKSN 30
           SPV+   P   PKPRR   +  R     +  +S    P PV++N++ N
Sbjct: 217 SPVKKPPPPAPPKPRR---LAARTSSNSSGVSSPTSVPPPVQRNTRPN 261


>sp|Q6PB66|LPPRC_MOUSE Leucine-rich PPR motif-containing protein,
           mitochondrial OS=Mus musculus GN=Lrpprc PE=1 SV=2
          Length = 1392

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 107 RLFKRIAAKASRQKSPMPVRKNSKSNDSSFIHI 9
           RL+  +A K   Q+ P PVRKNS   D + + +
Sbjct: 57  RLYAIVAEKRDLQEEPAPVRKNSSQFDWALMRL 89
tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 120.0
E-value 3.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915332|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_C08.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten...   120   3e-26
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten...   115   8e-25
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea...   113   5e-24
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten...    95   2e-18
tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b P...    34   4.2  
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS...    33   5.4  
tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein OS=Trich...    33   7.1  
tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71...    33   9.3  
tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family OS...    33   9.3  
tr|A7UW04|A7UW04_NEUCR Predicted protein OS=Neurospora crassa GN...    33   9.3  

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
          Length = 262

 Score =  120 bits (302), Expect = 3e-26
 Identities = 56/73 (76%), Positives = 63/73 (86%)
 Frame = +1

Query: 1   CIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGIDAYLLGLGASVGVMLWTGERC 180
           CIAIW+KDES DFEFFRTG+GLF       +RLN RTGIDAY+LGLGASVGVM+WTGERC
Sbjct: 172 CIAIWVKDESLDFEFFRTGLGLFGLLALAAVRLNARTGIDAYILGLGASVGVMVWTGERC 231

Query: 181 LVKKEGSPAGIVS 219
           LVK+EG PAGIV+
Sbjct: 232 LVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
          Length = 258

 Score =  115 bits (289), Expect = 8e-25
 Identities = 51/73 (69%), Positives = 62/73 (84%)
 Frame = +1

Query: 1   CIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGIDAYLLGLGASVGVMLWTGERC 180
           CIA+W+KD++ DFEF RTG+GLF        RLN RTGIDAY+LGLGAS+GVM+WTGERC
Sbjct: 168 CIAVWVKDDNLDFEFLRTGLGLFGLLAVSAFRLNTRTGIDAYILGLGASLGVMVWTGERC 227

Query: 181 LVKKEGSPAGIVS 219
           LVKKEG+PAG+V+
Sbjct: 228 LVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 264

 Score =  113 bits (282), Expect = 5e-24
 Identities = 50/73 (68%), Positives = 60/73 (82%)
 Frame = +1

Query: 1   CIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGIDAYLLGLGASVGVMLWTGERC 180
           CIA+W+KD++ D +F RTG GLFC      IRLNNRTGIDAY+LGLGASVGVM+W GERC
Sbjct: 174 CIAVWVKDDNMDNDFLRTGCGLFCLLVLAAIRLNNRTGIDAYILGLGASVGVMVWAGERC 233

Query: 181 LVKKEGSPAGIVS 219
            VK+E +PAGIV+
Sbjct: 234 FVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
          Length = 249

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 42/73 (57%), Positives = 57/73 (78%)
 Frame = +1

Query: 1   CIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNNRTGIDAYLLGLGASVGVMLWTGERC 180
           CIAIW+KD+  + EF RTG+GLF       +RLN  TG DA++LG+ +S+GVM+WTGERC
Sbjct: 159 CIAIWVKDDGLNLEFIRTGLGLFFLLAVSALRLNVETGKDAHVLGIVSSLGVMVWTGERC 218

Query: 181 LVKKEGSPAGIVS 219
           L+K+EGS AG+V+
Sbjct: 219 LIKREGSLAGVVA 231


>tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b PE=2
           SV=1
          Length = 673

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -1

Query: 224 KNETIPAGLPSFFTKHRSPVQSITPTDAPKPRR*ASIPVR----LFKRIAAKASRQKSPM 57
           K E  P+G P F+ K  +P QS  P+ +P P    S P+      F R A KA ++  P 
Sbjct: 443 KKEKSPSGSPHFYRKGTTPTQS--PSQSPGPTPPPSPPLTKKKPFFNRSAPKAIKENKP- 499

Query: 56  PVRKN 42
           P  +N
Sbjct: 500 PAAEN 504


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
          Length = 118

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 209 PAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 63
           P G P+ +TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 68  PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_217710 PE=4 SV=1
          Length = 244

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 210 NSFILCCCN---GCSVFYCNS*DN 272
           + FILCCC    GCS  YCN  DN
Sbjct: 213 SGFILCCCECCKGCSCSYCNKKDN 236


>tr|Q9DTD2|Q9DTD2_9VIRU Genes for ORF2, ORF1, isolate: s-TTV CH71
           OS=Torque teno virus PE=4 SV=1
          Length = 727

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 301 SHDDSRSADVLSHELQ*KT-EQPLQQQRMKLFQLDCLLFSPSTVHLSKASPQQML 140
           S ++ ++ +  + E + KT EQ L+QQR+  FQL CL +    V    A P Q L
Sbjct: 671 SQEEKKARESKAQEEEAKTLEQQLEQQRLLGFQLRCLAYQVLQVQKGHAIPPQAL 725


>tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei (strain 668)
           GN=BURPS668_3787 PE=4 SV=1
          Length = 132

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 212 IPAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 63
           +P G P+  TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 81  LPPGEPAAHTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 132


>tr|A7UW04|A7UW04_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU10687 PE=4 SV=1
          Length = 678

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 210 SSWTAFFFHQAP-FTCPKHHPNRCSQTQKVG 121
           S+   F +H AP FTCP++  N+C++ QK G
Sbjct: 13  SAAATFPWHNAPPFTCPQNTDNKCTEQQKTG 43