NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915337
Clone id YMU001_000070_D02
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGCTTCCGTGTAAAAAGCTTGTTGATGGATTATTGGTGTTGGTGGATGCTCCTTTTTGG
TCTGAGGGGAGCTATGTTTGGAATTTTTTGACTTTTAATACTATATCACTCACAATTGTG
AGTTCTAATTAAAAAAAATTTTAAAGAGGAGCAAAATGTAGAGGGTAAGAGCGACTCGAC
AAGGCATATGATAGGATTATGTGGTCATACATTGAAGAAGTCATGAAATGATTGGGCTTT
GGGCCTAGACTTTGTCGACTTATACAAACTCTGAGTGCAGGGAGTAAATCTGAGTTATTG
TTCAATGATAGAATTGTGGGCTCCTTTGAAGCCAGAAGATTGATCAAGCAAGGATGCCCC
TGGCCCCTCTTCTCTTTGCCATTGGGTCGCATCCTCTTATAACGATGCTAGAAAT
■■Homology search results ■■ -
sp_hit_id P14381
Definition sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
Align length 61
Score (bit) 35.4
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915337|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_D02.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa prot...    35   0.090
sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nyc...    33   0.34 
sp|Q45710|C14AA_BACTS Pesticidal crystal protein cry14Aa OS=Baci...    31   2.2  
sp|Q04116|YHP1_YEAST Homeobox protein YHP1 OS=Saccharomyces cere...    30   3.8  
sp|Q0SMS3|MURD_BORAP UDP-N-acetylmuramoylalanine--D-glutamate li...    29   6.4  
sp|Q5E3Y9|LFTR_VIBF1 Leucyl/phenylalanyl-tRNA--protein transfera...    29   8.4  
sp|Q47L96|PSTB_THEFY Phosphate import ATP-binding protein pstB O...    29   8.4  
sp|Q6KH80|KSGA_MYCMO Dimethyladenosine transferase OS=Mycoplasma...    29   8.4  

>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein
           OS=Xenopus laevis PE=4 SV=1
          Length = 1308

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +1

Query: 178 DKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQGC 357
           +KA+DR+   Y+   ++   FGP+    ++T+ A ++  +  N  +       R ++QGC
Sbjct: 596 EKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGC 655

Query: 358 P 360
           P
Sbjct: 656 P 656


>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog
           OS=Nycticebus coucang PE=1 SV=1
          Length = 1260

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 178 DKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQGC 357
           +KA+D I   ++   +K +G      +LI+ + +   + ++ N   + SF  R   +QGC
Sbjct: 601 EKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGC 660

Query: 358 P 360
           P
Sbjct: 661 P 661


>sp|Q45710|C14AA_BACTS Pesticidal crystal protein cry14Aa
           OS=Bacillus thuringiensis subsp. sotto GN=cry14Aa PE=2
           SV=1
          Length = 1186

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 254 VDLYKL*VQGVNLSYCSMIELWAPLKPED*SSKDA 358
           VD Y + V+G+ L+   M+ +W+ L P D +S+ A
Sbjct: 287 VDAYNVYVKGMTLNVLDMVAIWSSLYPNDYTSQTA 321


>sp|Q04116|YHP1_YEAST Homeobox protein YHP1 OS=Saccharomyces
           cerevisiae GN=YHP1 PE=1 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -2

Query: 285 TPCTQSLYKSTKSRPKAQSFHDFFNV*PHNPIICLVESLLPSTFCSSLKFFLIRTHNCE* 106
           +P T ++   +K +P  QS H +  V    P+      L P+T     + F   TH+ E 
Sbjct: 101 SPFTPTVRVCSKEQPP-QSMHSYKKVNILTPLSAAKAVLTPTTRKEKKRSFAFITHSQET 159

Query: 105 YSIKSQKIPNIAPLRPKR 52
           +  K  KI N    R KR
Sbjct: 160 FPKKEPKIDNARLARRKR 177


>sp|Q0SMS3|MURD_BORAP UDP-N-acetylmuramoylalanine--D-glutamate
           ligase OS=Borrelia afzelii (strain PKo) GN=murD PE=3
           SV=1
          Length = 451

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 178 DKAYDRIMWSYIEEVMK*LGFGP-RLCRLIQTLSAGSKSELLFNDRIVGSF 327
           DKAY +  +S  E   K + F     C L Q +   +K E+ FND ++GSF
Sbjct: 222 DKAYYKY-FSKFESKAKVILFSEFNPCNLDQDIFYSNKGEVYFNDNLIGSF 271


>sp|Q5E3Y9|LFTR_VIBF1 Leucyl/phenylalanyl-tRNA--protein transferase
           OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=aat
           PE=3 SV=1
          Length = 239

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 128 IKKNFKEEQNVEGKSDSTRHMIGLCGHTLKKS*NDWALGLDFVDLYKL*VQGVNLSYCSM 307
           +KK F++       + +T  +I LC  T  K    W +  + ++ YK   +  NL YC  
Sbjct: 81  LKKFFRKSNYNVTLNKATYQVIDLCASTRPKE-ETWIMP-EMINAYK---KLANLGYCHS 135

Query: 308 IELW 319
           +E+W
Sbjct: 136 VEVW 139


>sp|Q47L96|PSTB_THEFY Phosphate import ATP-binding protein pstB
           OS=Thermobifida fusca (strain YX) GN=pstB PE=3 SV=1
          Length = 259

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 239 KPNHFMTSSMYDHIILSYALSSR 171
           +PN F T S+YD++I  Y L++R
Sbjct: 93  RPNPFPTMSIYDNVIAGYKLNNR 115


>sp|Q6KH80|KSGA_MYCMO Dimethyladenosine transferase OS=Mycoplasma
           mobile GN=ksgA PE=3 SV=1
          Length = 254

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 365 GQGHPCLINLLASKEPTILSLNNNSDLLPALRVCISRQSLGPKPNHFMTSSM 210
           G G   L NLL  K   +L+   + +L+P L+  I  ++   K   F+ S +
Sbjct: 38  GPGQGALTNLLVKKSKNVLAYEIDKELIPFLKEKIKAKNFTLKHEDFLKSEI 89
tr_hit_id Q1KSC2
Definition tr|Q1KSC2|Q1KSC2_SORBI Putative non-LTR retroelement reverse transcriptase OS=Sorghum bicolor
Align length 61
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915337|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_D02.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1KSC2|Q1KSC2_SORBI Putative non-LTR retroelement reverse tra...    55   1e-06
tr|Q7XLK6|Q7XLK6_ORYSA OSJNBa0009K15.4 protein OS=Oryza sativa G...    52   1e-05
tr|A5B149|A5B149_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q7XVC3|Q7XVC3_ORYSJ OSJNBa0072D21.13 protein OS=Oryza sativa ...    50   7e-05
tr|Q01LI9|Q01LI9_ORYSA OSIGBa0092E09.9 protein OS=Oryza sativa G...    50   7e-05
tr|B8AS88|B8AS88_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|A3AT53|A3AT53_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|A2XSP3|A2XSP3_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q2R4V1|Q2R4V1_ORYSJ Retrotransposon protein, putative, unclas...    49   1e-04
tr|Q2QUC2|Q2QUC2_ORYSJ Retrotransposon protein, putative, unclas...    49   1e-04
tr|B8B9U8|B8B9U8_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A3BGS3|A3BGS3_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A2ZQQ3|A2ZQQ3_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse tra...    49   1e-04
tr|A5AQ19|A5AQ19_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|Q7XMG7|Q7XMG7_ORYSJ OSJNBa0028I23.15 protein OS=Oryza sativa ...    48   2e-04
tr|A5BXL2|A5BXL2_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|Q2RAL0|Q2RAL0_ORYSJ Retrotransposon protein, putative, unclas...    48   3e-04
tr|Q10PF4|Q10PF4_ORYSJ Retrotransposon protein, putative, unclas...    48   3e-04
tr|A5BJU4|A5BJU4_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q76IL7|Q76IL7_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    47   4e-04
tr|A5CAE9|A5CAE9_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|A5ALG5|A5ALG5_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|Q8H0A3|Q8H0A3_ORYSJ Retrotransposon protein, putative, unclas...    47   5e-04
tr|A5BVL6|A5BVL6_VITVI Putative uncharacterized protein OS=Vitis...    47   5e-04
tr|Q76IL5|Q76IL5_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    47   6e-04
tr|Q76IK6|Q76IK6_CIOIN Pol-like protein OS=Ciona intestinalis GN...    47   6e-04
tr|A5BA79|A5BA79_VITVI Putative uncharacterized protein OS=Vitis...    46   8e-04
tr|A5BY85|A5BY85_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q9SHP2|Q9SHP2_ARATH Putative non-LTR retroelement reverse tra...    45   0.001

>tr|Q1KSC2|Q1KSC2_SORBI Putative non-LTR retroelement reverse
            transcriptase OS=Sorghum bicolor PE=4 SV=1
          Length = 1505

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 39/61 (63%)
 Frame = +1

Query: 178  DKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQGC 357
            +KAYD++ WS++++ ++  GF P+ CR +QT+  G    +  ND I   F+ +R ++QG 
Sbjct: 1095 EKAYDKVKWSFLQQTLRMKGFSPKWCRWVQTMVTGGSVGIKVNDDIGPYFQTKRGLRQGD 1154

Query: 358  P 360
            P
Sbjct: 1155 P 1155


>tr|Q7XLK6|Q7XLK6_ORYSA OSJNBa0009K15.4 protein OS=Oryza sativa
           GN=OSJNBa0009K15.4 PE=4 SV=3
          Length = 332

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 40/61 (65%)
 Frame = +1

Query: 178 DKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQGC 357
           +KAYD++ WS+++++++  GF P+ C+LI +   G    +  ND+I  +F+  + ++QG 
Sbjct: 205 EKAYDKVKWSFVQQMLRMKGFSPKWCQLIASFVQGGHVGIKVNDQIGNNFQTYKGLRQGD 264

Query: 358 P 360
           P
Sbjct: 265 P 265


>tr|A5B149|A5B149_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007641 PE=4 SV=1
          Length = 558

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/62 (37%), Positives = 38/62 (61%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           ++KAYD + WS++  V+K +GFG R  + I+   +  K  +L ND   G F++ R ++QG
Sbjct: 242 IEKAYDHVSWSFLMAVLKKMGFGERWIKWIEWRISTMKFSILINDSPSGFFQSSRGLRQG 301

Query: 355 CP 360
            P
Sbjct: 302 DP 303


>tr|Q7XVC3|Q7XVC3_ORYSJ OSJNBa0072D21.13 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0072D21.13 PE=4 SV=2
          Length = 412

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           L KA+DR+ W +I   MK  GF      L+Q   + S   + FN +   +F A R ++QG
Sbjct: 95  LSKAFDRLEWDFIASAMKKKGFHSNFINLVQGCISSSSFYVTFNGQSYDAFNANRGVRQG 154

Query: 355 CPWP--LFSLPLGRI 393
           CP    LF L L  +
Sbjct: 155 CPLSPYLFVLALNEL 169


>tr|Q01LI9|Q01LI9_ORYSA OSIGBa0092E09.9 protein OS=Oryza sativa
           GN=OSIGBa0092E09.9 PE=4 SV=1
          Length = 401

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           L KA+DR+ W +I   MK  GF      L+Q   + S   + FN +   +F A R ++QG
Sbjct: 84  LSKAFDRLEWDFIASAMKKKGFHSNFINLVQGCISSSSFYVTFNGQSYDAFNANRGVRQG 143

Query: 355 CPWP--LFSLPLGRI 393
           CP    LF L L  +
Sbjct: 144 CPLSPYLFVLALNEL 158


>tr|B8AS88|B8AS88_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15342 PE=4 SV=1
          Length = 815

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           L KA+DRI WS+I + ++  GF     RL+ +    +   ++ N +  G F A+R I+QG
Sbjct: 393 LSKAFDRIEWSFIADALRRKGFHGNFIRLVLSCINSANFSVIINGQSYGYFSAQRGIRQG 452

Query: 355 CP 360
           CP
Sbjct: 453 CP 454


>tr|A3AT53|A3AT53_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013975 PE=4 SV=1
          Length = 1362

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           L KA+DR+ W +I   MK  GF      L+Q   + S   + FN +   +F A R ++QG
Sbjct: 95  LSKAFDRLEWDFIASAMKKKGFHSNFINLVQGCISSSSFYVTFNGQSYDAFNANRGVRQG 154

Query: 355 CPWP--LFSLPLGRI 393
           CP    LF L L  +
Sbjct: 155 CPLSPYLFVLALNEL 169


>tr|A2XSP3|A2XSP3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15629 PE=4 SV=1
          Length = 526

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 175 LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
           L KA+DR+ W +I   MK  GF      L+Q   + S   + FN +   +F A R ++QG
Sbjct: 95  LSKAFDRLEWDFIASAMKKKGFHSNFINLVQGCISSSSFYVTFNGQSYDAFNANRGVRQG 154

Query: 355 CPWP--LFSLPLGRI 393
           CP    LF L L  +
Sbjct: 155 CPLSPYLFVLALNEL 169


>tr|Q2R4V1|Q2R4V1_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g27210 PE=4 SV=1
          Length = 1296

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 37/61 (60%)
 Frame = +1

Query: 178  DKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQGC 357
            +KAYD++ WS++++ ++  GF P+ C  I +   G    +  ND+I  +F+  + ++QG 
Sbjct: 991  EKAYDKVKWSFVQQTLRMKGFSPKWCEWIVSFIQGGHVGIKVNDQIGDNFQTHKGLRQGD 1050

Query: 358  P 360
            P
Sbjct: 1051 P 1051


>tr|Q2QUC2|Q2QUC2_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g16750 PE=4 SV=1
          Length = 1913

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +1

Query: 175  LDKAYDRIMWSYIEEVMK*LGFGPRLCRLIQTLSAGSKSELLFNDRIVGSFEARRLIKQG 354
            L KAYDR+ W ++E+ M  LGF PR  + I T  +  +  + FN  ++ +F   R ++QG
Sbjct: 1152 LSKAYDRVDWVFLEQTMCKLGFAPRWIKWIMTCLSSVRYSIKFNGTLLDTFAPSRGLRQG 1211

Query: 355  CP 360
             P
Sbjct: 1212 DP 1213