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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915340
Clone id YMU001_000070_D05
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTTGCGGCCGCGAATGGTAGGATTCGAGAAGTGTGGGTGGAAAAACTCC
TCGGCTAGGACACAAAGAAGAAGTTGAACACGTAGGGCAGGGCTAGGACTTGCAACAAGG
CAGTAGGAAACTATTGTGAAGAGGGTCCTAAAGAGAGAATCTACCGTGTAGTGCTATAGG
TGACCATGGAAAGGAAACACTCTGCGTCATCATCATAGCAATAGGGCAGTAGGTGAGGGG
AGATGCCTGGGAGCAACAGGAGTCATAGATGTTGTGAGTACTCCAGTGACGTGTTGCCTC
CCTTTTGCAAGAGAAATTGATTTATCAAAAATAGAATCCTCAAAGATTCTATCTAAAAGT
GGAGTGGAGCGAGTATGTATGTTATAGCAGCACACTGTATTTAGATGAATCAAGGCCCAT
GAGGAAATCATCTTAGTTTAACGTTCTAATCAAATGGAGTGTATGGAGTTCAAGAACATA
CATCATGTTGTAAGCTTGTATAATTCACTGTGGTTCTAGAGCTTCA
■■Homology search results ■■ -
sp_hit_id P38572
Definition sp|P38572|UPK1A_BOVIN Uroplakin-1a OS=Bos taurus
Align length 46
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915340|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_D05.
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38572|UPK1A_BOVIN Uroplakin-1a OS=Bos taurus GN=UPK1A PE=1 SV=1    32   2.1  
sp|Q9D132|UPK1A_MOUSE Uroplakin-1a OS=Mus musculus GN=Upk1a PE=1...    31   2.8  
sp|O00322|UPK1A_HUMAN Uroplakin-1a OS=Homo sapiens GN=UPK1A PE=2...    30   6.3  

>sp|P38572|UPK1A_BOVIN Uroplakin-1a OS=Bos taurus GN=UPK1A PE=1 SV=1
          Length = 258

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -2

Query: 277 REATRHWSTHNIYDSCCSQASPLTYCPIAMMM---TQSVSFPWSPI 149
           RE TR W    I   CC  + P+ +          T  V FPW P+
Sbjct: 144 RELTRLWDRIMIEQECCGTSGPMDWVNFTSAFRATTPEVVFPWPPL 189


>sp|Q9D132|UPK1A_MOUSE Uroplakin-1a OS=Mus musculus GN=Upk1a PE=1
           SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -2

Query: 277 REATRHWSTHNIYDSCCSQASPL---TYCPIAMMMTQSVSFPWSPI 149
           +E TR W    I   CC  + P+    Y       T  V FPW P+
Sbjct: 143 QELTRLWDRIMIEQECCGTSGPMDWVNYTSAFRAATPEVVFPWPPL 188


>sp|O00322|UPK1A_HUMAN Uroplakin-1a OS=Homo sapiens GN=UPK1A PE=2
           SV=1
          Length = 258

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -2

Query: 277 REATRHWSTHNIYDSCCSQASPLTYCPIAMMM---TQSVSFPWSPI 149
           +E TR W    I   CC  + P+ +          T  V FPW P+
Sbjct: 144 QELTRLWDRVMIEQECCGTSGPMDWVNFTSAFRAATPEVVFPWPPL 189
tr_hit_id Q98UH9
Definition tr|Q98UH9|Q98UH9_ORYLA Guanylate cyclase OS=Oryzias latipes
Align length 47
Score (bit) 33.5
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915340|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_D05.
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q98UH9|Q98UH9_ORYLA Guanylate cyclase OS=Oryzias latipes GN=O...    33   5.7  
tr|Q7ZZR6|Q7ZZR6_ORYLA Guanylate cyclase OS=Oryzias latipes GN=O...    33   5.7  
tr|A4VCF8|A4VCF8_DANRE Putative uncharacterized protein (Fragmen...    33   9.7  

>tr|Q98UH9|Q98UH9_ORYLA Guanylate cyclase OS=Oryzias latipes
           GN=OlGC8 PE=3 SV=2
          Length = 859

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 292 NFSCKREATRHWSTHNIYDSCCSQASPLTYCPIAMMMTQSVSFPWSP 152
           +F  + E   +W   N  ++CC   + +  CP+  M T+S+  PW P
Sbjct: 102 SFCERHECPANWKDAN-GENCCIHHANIHSCPLGYMTTESICGPWIP 147


>tr|Q7ZZR6|Q7ZZR6_ORYLA Guanylate cyclase OS=Oryzias latipes
           GN=OlGC8 PE=2 SV=1
          Length = 859

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 292 NFSCKREATRHWSTHNIYDSCCSQASPLTYCPIAMMMTQSVSFPWSP 152
           +F  + E   +W   N  ++CC   + +  CP+  M T+S+  PW P
Sbjct: 102 SFCERHECPANWKDAN-GENCCIHHANIHSCPLGYMTTESICGPWIP 147


>tr|A4VCF8|A4VCF8_DANRE Putative uncharacterized protein (Fragment)
           OS=Danio rerio PE=2 SV=1
          Length = 268

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
 Frame = -3

Query: 375 NTVCCYNIHTRSTPLLD--------RIFEDSIFDKSISLAKGRQ----HVTGVLTTSMTP 232
           + V   N H  STPL D        R+FE S+F  ++S  KG         G L T+ T 
Sbjct: 149 SNVSYINAHATSTPLGDAAENAAIKRLFEPSVFFLAVSSTKGATGHLLGAAGALETAFTA 208

Query: 231 VAPRHLPSPTALLL 190
           +A  H   P  L L
Sbjct: 209 LACHHAILPPTLNL 222