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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915350
Clone id YMU001_000070_E04
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTGAAGCTTGAGAGCAGCACCTTGTGGTGTATGTGGAGCCTCTGAGCACCCATCACCTA
GAACAAGGCCTCTCATGGTTGCTTGCAGCTTTGGGAGAAGTTTCATCGCGTAAAGTAGTA
GAAAACTCTCTTTCTCCCTTGTCTAGCTGCTGCAAATTCCCTGTTTTCAGCCCCTAATCA
CTTGTATTAGGGTGAATTTCAGCAAAGTCTTATTAGAATCTCATTCCCCACTACCTACTC
TACACATACACCAAGTTTGGAGCATTTCCATTGCGAGAAGGACCTCCATTTTGGCATTGG
AACGCGCTCAGTTAACAATTTCTGGTTATGTGCAGAAAAATTACAGCAAGCGTGTGTGTG
TGTGTGTTGCATGTATCTGTGGTTGGTTAATTGCAGGAATGATTACGTCCAGGCATAGTT
AGCGGAAGAT
■■Homology search results ■■ -
sp_hit_id Q5F3M0
Definition sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcription subunit 24 OS=Gallus gallus
Align length 82
Score (bit) 32.3
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915350|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_E04.
         (430 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcriptio...    32   0.82 
sp|P93286|CCMF_ARATH Putative cytochrome c biogenesis ccmF-like ...    30   3.2  
sp|O68032|SBCC_RHOCA Nuclease sbcCD subunit C OS=Rhodobacter cap...    30   5.3  
sp|Q3U129|B3GNL_MOUSE UDP-GlcNAc:betaGal beta-1,3-N-acetylglucos...    30   5.5  

>sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcription
           subunit 24 OS=Gallus gallus GN=MED24 PE=2 SV=1
          Length = 986

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 159 PCFQPLITCIRVNFSKVLLESHSPLPTLHIHQVW-SISIARRTSILALERAQLTISGY-- 329
           PCF+P  T +    + +   S   L  ++ H+V  SIS A    + A E + LT      
Sbjct: 542 PCFRPDSTKVESLVALLNNSSEMKLVQINWHEVCLSISAAILEILNAWENSVLTFESIQK 601

Query: 330 VQKNYSKRVCVCVACICGWLIA 395
           +  N   +VC    C   WL+A
Sbjct: 602 ITDNIKGKVCSMAVCAVAWLVA 623


>sp|P93286|CCMF_ARATH Putative cytochrome c biogenesis ccmF-like
           mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC
           PE=2 SV=2
          Length = 442

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 209 LIRISFPTTYSTHTPSLEHFHCEKDLHFGIGTRSVNNFWL 328
           L+ I+FP +Y      LEHF     LH+ +  R  NNFWL
Sbjct: 328 LLLINFPASYKNG--KLEHF-----LHWWMKNRKHNNFWL 360


>sp|O68032|SBCC_RHOCA Nuclease sbcCD subunit C OS=Rhodobacter
           capsulatus GN=sbcC PE=3 SV=1
          Length = 1238

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 5/23 (21%)
 Frame = +3

Query: 6   SLRA-----APCGVCGASEHPSP 59
           SLRA     +PC VCGA EHP+P
Sbjct: 603 SLRAQLSAGSPCPVCGALEHPTP 625


>sp|Q3U129|B3GNL_MOUSE UDP-GlcNAc:betaGal
           beta-1,3-N-acetylglucosaminyltransferase-like protein 1
           OS=Mus musculus GN=B3gntl1 PE=2 SV=1
          Length = 357

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 381 HRYMQHTHTHACCNFS--AHNQKLLTERVPMPKWRSFSQWKCSKLG 250
           +RY  +  TH+    +   H    L E+V +P W+SF+ W   K G
Sbjct: 225 YRYHLYAATHSVLEMTIWTHRVHFLEEQV-LPHWKSFTIWNAGKQG 269
tr_hit_id A9SUQ3
Definition tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915350|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_E04.
         (430 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|Q6DDS2|Q6DDS2_XENLA LOC445860 protein (Fragment) OS=Xenopus l...    33   7.1  
tr|A4IFW1|A4IFW1_XENTR LOC100037858 protein OS=Xenopus tropicali...    33   9.3  
tr|B7FID4|B7FID4_MEDTR Putative uncharacterized protein OS=Medic...    33   9.3  
tr|B7D757|B7D757_9BURK Glycosyl transferase group 1 OS=Diaphorob...    33   9.4  

>tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47696 PE=4 SV=1
          Length = 187

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 28/39 (71%)
 Frame = +1

Query: 13  EQHLVVYVEPLSTHHLEQGLSWLLAALGEVSSRKVVENS 129
           E+ +++ V PL+   + +GL+W +AA+GE+ S K+VE S
Sbjct: 147 EKEIIIDV-PLALRIMSKGLTWPVAAIGELRSGKLVEKS 184


>tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47692 PE=4 SV=1
          Length = 187

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 28/39 (71%)
 Frame = +1

Query: 13  EQHLVVYVEPLSTHHLEQGLSWLLAALGEVSSRKVVENS 129
           E+ +++ V PL+   + +GL+W +AA+GE+ S K+VE S
Sbjct: 147 EKEIIIDV-PLALRIMSKGLTWPVAAIGELRSGKLVEKS 184


>tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151795 PE=4 SV=1
          Length = 212

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +1

Query: 13  EQHLVVYVEPLSTHHLEQGLSWLLAALGEVSSRKVVENS 129
           E+ +++ V PL+   + +G +W LAA+GE+ S K+VE S
Sbjct: 167 EKEIIIDV-PLALRVMSKGFTWPLAAIGELRSGKLVEKS 204


>tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130189 PE=4 SV=1
          Length = 240

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +1

Query: 13  EQHLVVYVEPLSTHHLEQGLSWLLAALGEVSSRKVVENS 129
           E+ +++ V PL+   + +G +W LAA+GE+ S K+VE S
Sbjct: 195 EKEIIIDV-PLALRVMSKGFTWPLAAIGELRSGKLVEKS 232


>tr|Q6DDS2|Q6DDS2_XENLA LOC445860 protein (Fragment) OS=Xenopus
           laevis GN=LOC445860 PE=2 SV=1
          Length = 473

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query: 143 LAAANSLFSAPNHLY*GEFQQSLIRISFPTTYSTHTPSLEHFHCEKDLHF--GIGTRSVN 316
           L +AN+++ + +H++    Q+SL+       Y TH P ++H++C   + F  G+G     
Sbjct: 15  LQSANAVYKSSDHIHSDSEQESLLGEHRVKPYYTHKP-VDHYNCTYIIFFILGVGASLPW 73

Query: 317 NFWLCAE 337
           NF+  A+
Sbjct: 74  NFFCTAK 80


>tr|A4IFW1|A4IFW1_XENTR LOC100037858 protein OS=Xenopus tropicalis
           GN=slc29a3 PE=2 SV=1
          Length = 208

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 143 LAAANSLFSAPNHLY*GEFQQSLIRISFPTTYSTHTPSLEHFHCEKDLHF--GIGTRSVN 316
           L +ANS++   +H++    Q+SL+       Y  H P ++H+ C   + F  GIGT    
Sbjct: 6   LQSANSIYKPSDHIHSDSEQESLLGEHRVKPYRIHKP-VDHYCCTYIIFFLLGIGTSLPW 64

Query: 317 NFWLCAE 337
           NF+  A+
Sbjct: 65  NFFCTAK 71


>tr|B7FID4|B7FID4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 325

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
 Frame = +1

Query: 40  PLSTHHLEQGLSWLLAALGEVSSRKVVENSLSPLSSCCKFP-VFSP*SL------VLG*I 198
           P STH+ + G          V     +E    P++S   F   F+  ++      VLG +
Sbjct: 108 PASTHYYKNG----------VDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRM 157

Query: 199 SAKSY*NLIPHYLLYTYTKFGAFPLREGPPFWHWNAL 309
           + K++   +P +L+++YT  GAF L  G   +HW  +
Sbjct: 158 NIKAWMTFVPLWLIFSYT-VGAFSLWGGGFLYHWGVI 193


>tr|B7D757|B7D757_9BURK Glycosyl transferase group 1
           OS=Diaphorobacter sp. TPSY GN=DtpsyDRAFT_2320 PE=4 SV=1
          Length = 367

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 204 KVLLESHSPLPTLHIHQVWSISIARRTSILALERAQLTISGYVQKNYSKRVCVCVACICG 383
           + L+  H P   LH H   S  +AR    L  +    T+ G+  K    RV   VA  C 
Sbjct: 82  RALIREHEP-DILHAHSAVSGVVARLAGRLCRKPVIYTVHGFAFKPEVPRVRRTVAWCCE 140

Query: 384 WLIA 395
           WL+A
Sbjct: 141 WLLA 144