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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915361
Clone id YMU001_000070_F04
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACGGCTCTTTAATGTGCAAGGATGCGAGACTAAGCTCTATCCTTTATCTTCTGTGGGAC
AGGAAGGCAGGTGTTTATGCTCCCAGCTCAAACAGTTCCCGCCTTTTGCAAGAGTTGTCT
TGGCAAGGTTCTGTTGGTTTTCTGTTATATATAAGAGATTTTGTGTAATTTAAAATTCTG
CTTATCAGTACAATCTTAACATTTGCTTCTATGGCTATTGTAGTTGAAAAGAGAGGGTGT
TATGAAGAAGAACTCAAACACAGGTTTAGACCTTTGCAAAAATACTTGGGCTGCAGATAC
GGCAGGCATGTCTGCAAATATGTAGCTAACTAGGTTGTAGTAGAGCAATTCTGATGATGT
AGTGAAGTCTTATTTCTACCTTTCATGCCTAAGTGTGGAGCTTGTCTTTGCCATAGACCT
ATTGCACACTTGGAGAAGGAAAATAGCAGAACCC
■■Homology search results ■■ -
sp_hit_id Q4A9N9
Definition sp|Q4A9N9|ENGB_MYCHJ Probable GTP-binding protein engB OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
Align length 123
Score (bit) 35.0
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915361|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F04.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4A9N9|ENGB_MYCHJ Probable GTP-binding protein engB OS=Mycopl...    35   0.15 
sp|Q6BVF9|GAR1_DEBHA H/ACA ribonucleoprotein complex subunit 1 O...    32   0.97 
sp|A3GHP2|GAR1_PICST H/ACA ribonucleoprotein complex subunit 1 O...    31   2.2  
sp|A6SDR8|GAR1_BOTFB H/ACA ribonucleoprotein complex subunit 1 O...    31   2.8  
sp|Q1WUG5|PYRH_LACS1 Uridylate kinase OS=Lactobacillus salivariu...    30   4.8  
sp|Q923K1|TS1R3_RAT Taste receptor type 1 member 3 OS=Rattus nor...    30   6.4  
sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Hom...    29   8.2  
sp|P07735|GPDA_DROVI Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|Q27928|GPDA_DROPS Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|P13706|GPDA_DROME Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|O97463|GPDA_DROKA Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|Q27567|GPDA_DROEZ Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|Q27556|GPDA_DROAE Glycerol-3-phosphate dehydrogenase [NAD+], ...    29   8.4  
sp|Q5U7M9|SEMG2_MACNE Semenogelin-2 OS=Macaca nemestrina GN=SEMG...    27   8.8  
sp|Q5U7N1|SEMG2_HYLLA Semenogelin-2 OS=Hylobates lar GN=SEMG2 PE...    27   8.8  
sp|Q6X2M3|SEMG2_HYLKL Semenogelin-2 OS=Hylobates klossii GN=SEMG...    27   8.9  
sp|Q5U7N3|SEMG2_GORGO Semenogelin-2 OS=Gorilla gorilla gorilla G...    27   9.0  
sp|Q5U7N4|SEMG2_PANTR Semenogelin-2 OS=Pan troglodytes GN=SEMG2 ...    27   9.1  

>sp|Q4A9N9|ENGB_MYCHJ Probable GTP-binding protein engB
           OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
           NCTC 10110) GN=engB PE=3 SV=2
          Length = 198

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
 Frame = -2

Query: 453 GSAIFLLQVCNRSMAKTSSTLRHER*K*DFTTSSELLYYNLVSYIFADMPAVSAAQV--- 283
           G +  +  + N+ +AKTS+     +    +   SE L+ +L  Y +A +      Q+   
Sbjct: 49  GKSTLINALANKKIAKTSTKPGRTQLLNFYKNESEKLFVDLPGYGYAAVSKTKKDQIDRI 108

Query: 282 ---FLQRSKPVFEFFFITPSLFNYNSHRSKC*DCTDKQNFKLHKISYI*QKTNRTLPRQL 112
              + Q+ +P+   F I  +   + +      +   KQ FKLH ++    KTN++    L
Sbjct: 109 IAGYFQKDQPISAVFLILDARVGFTNLDYIMIEYIIKQGFKLHILANKIDKTNQSTRAIL 168

Query: 111 LQK 103
           L +
Sbjct: 169 LNQ 171


>sp|Q6BVF9|GAR1_DEBHA H/ACA ribonucleoprotein complex subunit 1
           OS=Debaryomyces hansenii GN=GAR1 PE=3 SV=1
          Length = 215

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 278 CKGLNLCLSSSS*HPLFSTTIAIEANVKIVLISRILNYTKSLIYNRKPTEPCQDNSCKRR 99
           C+G  +C S +   P F+  I +E   ++  +  IL     + +  KP+E  Q +S K  
Sbjct: 39  CEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPSEGVQADSFKDG 98

Query: 98  ELFELG 81
           + F +G
Sbjct: 99  DKFYIG 104


>sp|A3GHP2|GAR1_PICST H/ACA ribonucleoprotein complex subunit 1
           OS=Pichia stipitis GN=GAR1 PE=3 SV=1
          Length = 202

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 278 CKGLNLCLSSSS*HPLFSTTIAIEANVKIVLISRILNYTKSLIYNRKPTEPCQDNSCKRR 99
           C+G  +C S +   P F+  I +E   +I  +  IL     + +  KP+E  + +S K  
Sbjct: 39  CEGDIVCRSINVKIPYFNAPIYLENKTQIGKVDEILGPLNEVFFTIKPSEGVKADSFKEG 98

Query: 98  ELFELG 81
           + F +G
Sbjct: 99  DKFFIG 104


>sp|A6SDR8|GAR1_BOTFB H/ACA ribonucleoprotein complex subunit 1
           OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3
           SV=1
          Length = 221

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -3

Query: 275 KGLNLCLSSSS*HPLFSTTIAIEANVKIVLISRILNYTKSLIYNRKPTEPCQDNSCKRRE 96
           +G  +C S ++  P F+  I +E    I  +  IL     + +  KPTE  Q  S K  +
Sbjct: 58  EGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSFKTGD 117

Query: 95  LFELG 81
            F +G
Sbjct: 118 KFYIG 122


>sp|Q1WUG5|PYRH_LACS1 Uridylate kinase OS=Lactobacillus salivarius
           subsp. salivarius (strain UCC118) GN=pyrH PE=3 SV=1
          Length = 240

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
 Frame = -3

Query: 422 IGLWQRQAPHLGMKGRNKTSLHHQNCSTTT*LATYLQTCL-------PYLQPK---YFCK 273
           IG+ + QA ++GM G    +L  Q+   +  + T +QT +       PY++ K   +  K
Sbjct: 66  IGMERAQADYIGMLGTVMNALALQDSLESVGVPTRVQTAIEMRQVAEPYIRRKAIRHLEK 125

Query: 272 GLNLCLSSSS*HPLFSTTI-----AIEANVKIVLISR 177
           G  +  ++ +  P FST       A E N +++L+++
Sbjct: 126 GRIVIFAAGTGSPYFSTDTTAALRASELNAEVILMAK 162


>sp|Q923K1|TS1R3_RAT Taste receptor type 1 member 3 OS=Rattus
           norvegicus GN=Tas1r3 PE=2 SV=1
          Length = 858

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 358 CSEVLFLPFMPKCGACLCHRPIAHL 432
           C  VL  P  P+  +CL  +P+AHL
Sbjct: 623 CLSVLLFPGRPRSASCLAQQPMAHL 647


>sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo
           sapiens GN=PI4KA PE=1 SV=3
          Length = 2044

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -3

Query: 311 TCLP---YLQPKYFCKGLNLCLSSSS*HPLFSTTIAIEANVKIVLISRILNYTKSLI 150
           +CLP    L+P+Y+   ++   SS S  PLF+     E N+ + ++  +LN  K ++
Sbjct: 229 SCLPDGTALEPEYYFSTIS---SSFSVSPLFNGVTYKEFNIPLEMLRELLNLVKKIV 282


>sp|P07735|GPDA_DROVI Glycerol-3-phosphate dehydrogenase [NAD+],
           cytoplasmic OS=Drosophila virilis GN=Gpdh PE=1 SV=3
          Length = 353

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 71  VFMLPAQTVPAFCKSCLGKV 130
           +F++P Q +P FCK  LGK+
Sbjct: 91  IFVVPHQFIPNFCKQLLGKI 110


>sp|Q27928|GPDA_DROPS Glycerol-3-phosphate dehydrogenase [NAD+],
           cytoplasmic OS=Drosophila pseudoobscura pseudoobscura
           GN=Gpdh PE=3 SV=2
          Length = 360

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 71  VFMLPAQTVPAFCKSCLGKV 130
           +F++P Q +P FCK  LGK+
Sbjct: 91  IFVVPHQFIPNFCKQLLGKI 110


>sp|P13706|GPDA_DROME Glycerol-3-phosphate dehydrogenase [NAD+],
           cytoplasmic OS=Drosophila melanogaster GN=Gpdh PE=1 SV=3
          Length = 363

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 71  VFMLPAQTVPAFCKSCLGKV 130
           +F++P Q +P FCK  LGK+
Sbjct: 91  IFVVPHQFIPNFCKQLLGKI 110
tr_hit_id B4K7X6
Definition tr|B4K7X6|B4K7X6_DROMO GI23407 OS=Drosophila mojavensis
Align length 116
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915361|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F04.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4K7X6|B4K7X6_DROMO GI23407 OS=Drosophila mojavensis GN=GI234...    33   5.4  

>tr|B4K7X6|B4K7X6_DROMO GI23407 OS=Drosophila mojavensis GN=GI23407
           PE=4 SV=1
          Length = 514

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
 Frame = +1

Query: 64  KAGVYAPSSNSSRLLQELSWQGSVGFLLY--IRDFV*FKILLISTILTFASMAIVVEKRG 237
           +AG   P S    + +   W  ++ + LY    +FV    ++I T      M  V  KRG
Sbjct: 264 RAGTQVPFSMHLMIKESNQWSNNMNYHLYENTENFVSIDPMVIQTSKNTEVMDPV--KRG 321

Query: 238 CYEEELKHRFRPLQKYLGCRYGRHVCKYVAN*VVVEQF**CSEVLFLPFMPKCGAC 405
           CY E  +H   P   Y    Y R  C +      V     CS  L+LP +     C
Sbjct: 322 CYFEHERH---PDYPYRDLPYSRSNCIFTCLQWTVIDACNCSMPLYLPDIDDTREC 374