BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915367|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F10.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SRV0|RNH2_MYCCT Ribonuclease HII OS=Mycoplasma capricolum s...    31   3.2  
sp|Q502G2|TM41A_DANRE Transmembrane protein 41A OS=Danio rerio G...    30   7.4  

>sp|Q2SRV0|RNH2_MYCCT Ribonuclease HII OS=Mycoplasma capricolum
           subsp. capricolum (strain California kid / ATCC 27343 /
           NCTC 10154) GN=rnhB PE=3 SV=1
          Length = 207

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = +3

Query: 165 HIHTISNMQEDDFPISNGLLLSLLFITRRKLSCSVLQLHVLFGFKRSKTFCSQPLGQ*LQ 344
           +I T+S ++ DD   S      L  +TR K+     Q++  +GFK  K +C+       +
Sbjct: 125 NIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCT-------K 177

Query: 345 NDLLACVLYCILGIDQK 395
             LLA   Y +L I +K
Sbjct: 178 KHLLAIQKYGVLDIHRK 194


>sp|Q502G2|TM41A_DANRE Transmembrane protein 41A OS=Danio rerio
           GN=tmem41a PE=2 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
 Frame = -2

Query: 471 CIQVHHGLAAISLLSDKYPY----------CALL*TSGLCQEYSTTHMQVDHFEATG 331
           C+Q    L+ IS L D + +          C  L    L ++YST H+ +D  E  G
Sbjct: 217 CVQTGSMLSQISSLDDLFSWSVVLKLLLTACVALLPGALIRKYSTRHLHLDGLETNG 273

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915367|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_F10.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0AH91|Q0AH91_NITEC Lipopolysaccharide biosynthesis OS=Nitros...    34   4.2  

>tr|Q0AH91|Q0AH91_NITEC Lipopolysaccharide biosynthesis
           OS=Nitrosomonas eutropha (strain C91) GN=Neut_1035 PE=4
           SV=1
          Length = 660

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
 Frame = +3

Query: 147 FFSSSMHIHTISNMQEDDFPISNGLLLSLLFITRRKLSCSVLQLHVLFGFKRSKTFC--S 320
           F  S +    I+N+Q DD  + N LL      T R +S   + LH       SK  C  +
Sbjct: 511 FLLSGLTPDEIANLQNDDVDLENNLL------TIRNVSTRTIPLHPALATLYSKHGCCLT 564

Query: 321 QPLGQ*LQNDLLACVLYCI-LGIDQKFRVEHSKGTYHSTRISQLVHGGL 464
            P G  L  + L  +L C+ +  D       S  T   T I  L+  G+
Sbjct: 565 DPTGNRLGREDLEALLTCLQIDADLLITSRISAETLRQTYILYLIRQGM 613