BP915375
Clone id YMU001_000070_G06
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGTCCCCTCAATTCCAGTGTCATCAAAAGGGTGTAGCAGTGTAGACTCCTCCAAATTGTA
CGTCTCATTGTCTGCTTTGTGTCCATTCATTGAAGTCTCCCATGATGAGGAAGACCTATC
CGAGCCTAGAATACTCCATGATCCCCTTTACAAGGCATGAATATGGTGAGAGGGTGTCAG
TAATCAGGGGTCCTTCTCACTTTGATGGGAGTGCAGACGTTAGCTCTACACAAGGTCCTT
CTCCCTTCCTCCTGCTCCATTGAATCCAGTCCCTGTGCATCCTCTCCCACTATCACCAAC
TTCGACCCTGATGGGCCGAAGTAGCAGAGACCAATGTATAGAAGCTCTCCTTATTAAGCT
GGAGTCTAATCCGCATGAAGTGGGCCTCTGGTCTTGTGTCATGGTCTATATCGTCCCTTG
TAGCTCTCGACTATATAAGACTGCTACTACTCCTAAGCCCCTATAAGTATTGTGTCGCAT
ACACTTCCGATGT
■■Homology search results ■■ -
sp_hit_id Q5EBF1
Definition sp|Q5EBF1|5NTC_XENTR Cytosolic purine 5'-nucleotidase OS=Xenopus tropicalis
Align length 46
Score (bit) 30.4
E-value 4.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915375|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_G06.
(493 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5EBF1|5NTC_XENTR Cytosolic purine 5'-nucleotidase OS=Xenopus... 30 4.5
sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15... 30 4.6
sp|Q6DKB0|5NTC_XENLA Cytosolic purine 5'-nucleotidase OS=Xenopus... 30 7.8

>sp|Q5EBF1|5NTC_XENTR Cytosolic purine 5'-nucleotidase OS=Xenopus
tropicalis GN=nt5c2 PE=2 SV=1
Length = 568

Score = 30.4 bits (67), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3

Query: 66 HCLLCVHSLKSPMMRKTYPSLEYSMIPFTRHEYGERVSVIRGPSHF 203
H + +H +SPM + SL++ F RH+ +S I+ P+ F
Sbjct: 492 HTHVDIHETESPMATRNRCSLDFKDSDFKRHQLTRSISEIKPPNLF 537


>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15
OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1
Length = 474

Score = 30.4 bits (67), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2

Query: 141 SWSILGSDRSSSSWETSMNGHKADNETYNLEESTL 37
S+ I G SS++W+ + +G + N+ YN +S L
Sbjct: 105 SYDIRGQALSSATWDNAEDGENSKNDNYNENQSAL 139


>sp|Q6DKB0|5NTC_XENLA Cytosolic purine 5'-nucleotidase OS=Xenopus
laevis GN=nt5c2 PE=2 SV=1
Length = 569

Score = 29.6 bits (65), Expect = 7.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3

Query: 66 HCLLCVHSLKSPMMRKTYPSLEYSMIPFTRHEYGERVSVIRGPSHF 203
H + +H +SPM + SL++ F RH +S I+ P+ F
Sbjct: 492 HAHVDIHESESPMATRNRCSLDFKDSEFKRHHLTRSISEIKPPNLF 537


tr_hit_id A6WW99
Definition tr|A6WW99|A6WW99_OCHA4 Glycyl-tRNA synthetase, beta subunit OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
Align length 50
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915375|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_G06.
(493 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6WW99|A6WW99_OCHA4 Glycyl-tRNA synthetase, beta subunit OS=O... 35 1.9
tr|Q6CFF5|Q6CFF5_YARLI YALI0B07513p OS=Yarrowia lipolytica GN=YA... 34 3.2

>tr|A6WW99|A6WW99_OCHA4 Glycyl-tRNA synthetase, beta subunit
OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
NCTC 12168) GN=Oant_0522 PE=4 SV=1
Length = 764

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -3

Query: 329 LCYFGPSGSKLVIVGEDAQGLDSMEQEEGRRTLCRANVCTPIKVRRTPDY 180
LC FGP + V++ D G+ S G R L PIKVRR DY
Sbjct: 163 LCTFGPETEETVVIDFDVDGIKSGNVTYGHRFLSDGQ---PIKVRRFEDY 209


>tr|Q6CFF5|Q6CFF5_YARLI YALI0B07513p OS=Yarrowia lipolytica
GN=YALI0B07513g PE=4 SV=1
Length = 807

Score = 34.3 bits (77), Expect = 3.2
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -3

Query: 296 VIVGEDAQGLDSMEQEEGRRTLCRANVCTPIKVRRTPDY*HPLTIFMPCKGDHGVF 129
++ G DA G D ++ + L A++ +P+ +RRT D L+ ++P K +H VF
Sbjct: 425 ILKGRDADGTDKDVEKAEAKLLEMASIVSPLIIRRTNDI---LSKYLPVKYEHVVF 477