BP915379 |
Clone id |
YMU001_000070_G10 |
Library |
YMU01 |
Length |
498 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000070_G10. |
Accession |
BP915379 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTTGGGGTGAAGTTGATCTGGCCAAAGTTTGTTTTGATAACCTTCGTGCGTTGGATGCGA GCGAGCCTACAATATACGCACTTATGTTGGAGGTATACGCCAATGCTGGCATGTGGGACC AGTGGATAGCAGTAAATGAGATGCGAAGCTCAGCGGCATTGTGGAAGGTGCCTGGAGTGG CCTTTGTTGAGGTAGGCAGCAAGATACATGGCTTTACCGTGGGTGATAAAAGCCTTCTTA ATAGCGAGCTATTAAAAAAGCTGAATGGCCTGGAAGAGCGGTTAAGAAGCATTGGTCACG TGCCTCATTGTGTTGCTAGCCTTTCACATGAGTTGAAAAACTAGTTTTGTATGGATTCTG ATTTTATACTCAAAATAAACACCATGTGATGTGAACACAGCACGCATGTGAATGATCGAA GCCTGTGCATACCTAGAGTAACTGGATCATAGGAAAGAGTTATCTATGCAATGTACATTA GCTAGAGCGTATGCATAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LN01 |
Definition |
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana |
Align length |
74 |
Score (bit) |
53.9 |
E-value |
4.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3U1U3 |
Definition |
tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii |
Align length |
75 |
Score (bit) |
66.6 |
E-value |
6.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915379|Adiantum capillus-veneris mRNA, clone: YMU001_000070_G10. (498 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragmen... 67 6e-10 tr|B3U1U5|B3U1U5_ISOEN Pentatricopeptide repeat protein (Fragmen... 60 7e-08 tr|A7PAH3|A7PAH3_VITVI Chromosome chr14 scaffold_9, whole genome... 57 5e-07 tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07 tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragmen... 57 6e-07 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07 tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome... 57 6e-07 tr|A5C1S9|A5C1S9_VITVI Putative uncharacterized protein OS=Vitis... 57 6e-07 tr|Q94LP5|Q94LP5_ORYSJ Os10g0558600 protein OS=Oryza sativa subs... 56 8e-07 tr|Q8SB86|Q8SB86_ORYSA Putative pentatricopeptide repeat domain ... 56 8e-07 tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis... 56 8e-07 tr|A3C789|A3C789_ORYSJ Putative uncharacterized protein OS=Oryza... 56 8e-07 tr|A7PPB6|A7PPB6_VITVI Chromosome chr8 scaffold_23, whole genome... 56 1e-06 tr|B8BI71|B8BI71_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-06 tr|A7PPB5|A7PPB5_VITVI Chromosome chr8 scaffold_23, whole genome... 55 2e-06 tr|A7P2H4|A7P2H4_VITVI Chromosome chr1 scaffold_5, whole genome ... 55 2e-06 tr|A7Q4V2|A7Q4V2_VITVI Chromosome chr10 scaffold_50, whole genom... 54 3e-06 tr|Q1KUT6|Q1KUT6_9ROSI Putative uncharacterized protein OS=Cleom... 54 4e-06 tr|A7P2J6|A7P2J6_VITVI Chromosome chr1 scaffold_5, whole genome ... 54 4e-06 tr|A7NVM6|A7NVM6_VITVI Chromosome chr18 scaffold_1, whole genome... 54 4e-06 tr|A5BML2|A5BML2_VITVI Putative uncharacterized protein OS=Vitis... 54 4e-06 tr|A5AY99|A5AY99_VITVI Putative uncharacterized protein OS=Vitis... 54 4e-06 tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subs... 53 7e-06 tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza... 53 7e-06 tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza... 53 7e-06 tr|A7Q5S4|A7Q5S4_VITVI Chromosome chr14 scaffold_54, whole genom... 53 9e-06 tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea m... 52 1e-05 tr|B4FIA1|B4FIA1_MAIZE Putative uncharacterized protein OS=Zea m... 52 2e-05 tr|A9TDA2|A9TDA2_PHYPA Predicted protein OS=Physcomitrella paten... 52 2e-05 tr|Q5W963|Q5W963_PHYPA PPR1106-17 OS=Physcomitrella patens PE=2 ... 52 2e-05
>tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 155
Score = 66.6 bits (161), Expect = 6e-10 Identities = 26/75 (34%), Positives = 47/75 (62%) Frame = +3
Query: 3 WGEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVA 182 +G V+L + CF+ + +D Y LM +Y+++G+W++ + ++E+R A WK P A Sbjct: 11 YGHVELGRRCFNQVVPIDPYHAGAYVLMSGIYSDSGLWEEALKIDELRQYACAWKKPAKA 70
Query: 183 FVEVGSKIHGFTVGD 227 ++EV K+H F VG+ Sbjct: 71 WIEVDKKVHEFVVGE 85
>tr|B3U1U5|B3U1U5_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 143
Score = 59.7 bits (143), Expect = 7e-08 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = +3
Query: 9 EVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAFV 188 EV L + CFD + + + M +Y +A MW+ + E+R +A WK P A++ Sbjct: 1 EVQLGRQCFDMIIQSEPQNAAAFVYMSNIYNDAHMWEDAREIEELRKAACAWKKPAKAWI 60
Query: 189 EVGSKIHGFTVG 224 EV SK+H F VG Sbjct: 61 EVNSKVHEFVVG 72
>tr|A7PAH3|A7PAH3_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038113001 PE=4 SV=1 Length = 778
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/74 (33%), Positives = 44/74 (59%) Frame = +3
Query: 6 GEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAF 185 G V++A+ ++ L+ + Y L+ +YANAGMW++ + +M L K PG ++ Sbjct: 662 GNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSW 721
Query: 186 VEVGSKIHGFTVGD 227 +E+ S++H F VGD Sbjct: 722 IEIKSEVHAFLVGD 735
>tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035978 PE=4 SV=1 Length = 814
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/74 (33%), Positives = 44/74 (59%) Frame = +3
Query: 6 GEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAF 185 G V++A+ ++ L+ + Y L+ +YANAGMW++ + +M L K PG ++ Sbjct: 698 GNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSW 757
Query: 186 VEVGSKIHGFTVGD 227 +E+ S++H F VGD Sbjct: 758 IEIKSEVHAFLVGD 771
>tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 155
Score = 56.6 bits (135), Expect = 6e-07 Identities = 20/75 (26%), Positives = 42/75 (56%) Frame = +3
Query: 3 WGEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVA 182 +G +++ + CF + +D+ + Y LM +Y++ MW+ + + R +WK P Sbjct: 11 FGNLEMGRRCFQRILHMDSYNASAYMLMSSIYSDCNMWEHAKKLEDNRQHLGVWKKPAKT 70
Query: 183 FVEVGSKIHGFTVGD 227 ++EV +++H F +GD Sbjct: 71 WIEVNNQVHEFVIGD 85
>tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 370
Score = 56.6 bits (135), Expect = 6e-07 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = +3
Query: 6 GEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAF 185 G ++LA+ + L L P Y L+ +YA AG WD V +M ++ K PG ++ Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240
Query: 186 VEVGSKIHGFTVGD 227 +EV +K+H F VGD Sbjct: 241 IEVQNKVHPFIVGD 254
>tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015527001 PE=4 SV=1 Length = 637
Score = 56.6 bits (135), Expect = 6e-07 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = +3
Query: 3 WGEVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVA 182 +G V+L K + L +LD S+ Y ++ +Y+ AG+W V + L + PG + Sbjct: 447 YGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCS 506
Query: 183 FVEVGSKIHGFTVGD 227 F+E G+KIH F VGD Sbjct: 507 FIEHGNKIHRFVVGD 521
>tr|A5C1S9|A5C1S9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014227 PE=4 SV=1 Length = 1309
Score = 56.6 bits (135), Expect = 6e-07 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +3
Query: 9 EVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAFV 188 +V LA+ +L L P Y L+ +YANAG W+ + ++ S L K+PG ++ Sbjct: 1121 DVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWI 1180
Query: 189 EVGSKIHGFTVGD 227 EV +K H F+VGD Sbjct: 1181 EVDNKSHQFSVGD 1193
Score = 55.8 bits (133), Expect = 1e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +3
Query: 9 EVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAFV 188 +V LA+ +L L + P Y L+ +YANAG W+ + ++ S L K PG ++ Sbjct: 445 DVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWI 504
Query: 189 EVGSKIHGFTVGD 227 EV +K H F+VGD Sbjct: 505 EVDNKSHQFSVGD 517
>tr|Q94LP5|Q94LP5_ORYSJ Os10g0558600 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0010C11.18 PE=4 SV=1 Length = 905
Score = 56.2 bits (134), Expect = 8e-07 Identities = 25/73 (34%), Positives = 42/73 (57%) Frame = +3
Query: 9 EVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAFV 188 +V++A++ N+ LD + ++Y L+ VYA +G W + L K PG +++ Sbjct: 779 DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWI 838
Query: 189 EVGSKIHGFTVGD 227 EV S++HGF VGD Sbjct: 839 EVQSEMHGFLVGD 851
>tr|Q8SB86|Q8SB86_ORYSA Putative pentatricopeptide repeat domain containing protein OS=Oryza sativa GN=OSJNBa0042H09.29 PE=4 SV=1 Length = 391
Score = 56.2 bits (134), Expect = 8e-07 Identities = 25/73 (34%), Positives = 42/73 (57%) Frame = +3
Query: 9 EVDLAKVCFDNLRALDASEPTIYALMLEVYANAGMWDQWIAVNEMRSSAALWKVPGVAFV 188 +V++A++ N+ LD + ++Y L+ VYA +G W + L K PG +++ Sbjct: 265 DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWI 324
Query: 189 EVGSKIHGFTVGD 227 EV S++HGF VGD Sbjct: 325 EVQSEMHGFLVGD 337
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