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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915382
Clone id YMU001_000070_H01
Library
Length 210
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000070_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGCAGCTAATGAATCTAGTGAAGCACCCTGGGCTGGGTACCTTGGTTACCACCTTCGAT
GAGACGGTGTATGCAGATGATGATGCTGAAGACATTGACATCAATAGTGAGCTAGAAGCG
ACGGCTGCGGCCAAATGCATCTTTAAGAATGTGGCCCAGCCAGGCTCGGGGTATGATTCT
ATGTCTTGCCCCTTCATGAGTATCTTAGTA
■■Homology search results ■■ -
sp_hit_id Q9LYG9
Definition sp|Q9LYG9|Y5208_ARATH Uncharacterized protein At5g12080 OS=Arabidopsis thaliana
Align length 57
Score (bit) 49.3
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915382|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_H01.
         (210 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LYG9|Y5208_ARATH Uncharacterized protein At5g12080 OS=Arabi...    49   6e-06
sp|Q9SYM1|Y1861_ARATH Uncharacterized mscS family protein At1g78...    42   0.001
sp|P78847|NU186_SCHPO Nucleoporin nup186 OS=Schizosaccharomyces ...    29   8.3  
sp|O54910|IKBE_MOUSE NF-kappa-B inhibitor epsilon OS=Mus musculu...    29   8.3  

>sp|Q9LYG9|Y5208_ARATH Uncharacterized protein At5g12080
           OS=Arabidopsis thaliana GN=At5g12080 PE=1 SV=1
          Length = 734

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 7   LMNLVKHPGLGTLVTTFDETVYADDDAE-DIDINSELEATAAAKCIFKNVAQPGSGY 174
           LM  V+  GL T+  T DET Y +   + D +I SE+EA AAA  +F+NVAQP   Y
Sbjct: 393 LMEAVRTSGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNY 449


>sp|Q9SYM1|Y1861_ARATH Uncharacterized mscS family protein At1g78610
           OS=Arabidopsis thaliana GN=At1g78610 PE=1 SV=1
          Length = 856

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGY 174
           K+LMN++++  L TL     +    DD    I   SE EA  AA+ IF NVA+PGS +
Sbjct: 493 KRLMNIIRNGSLTTLDEQLQDPSLDDDKGNQI--RSEFEAKLAARKIFHNVAKPGSKF 548


>sp|P78847|NU186_SCHPO Nucleoporin nup186 OS=Schizosaccharomyces
           pombe GN=nup186 PE=2 SV=2
          Length = 1647

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = +1

Query: 16  LVKHPGLGTLVTTFDETVYAD---------DDAEDIDINSELEATAAAK-CIFKNV 153
           L +HP +  L   + E+VY+          D  ED+ +   +  T +A  CI +NV
Sbjct: 820 LTRHPAISLLEALYTESVYSGLFDLVEYGFDQLEDVSVPKTIVITVSASLCILRNV 875


>sp|O54910|IKBE_MOUSE NF-kappa-B inhibitor epsilon OS=Mus musculus
           GN=Nfkbie PE=2 SV=2
          Length = 364

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 79  DDAEDIDINSELEATAAAKCIFKNVAQPGSGYDSMSCP 192
           D+A+D   +S +E+  + + + +  A PGSG     CP
Sbjct: 9   DEADDSQCDSGIESLRSLRSLPEPTAAPGSGSSQSGCP 46
tr_hit_id Q9LPG3
Definition tr|Q9LPG3|Q9LPG3_ARATH T3F20.21 protein OS=Arabidopsis thaliana
Align length 69
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915382|Adiantum capillus-veneris mRNA, clone:
YMU001_000070_H01.
         (210 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LPG3|Q9LPG3_ARATH T3F20.21 protein OS=Arabidopsis thaliana ...    49   2e-04
tr|Q9LH74|Q9LH74_ARATH Gb|AAD30575.1 OS=Arabidopsis thaliana PE=...    45   0.001
tr|Q1ZY11|Q1ZY11_BETVU Fgenesh protein 101 OS=Beta vulgaris PE=4...    43   0.007
tr|Q6ET90|Q6ET90_ORYSJ Os02g0668000 protein OS=Oryza sativa subs...    43   0.009
tr|Q1H8R3|Q1H8R3_CHERU Putative mechanosensitive ion channel (Fr...    43   0.009
tr|A7P4R9|A7P4R9_VITVI Chromosome chr4 scaffold_6, whole genome ...    43   0.009
tr|A5BQH6|A5BQH6_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A2X846|A2X846_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q7XJM0|Q7XJM0_ARATH At2g17000 protein OS=Arabidopsis thaliana...    42   0.016
tr|Q7XJL9|Q7XJL9_ARATH At2g17010 protein OS=Arabidopsis thaliana...    41   0.027
tr|Q6ET89|Q6ET89_ORYSJ Mechanosensitive ion channel domain-conta...    40   0.045
tr|Q2L3W4|Q2L3W4_WHEAT Mechanosensitive ion channel (Fragment) O...    40   0.045
tr|Q2L3D9|Q2L3D9_BRASY Mechanosensitive ion channel (Fragment) O...    40   0.045
tr|Q69NN6|Q69NN6_ORYSJ Os06g0205600 protein OS=Oryza sativa subs...    40   0.077
tr|A9RD55|A9RD55_PHYPA MscS-Like mechanosensitive ion channel MS...    40   0.077
tr|A3B9G5|A3B9G5_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.077
tr|A2YAH1|A2YAH1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.077
tr|Q84M97|Q84M97_ARATH At5g19520 (Putative uncharacterized prote...    39   0.13 
tr|Q8W0U2|Q8W0U2_SORBI Putative uncharacterized protein SB35P03....    38   0.23 
tr|Q6QP48|Q6QP48_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|Q7XSQ3|Q7XSQ3_ORYSJ OSJNBa0084K11.11 protein OS=Oryza sativa ...    37   0.38 
tr|Q0JB23|Q0JB23_ORYSJ Os04g0561000 protein OS=Oryza sativa subs...    37   0.38 
tr|B8ASX5|B8ASX5_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|A7QN75|A7QN75_VITVI Chromosome undetermined scaffold_131, who...    37   0.38 
tr|A5CBH1|A5CBH1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.38 
tr|Q6QP53|Q6QP53_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.86 
tr|A9S7E3|A9S7E3_PHYPA MscS-Like mechanosensitive ion channel MS...    35   1.5  
tr|B4LER8|B4LER8_DROVI GJ11707 OS=Drosophila virilis GN=GJ11707 ...    33   7.3  

>tr|Q9LPG3|Q9LPG3_ARATH T3F20.21 protein OS=Arabidopsis thaliana
           GN=At1g53470 PE=1 SV=1
          Length = 881

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 31/69 (44%), Positives = 40/69 (57%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGYDS 180
           K+LMN++K   L TL     +T   +DD +   I SE EA  AA+ IF+NVA+PGS Y  
Sbjct: 520 KKLMNVIKKGTLSTLDEQIQDTTTQEDD-KATQIRSEFEAKLAARKIFQNVAEPGSRYIY 578

Query: 181 MSCPFMSIL 207
           M   FM  L
Sbjct: 579 ME-DFMRFL 586


>tr|Q9LH74|Q9LH74_ARATH Gb|AAD30575.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 881

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 25/58 (43%), Positives = 33/58 (56%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGY 174
           K+LMN++    + TL     +T   D+DA    I SE EA  AA+ IF NV +PGS Y
Sbjct: 520 KRLMNIILKGAISTLDQNMQDTTQEDEDA--THIRSEYEAKCAARKIFHNVTEPGSRY 575


>tr|Q1ZY11|Q1ZY11_BETVU Fgenesh protein 101 OS=Beta vulgaris PE=4
           SV=1
          Length = 1011

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGYDS 180
           K+L+ +V+H  L TL    + T   D+ A  I   SE+EA AAA+ IF+NVA+P S Y  
Sbjct: 602 KRLIRIVRHGFLTTLDEHIENTNGEDESATQI--RSEVEAKAAARKIFRNVAKPRSKYIY 659

Query: 181 MS 186
           +S
Sbjct: 660 LS 661


>tr|Q6ET90|Q6ET90_ORYSJ Os02g0668000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1725_H08.12-1 PE=2 SV=1
          Length = 974

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVY---ADDDAEDIDINSELEATAAAKCIFKNVAQPGSG 171
           K+LM +V+    GTL TT DE +     + D     I SE EA  AAK IF NVA+PGS 
Sbjct: 619 KRLMRIVR---FGTL-TTMDEQIQQATGEGDESATQIRSEYEAKIAAKKIFHNVAKPGSK 674

Query: 172 YDSMS 186
           Y  +S
Sbjct: 675 YIYLS 679


>tr|Q1H8R3|Q1H8R3_CHERU Putative mechanosensitive ion channel
           (Fragment) OS=Chenopodium rubrum GN=mch PE=2 SV=1
          Length = 216

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 25/58 (43%), Positives = 34/58 (58%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGY 174
           K+LMN ++  GL T+  T DE   A+ +     I SE EA   AK IF+NVA+ G+ Y
Sbjct: 71  KRLMNYIRSSGLSTISKTVDEFGKAESE-----ITSEWEARTTAKRIFRNVAKRGAKY 123


>tr|A7P4R9|A7P4R9_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032255001
           PE=4 SV=1
          Length = 760

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 22/58 (37%), Positives = 37/58 (63%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGY 174
           K+L++++   GL T+  T  E++  + +  D +I +E+EA AA+  IF+NV QPG  Y
Sbjct: 407 KELVDVILSSGLPTISDTL-ESIAKEGEQADKEITNEMEAIAASYHIFRNVCQPGFSY 463


>tr|A5BQH6|A5BQH6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037531 PE=4 SV=1
          Length = 760

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 22/58 (37%), Positives = 37/58 (63%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGSGY 174
           K+L++++   GL T+  T  E++  + +  D +I +E+EA AA+  IF+NV QPG  Y
Sbjct: 407 KELVDVILSSGLPTISDTL-ESIAKEGEQADKEITNEMEAIAASYHIFRNVCQPGFSY 463


>tr|A2X846|A2X846_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08401 PE=4 SV=1
          Length = 972

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVY---ADDDAEDIDINSELEATAAAKCIFKNVAQPGSG 171
           K+LM +V+    GTL TT DE +     + D     I SE EA  AAK IF NVA+PGS 
Sbjct: 617 KRLMRIVR---FGTL-TTMDEQIQQATGEGDESATQIRSEYEAKIAAKKIFHNVAKPGSK 672

Query: 172 YDSMS 186
           Y  +S
Sbjct: 673 YIYLS 677


>tr|Q7XJM0|Q7XJM0_ARATH At2g17000 protein OS=Arabidopsis thaliana
           GN=At2g17000 PE=2 SV=1
          Length = 849

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYAD--DDAEDIDINSELEATAAAKCIFKNVAQPGS 168
           K+LM +V++  L TL    DE    +  +D     I SE EA AAA+ IFKNVAQPG+
Sbjct: 484 KRLMKIVRNVSLSTL----DEQALQNTCEDESTRQIRSEKEAKAAARKIFKNVAQPGT 537


>tr|Q7XJL9|Q7XJL9_ARATH At2g17010 protein OS=Arabidopsis thaliana
           GN=At2g17010 PE=4 SV=1
          Length = 698

 Score = 41.2 bits (95), Expect = 0.027
 Identities = 25/56 (44%), Positives = 33/56 (58%)
 Frame = +1

Query: 1   KQLMNLVKHPGLGTLVTTFDETVYADDDAEDIDINSELEATAAAKCIFKNVAQPGS 168
           K+LM +V++  L TL     E+ Y D+    I   SE EA AAA+ IFKNV Q G+
Sbjct: 422 KRLMKIVRNVSLTTLDEQMLESTYEDESTRQI--RSEKEAKAAARKIFKNVEQRGA 475