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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915392
Clone id YMU001_000071_A06
Library
Length 367
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAAAAGAGTGAGCAGCCCCCTATACACTTATGCTATGTATAAGGTATACAAGTCAGTG
GGCGCCCAGACTCTGGGCGGTCGGGCAAGGCACAGACGCCTATACCCCAACACTGCCCAA
GCAATACTCTTTGTAATCAATGAAAAGGTGTCATTCTAAGGGCTTCTGTGTGAGTACATG
CGTTCGTGATGTATTTGTAAAACTTGTAATAACTAATGCGGATTTTTCTCCCATTAATGA
ATACGGTGTTTTGAATCTCGTCTCTGAGCATACTTGTTCATTTTCAATTTATTCAAGATT
TTGATTGAAATGTGCAATTTCATTGATTTGGAACGCAAATGTATCTTTTGATGCTTTGTC
GTATGAT
■■Homology search results ■■ -
sp_hit_id Q0TUH0
Definition sp|Q0TUH0|UNG_CLOP1 Uracil-DNA glycosylase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Align length 53
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915392|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_A06.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0TUH0|UNG_CLOP1 Uracil-DNA glycosylase OS=Clostridium perfri...    35   0.15 
sp|Q0SWB8|UNG_CLOPS Uracil-DNA glycosylase OS=Clostridium perfri...    34   0.20 
sp|Q8XNR7|UNG_CLOPE Uracil-DNA glycosylase OS=Clostridium perfri...    34   0.20 
sp|A6M317|UNG_CLOB8 Uracil-DNA glycosylase OS=Clostridium beijer...    31   1.7  
sp|Q3AQX4|UVRC_CHLCH UvrABC system protein C OS=Chlorobium chlor...    30   2.9  
sp|Q182G9|UNG_CLOD6 Uracil-DNA glycosylase OS=Clostridium diffic...    30   3.7  
sp|P41474|Y084_NPVAC Uncharacterized 21.7 kDa protein in GP41-PN...    29   8.3  

>sp|Q0TUH0|UNG_CLOP1 Uracil-DNA glycosylase OS=Clostridium
           perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
           GN=ung PE=3 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>sp|Q0SWB8|UNG_CLOPS Uracil-DNA glycosylase OS=Clostridium
           perfringens (strain SM101 / Type A) GN=ung PE=3 SV=1
          Length = 225

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I  YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLIDEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>sp|Q8XNR7|UNG_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens GN=ung PE=3 SV=1
          Length = 225

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFKKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>sp|A6M317|UNG_CLOB8 Uracil-DNA glycosylase OS=Clostridium
           beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ung
           PE=3 SV=1
          Length = 225

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 268 LRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           L+ E Q   +IN RK  I+ Y       N      AL  TP++ ++ V+LGQ
Sbjct: 13  LQSEFQKDYYINLRKFLINEYNSKTIYPNMYDLFNALHFTPYNKVKVVILGQ 64


>sp|Q3AQX4|UVRC_CHLCH UvrABC system protein C OS=Chlorobium
           chlorochromatii (strain CaD3) GN=uvrC PE=3 SV=1
          Length = 629

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -1

Query: 124 LLGQCWGIGVCAL---PDRPESGRPLTCIPYT*HKCIGGC 14
           L+G  + +  C L   PD   SG+   C+ Y  HKC G C
Sbjct: 155 LIGSIFPVRSCKLRLTPDAIASGKYKVCLDYHIHKCKGAC 194


>sp|Q182G9|UNG_CLOD6 Uracil-DNA glycosylase OS=Clostridium difficile
           (strain 630) GN=ung PE=3 SV=1
          Length = 224

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L++E +   ++N RK  I  YK  +   N     EAL+ T +   + ++LGQ
Sbjct: 11  LLKEEFEKDYYLNLRKFLIEEYKTRQIFPNMHNIYEALKHTSYKDTKVLILGQ 63


>sp|P41474|Y084_NPVAC Uncharacterized 21.7 kDa protein in GP41-PNK
           intergenic region OS=Autographa californica nuclear
           polyhedrosis virus PE=4 SV=1
          Length = 188

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 252 KTPYSLMGEKSALVITSFTNTSRTHVLTQKPLE*HLFIDYKEYCL 118
           K P   +G      +  F N  R HV+ +K L+ +L+IDY  +C+
Sbjct: 135 KVPQRSVGYFMNSKLERFANCDRGHVVEEKQLQSNLYIDY--FCM 177
tr_hit_id B1V2K3
Definition tr|B1V2K3|B1V2K3_CLOPE Uracil-DNA glycosylase OS=Clostridium perfringens D str. JGS1721
Align length 53
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915392|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_A06.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1V2K3|B1V2K3_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|B1RRN2|B1RRN2_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|B1RHD9|B1RHD9_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|B1R8C1|B1R8C1_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|B1BUK2|B1BUK2_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|B1BHB1|B1BHB1_CLOPE Uracil-DNA glycosylase OS=Clostridium per...    35   2.4  
tr|Q1E2H1|Q1E2H1_COCIM Putative uncharacterized protein OS=Cocci...    33   7.1  

>tr|B1V2K3|B1V2K3_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens D str. JGS1721 GN=ung PE=4 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|B1RRN2|B1RRN2_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens NCTC 8239 GN=ung PE=4 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|B1RHD9|B1RHD9_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens CPE str. F4969 GN=ung PE=4 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|B1R8C1|B1R8C1_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens B str. ATCC 3626 GN=ung PE=4 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|B1BUK2|B1BUK2_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens E str. JGS1987 GN=ung PE=3 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|B1BHB1|B1BHB1_CLOPE Uracil-DNA glycosylase OS=Clostridium
           perfringens C str. JGS1495 GN=ung PE=3 SV=1
          Length = 225

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 271 MLRDEIQNTVFINGRKIRISYYKFYKYITNACTHTEALRMTPFH*LQRVLLGQ 113
           +L+DE +   ++N RK  I+ YK  K   +      AL+ TP+  ++ V+LGQ
Sbjct: 12  LLKDEFEKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQ 64


>tr|Q1E2H1|Q1E2H1_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_03242 PE=4 SV=1
          Length = 1055

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  RPDSGRSGKAQTPIPQHCPSNTLCNQ*KGVILRAS 167
           R   GR   A T +P+H  SNT C+  KG I+  S
Sbjct: 173 RASGGRKVAASTSVPEHTSSNTPCDDGKGTIIEDS 207