BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915400|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_B04.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34340|COL90_CAEEL Putative cuticle collagen 90 OS=Caenorhabd...    30   3.4  
sp|P81536|XYNA_PAEVA Endo-1,4-beta-xylanase OS=Paecilomyces vari...    29   7.5  
sp|Q5HUF2|TGT_CAMJR Queuine tRNA-ribosyltransferase OS=Campyloba...    29   9.8  
sp|A1VZZ8|TGT_CAMJJ Queuine tRNA-ribosyltransferase OS=Campyloba...    29   9.8  

>sp|P34340|COL90_CAEEL Putative cuticle collagen 90
           OS=Caenorhabditis elegans GN=col-90 PE=2 SV=1
          Length = 305

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 297 ETMSIFPSIFNTSRPI*AILCKCDSSKRG 383
           ET ++ PSIF + R +   +C CDS+ +G
Sbjct: 64  ETENVMPSIFRSKRFVYPGMCNCDSNSQG 92


>sp|P81536|XYNA_PAEVA Endo-1,4-beta-xylanase OS=Paecilomyces
           variotii PE=1 SV=1
          Length = 194

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 419 GKAVLSVPGWSSSPLAAVTLAEN--SSNRSGGVED 321
           G + LSV GW+ +PL    + EN  SSN S G  D
Sbjct: 70  GTSYLSVYGWTRNPLVEYYIVENFGSSNPSSGSTD 104


>sp|Q5HUF2|TGT_CAMJR Queuine tRNA-ribosyltransferase
           OS=Campylobacter jejuni (strain RM1221) GN=tgt PE=3 SV=1
          Length = 373

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 420 RKGRFISTWVVIIPACCCHTCR 355
           +K  FI+   VI P C C+TCR
Sbjct: 293 KKAEFINDHEVIDPTCSCYTCR 314


>sp|A1VZZ8|TGT_CAMJJ Queuine tRNA-ribosyltransferase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=tgt PE=3 SV=1
          Length = 373

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 420 RKGRFISTWVVIIPACCCHTCR 355
           +K  FI+    I PAC C+TCR
Sbjct: 293 KKAEFINDHEAIDPACSCYTCR 314

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915400|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_B04.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******