NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915404
Clone id YMU001_000071_B09
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCAGGAATTTTTTTTTTTGTAACAGCAGAAAAGAGCATATCTATATTCAT
CCAAATCTGATATAATTTCGACAAAGAAACCGGGGGCTCAGCAATCTGGTTATGAACAAG
AGGCAACTAACTACCCAGCCCATTCAACAACTCCTCTCACCAGTTCCAGAAAACATTGGA
TGCGCACTTGTACTTCTCCTTGCCTTCACACTCTATCTTCAGATCATCGGTGAGGAAAGG
CACATTCGTTTTCTTAGCAAGATCTTGGCAGCCGGTAAAATTCTGGGGAAACTTGCAAGT
TCCAAAAGTGACGGTATAGGCTCGCGCCGTGTTCGCATAGCTGGTGGCGAGCCGCTTGTG
GTCGTTCAGCTCCTTGTTGGCGGCTGATTTAGCGAGAAGATCTTCGACGAGGCCGGCCTT
GGCCTTGTCAGCAGAGGCGAACTGCGCAAGGTCACCATCAAGCAGCAGCGCCGCTGCGAG
CTTCATCGCATCTCTGCGACCCGCGATCGGCCTGGCCTCTTGGC
■■Homology search results ■■ -
sp_hit_id P31093
Definition sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare
Align length 90
Score (bit) 134.0
E-value 2.0e-31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915404|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_B09.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, ch...   134   2e-31
sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, ch...   131   1e-30
sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, ch...   129   7e-30
sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, ch...   111   2e-24
sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3 OS=...    31   3.6  
sp|P42842|YN53_YEAST Uncharacterized protein YNL313C OS=Saccharo...    30   6.1  
sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 ...    30   6.1  
sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS...    30   8.0  

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N,
           chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1
          Length = 145

 Score =  134 bits (337), Expect = 2e-31
 Identities = 64/90 (71%), Positives = 73/90 (81%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           ASA  A+A + ++ L KS  NKELND KR ATS AN ARAYTV FG+CKFP NFTGCQDL
Sbjct: 53  ASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDL 112

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF+TDDL+IECEGKEK+KC SNVF
Sbjct: 113 AKQKKVPFITDDLEIECEGKEKFKCGSNVF 142


>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N,
           chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1
          Length = 112

 Score =  131 bits (330), Expect = 1e-30
 Identities = 62/85 (72%), Positives = 72/85 (84%)
 Frame = -3

Query: 395 AKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLAKKTN 216
           AKA + ++ L KS ANKELND KRLATS AN ARAYTV FG+C+FP NFTGCQDLAK+  
Sbjct: 25  AKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKK 84

Query: 215 VPFLTDDLKIECEGKEKYKCASNVF 141
           VPF++DDL+IECEGKEK+KC SNVF
Sbjct: 85  VPFISDDLEIECEGKEKFKCGSNVF 109


>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N,
           chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
          Length = 171

 Score =  129 bits (324), Expect = 7e-30
 Identities = 58/90 (64%), Positives = 74/90 (82%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A +  A AG++++ L +S  NKELND KRLATS AN ARA+TV FG+CKFP+NFTGCQDL
Sbjct: 79  AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDL 138

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF+++D+ +ECEGK+KYKC SNVF
Sbjct: 139 AKQKKVPFISEDIALECEGKDKYKCGSNVF 168


>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N,
           chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1
          Length = 139

 Score =  111 bits (278), Expect = 2e-24
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A A  A AG+VEDLLAKSAANK LN+ KRLATSYAN AR+ TV  GTC+FP+NF GC++L
Sbjct: 46  ALAPAANAGVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEEL 105

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCAS 150
           A    V ++ +DLKIECEGK+   C S
Sbjct: 106 AFNKGVKYIAEDLKIECEGKDAKSCGS 132


>sp|Q9U7D5|ACM3_CAEEL Muscarinic acetylcholine receptor gar-3
           OS=Caenorhabditis elegans GN=gar-3 PE=1 SV=2
          Length = 611

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +2

Query: 29  SSKSDIIST---KKPGAQQSGYEQEATNYPAHSTTPLTSSR----KHWMRTCT 166
           S K D+ ST   K  G+ +    Q+   Y   S TP TSSR    K W+R CT
Sbjct: 301 SMKRDVSSTSIIKSSGSMRKKNNQDG--YVEDSVTPCTSSRNSKRKSWLRNCT 351


>sp|P42842|YN53_YEAST Uncharacterized protein YNL313C
           OS=Saccharomyces cerevisiae GN=YNL313C PE=1 SV=1
          Length = 904

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 SAPCWRLI*REDLRRGRPW 394
           SA CWRL+ R +L R RPW
Sbjct: 791 SARCWRLVARVELWRKRPW 809


>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4
           OS=Mus musculus GN=Smad4 PE=2 SV=1
          Length = 551

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 44  IISTKKPGAQQSGYEQEATNYPAHSTTPLTSSR 142
           I S  +PG QQ+G+  + + Y  +STT  T SR
Sbjct: 239 IASGPQPGQQQNGFTAQPSTYHHNSTTTWTGSR 271


>sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4
           OS=Rattus norvegicus GN=Smad4 PE=2 SV=1
          Length = 552

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 44  IISTKKPGAQQSGYEQEATNYPAHSTTPLTSSR 142
           I S  +PG QQ+G+  +   Y  +STT  T SR
Sbjct: 240 IASGPQPGQQQNGFTAQPATYHHNSTTTWTGSR 272
tr_hit_id A9NKZ3
Definition tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 90
Score (bit) 141.0
E-value 1.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915404|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_B09.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea...   141   1e-32
tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome...   141   2e-32
tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Popul...   140   2e-32
tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Popul...   140   4e-32
tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subs...   137   2e-31
tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus vulg...   137   4e-31
tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N O...   136   6e-31
tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza...   135   8e-31
tr|B8LK70|B8LK70_PICSI Putative uncharacterized protein OS=Picea...   135   1e-30
tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N O...   133   5e-30
tr|Q6XGX6|Q6XGX6_VITVI Putative photosystem I reaction center su...   132   1e-29
tr|Q9AXJ2|Q9AXJ2_CHLRE PsaN OS=Chlamydomonas reinhardtii GN=psaN...   108   1e-22
tr|Q1WLU5|Q1WLU5_CHLIN Chloroplast photosystem I subunit N OS=Ch...   107   2e-22
tr|A8I835|A8I835_CHLRE Photosystem I reaction center subunit N O...   107   4e-22
tr|A4RYB0|A4RYB0_OSTLU PsaN, PSI-N, photosystem I polypeptide OS...    99   1e-19
tr|Q017X3|Q017X3_OSTTA PSAN_VOLCA Photosystem I reaction centre ...    86   9e-16
tr|Q7M1U9|Q7M1U9_ORYSA Photosystem I 9K protein (Fragment) OS=Or...    69   1e-10
tr|A3CFM0|A3CFM0_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B8YAB7|B8YAB7_9POAL Chloroplast photosystem I subunit N (Frag...    42   0.012
tr|Q6K310|Q6K310_ORYSJ Putative uncharacterized protein OSJNBb00...    37   0.52 
tr|B8DKN4|B8DKN4_DESVM PGAP1 family protein OS=Desulfovibrio vul...    36   0.88 
tr|A3LW97|A3LW97_PICST Putative uncharacterized protein OS=Pichi...    35   1.5  
tr|A9BKZ2|A9BKZ2_9CRYP Putative uncharacterized protein OS=Crypt...    35   2.0  
tr|B6LDH1|B6LDH1_BRAFL Putative uncharacterized protein OS=Branc...    34   4.3  
tr|B6L056|B6L056_BRAFL Putative uncharacterized protein (Fragmen...    34   4.3  
tr|A1TRF5|A1TRF5_ACIAC Sensor protein OS=Acidovorax avenae subsp...    33   7.5  

>tr|A9NKZ3|A9NKZ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score =  141 bits (356), Expect = 1e-32
 Identities = 68/90 (75%), Positives = 76/90 (84%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A++  A AGLVEDLL KSAANK LND KRLATS AN ARAYTV FGTC+ P NFTGCQDL
Sbjct: 81  ATSGSANAGLVEDLLVKSAANKALNDKKRLATSGANIARAYTVQFGTCQVPYNFTGCQDL 140

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK  NVPFL++D+K+ECEGK+KYKC SNVF
Sbjct: 141 AKIKNVPFLSEDMKLECEGKDKYKCGSNVF 170


>tr|A7QB42|A7QB42_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034797001
           PE=4 SV=1
          Length = 173

 Score =  141 bits (355), Expect = 2e-32
 Identities = 65/90 (72%), Positives = 77/90 (85%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A++  A AG+++D L KS ANKELND KRLATS AN ARAYTV FGTCKFP+NFTGCQDL
Sbjct: 81  AASSSANAGVIDDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDL 140

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AKK  VPFL++DL++ECEG++KYKC SNVF
Sbjct: 141 AKKKKVPFLSEDLELECEGRDKYKCGSNVF 170


>tr|A9PFK1|A9PFK1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 172

 Score =  140 bits (354), Expect = 2e-32
 Identities = 66/90 (73%), Positives = 76/90 (84%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A+A  A AG++ED L KS ANKELND KRLATS AN ARAYTV FGTCKFP+NFTGCQDL
Sbjct: 80  AAAASANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDL 139

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF+++DL +ECEGK+KYKC SNVF
Sbjct: 140 AKQKKVPFISEDLALECEGKDKYKCGSNVF 169


>tr|A9PIQ3|A9PIQ3_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 172

 Score =  140 bits (352), Expect = 4e-32
 Identities = 65/90 (72%), Positives = 76/90 (84%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A+A  A AG++E+ L KS ANKELND KRLATS AN ARA+TV FGTCKFP+NFTGCQDL
Sbjct: 80  AAASSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAFTVQFGTCKFPENFTGCQDL 139

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF++DDL +ECEGK+KYKC SNVF
Sbjct: 140 AKQKKVPFISDDLALECEGKDKYKCGSNVF 169


>tr|Q2QWN3|Q2QWN3_ORYSJ Os12g0189400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0189400 PE=2 SV=1
          Length = 149

 Score =  137 bits (346), Expect = 2e-31
 Identities = 65/89 (73%), Positives = 76/89 (85%)
 Frame = -3

Query: 407 SADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLA 228
           +A +AKAG+ ++ L KS ANKELND KRLATS AN ARAYTV FG+C+FP NFTGCQDLA
Sbjct: 58  AAGQAKAGVFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLA 117

Query: 227 KKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           K+  VPF++DDL+IECEGKEKYKC SNVF
Sbjct: 118 KQKKVPFISDDLEIECEGKEKYKCGSNVF 146


>tr|Q84U30|Q84U30_PHAVU Photosystem I-N subunit OS=Phaseolus
           vulgaris GN=PSI-N PE=1 SV=1
          Length = 170

 Score =  137 bits (344), Expect = 4e-31
 Identities = 64/90 (71%), Positives = 74/90 (82%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           AS   A AG++E+ L KS  NKELND KRLAT+ AN ARAYTV FG+CKFP+NFTGCQDL
Sbjct: 78  ASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDL 137

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPFL+DDL +ECEGK+KYKC SNVF
Sbjct: 138 AKQKKVPFLSDDLDLECEGKDKYKCGSNVF 167


>tr|B6TXS5|B6TXS5_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  136 bits (342), Expect = 6e-31
 Identities = 64/89 (71%), Positives = 75/89 (84%)
 Frame = -3

Query: 407 SADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDLA 228
           +A  AKAG+ ++ L KS ANKELND KR+ATS AN ARAYTV FG+C+FP NFTGCQDLA
Sbjct: 54  TAGSAKAGVFDEYLEKSKANKELNDKKRMATSAANFARAYTVEFGSCQFPYNFTGCQDLA 113

Query: 227 KKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           K+  VPFL+DDL+IECEGKEK+KC SNVF
Sbjct: 114 KQKKVPFLSDDLEIECEGKEKFKCGSNVF 142


>tr|B8BNI3|B8BNI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37722 PE=4 SV=1
          Length = 144

 Score =  135 bits (341), Expect = 8e-31
 Identities = 64/90 (71%), Positives = 75/90 (83%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A   +A+AG+ ++ L KS ANKELND KRLATS AN ARAYTV FG+C+FP NFTGCQDL
Sbjct: 52  AGQGQARAGVFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDL 111

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF++DDL+IECEGKEKYKC SNVF
Sbjct: 112 AKQKKVPFISDDLEIECEGKEKYKCGSNVF 141


>tr|B8LK70|B8LK70_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 172

 Score =  135 bits (339), Expect = 1e-30
 Identities = 67/90 (74%), Positives = 75/90 (83%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A++  A AGLVEDLL KSAANK LND KRLATS AN ARAYTV FGTC+ P NFTGCQDL
Sbjct: 81  ATSGSANAGLVEDLLVKSAANKALNDKKRLATSGANIARAYTVQFGTCQVPYNFTGCQDL 140

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK  NVPFL++D+K+ECEGK+KY C SNVF
Sbjct: 141 AKIKNVPFLSEDMKLECEGKDKY-CGSNVF 169


>tr|B4FAC2|B4FAC2_MAIZE Photosystem I reaction center subunit N
           OS=Zea mays PE=2 SV=1
          Length = 145

 Score =  133 bits (334), Expect = 5e-30
 Identities = 63/90 (70%), Positives = 74/90 (82%)
 Frame = -3

Query: 410 ASADKAKAGLVEDLLAKSAANKELNDHKRLATSYANTARAYTVTFGTCKFPQNFTGCQDL 231
           A+   AKA + ++ L KS ANKELND KRLATS AN ARAYTV FG+C+FP NFTGCQDL
Sbjct: 53  ATTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDL 112

Query: 230 AKKTNVPFLTDDLKIECEGKEKYKCASNVF 141
           AK+  VPF++DDL+IECEGKEK+KC SNVF
Sbjct: 113 AKQKKVPFISDDLEIECEGKEKFKCGSNVF 142