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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915416
Clone id YMU001_000071_C10
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTTAGTGCCATCTAACTTCTCAATGTTGAACAAAGAGTTCTCTGATGATGAAGCCATCA
CTCGACAAGGAACAAAAGTGATAGATCCGCTCCACTAAAGAAGATGATAGAAAACCTGAA
ATTTTTTGGCAGAGTCTCCCCTGCAAAACTGACTTCTGAACCCAAAACAAATGTGTACAA
TGACTGAAATGCTGATCAAAATGGCTAAACCGGCAAGATAAAATCTCAAAGAACTGTCAC
TCTCAATGTCTTCAACTTTAAAAGAGTGTCTCTAACCAACTGACCACTATCGAACGCATA
CGCATAAAGATGACAGCAATGCCAACAATGGCGGGTCAGCAGATGCACACAAATACTGCA
CTAACCGCATAAACATACATCCTATGTCG
■■Homology search results ■■ -
sp_hit_id Q8N7U6
Definition sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens
Align length 63
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915416|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_C10.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B O...    31   2.2  
sp|Q050C7|UPPP_LEPBL Undecaprenyl-diphosphatase OS=Leptospira bo...    29   8.4  
sp|Q04SA1|UPPP_LEPBJ Undecaprenyl-diphosphatase OS=Leptospira bo...    29   8.4  
sp|Q6X5S4|CTL9_ECHCS C-type lectin 9 OS=Echis carinatus sochurek...    29   8.4  
sp|Q6X5S1|CTL5_ECHPL C-type lectin 5 OS=Echis pyramidum leakeyi ...    29   8.4  

>sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B
           OS=Homo sapiens GN=EFHB PE=2 SV=2
          Length = 831

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 236 QFFEILSCRFSHFDQHFSHCTHLFWVQKSVLQGRLCQKISGFLSSSLVERIYHFCSLSSD 57
           Q F+ L   F H+D+          + K  LQ   C + +  L   L+++++ +C + +D
Sbjct: 559 QKFDTLLAAFRHYDKKGDGM-----IDKDELQ-EACDQANLSLDDKLLDQLFDYCDVDND 612

Query: 56  GFI 48
           GFI
Sbjct: 613 GFI 615


>sp|Q050C7|UPPP_LEPBL Undecaprenyl-diphosphatase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain L550)
           GN=uppP PE=3 SV=1
          Length = 280

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 177 YTFVLGSEVSFAGETLPKNFRFSIIFFSGADLSLLFL 67
           + F+  S   F+GE+L  +  F I   SGA LS+LFL
Sbjct: 27  HLFLFSSFFPFSGESLEFDDLFDIFIQSGAILSVLFL 63


>sp|Q04SA1|UPPP_LEPBJ Undecaprenyl-diphosphatase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
           GN=uppP PE=3 SV=1
          Length = 280

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 177 YTFVLGSEVSFAGETLPKNFRFSIIFFSGADLSLLFL 67
           + F+  S   F+GE+L  +  F I   SGA LS+LFL
Sbjct: 27  HLFLFSSFFPFSGESLEFDDLFDIFIQSGAILSVLFL 63


>sp|Q6X5S4|CTL9_ECHCS C-type lectin 9 OS=Echis carinatus sochureki
           PE=2 SV=1
          Length = 146

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 240 LSMSSTLKECL*PTDHYRTHTHKDDSNANNGGSADAHKYCTNRIN 374
           LS+S T  ECL    HY  H ++          ADA K+C+ + N
Sbjct: 16  LSLSGTEAECLPDWFHYEGHCYRVFDEPKTW--ADAEKFCSEQAN 58


>sp|Q6X5S1|CTL5_ECHPL C-type lectin 5 OS=Echis pyramidum leakeyi
           PE=2 SV=1
          Length = 146

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 240 LSMSSTLKECL*PTDHYRTHTHKDDSNANNGGSADAHKYCTNRIN 374
           LS+S T  ECL    HY  H ++          ADA K+C+ + N
Sbjct: 16  LSLSGTEAECLPDWFHYEGHCYRVFDEPKTW--ADAEKFCSEQAN 58
tr_hit_id A6C372
Definition tr|A6C372|A6C372_9PLAN Putative uncharacterized protein OS=Planctomyces maris DSM 8797
Align length 45
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915416|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_C10.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6C372|A6C372_9PLAN Putative uncharacterized protein OS=Planc...    33   9.3  

>tr|A6C372|A6C372_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_10184 PE=4
           SV=1
          Length = 196

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 271 RHSFKVEDIESDSSLRFYLAGLAILISISVIVHICFGFRSQFCRG 137
           R + + E  E+D S R+        IS+S+I+  C G +S FC G
Sbjct: 22  RKALECEYSEADKSDRYQFILCVFAISVSIIILFCAGDKSGFCSG 66