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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915418
Clone id YMU001_000071_D01
Library
Length 387
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTTGACTGATCCCAGAATGATTTGAGAATGGGCCAAATGGATGACATCCACTGGCCCAA
AGCCAGTTAAGAACTGGACGTTCATGAATGTGAGAGGCCTTCTCATATGGTGCAACCAAA
CCTCCAAGAACAGATGCAAGTCCTGCCAGTATATGCCTCTGGGGAGATATTGGCTCCACT
TTTAATTTTTCTGTTTCAGAAACATAGCTCAAATCAATTGAGGCCTTTCCATGTTGCAAC
ACAAAAATGGAATCGTGGCTTGCCCACAACAAGCTTTCTCCATCCATCATCAGCTGAGGA
TCAACTTCTGCTAACGACAAAACAAACACTGGAATTACACGGGTACCGTAAGATACATAG
ACACCGTCTTCTTGAGGAATTTGCTTA
■■Homology search results ■■ -
sp_hit_id O67226
Definition sp|O67226|RGYR2_AQUAE Reverse gyrase 2 OS=Aquifex aeolicus
Align length 77
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915418|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D01.
         (387 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O67226|RGYR2_AQUAE Reverse gyrase 2 OS=Aquifex aeolicus GN=rg...    30   2.9  
sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein...    30   4.9  
sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcriptio...    30   4.9  
sp|Q8XTL6|XERC2_RALSO Tyrosine recombinase xerC 2 OS=Ralstonia s...    29   6.5  

>sp|O67226|RGYR2_AQUAE Reverse gyrase 2 OS=Aquifex aeolicus GN=rgy2
            PE=3 SV=2
          Length = 1159

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 41   DDIHWPKAS*ELDVHECERPSHMVQPNLQEQMQVLPV--YASGEILAPLLIFLFQKHSSN 214
            ++  +P++  E   HEC RP+  ++P   E M    +  +   E    +   +F++  ++
Sbjct: 929  EEYFYPRSWGEGGAHECIRPTRPLEPKDLEFMITAGIAEFEDPENALKVYELIFKRFMAS 988

Query: 215  QLRPFHVATQKWNRGLP 265
            Q+RP  V T++    LP
Sbjct: 989  QMRPAKVITEEIILKLP 1005


>sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein
           kinase roco10 OS=Dictyostelium discoideum GN=roco10 PE=3
           SV=1
          Length = 2646

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 290 MMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKLKVEPISPQRHI 150
           ++D + ++  S DSI     G AS++ S     +   + P SPQ+++
Sbjct: 4   LLDDDEIIQVSPDSIITSSIGSASLNYSVNGADDNKSIPPSSPQQNL 50


>sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription
            subunit 13-like OS=Danio rerio GN=zgc:153454 PE=2 SV=1
          Length = 2102

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
 Frame = -3

Query: 175  SQYLPRGIYWQDLHLFLE--------VWLHHMRRPLTFMNVQFLTGFGP 53
            SQYL + ++ ++ H++ +        V+    RR  T  NV+ LTGFGP
Sbjct: 1635 SQYLLQPVWSEERHIYAQHLKSLAFSVYTQCRRRLPTSTNVKTLTGFGP 1683


>sp|Q8XTL6|XERC2_RALSO Tyrosine recombinase xerC 2 OS=Ralstonia
           solanacearum GN=xerC2 PE=3 SV=1
          Length = 347

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 341 RVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKLKVE 174
           RV+PV V +LA +D  L+     L+ A  +++FV  +G+  +   YV+   K  +E
Sbjct: 200 RVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGE-PVSPEYVASRVKRYME 254
tr_hit_id A9TW23
Definition tr|A9TW23|A9TW23_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 116
Score (bit) 156.0
E-value 4.0e-37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915418|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D01.
         (387 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TW23|A9TW23_PHYPA Predicted protein OS=Physcomitrella paten...   156   4e-37
tr|A7Q8R7|A7Q8R7_VITVI Chromosome chr5 scaffold_64, whole genome...   156   6e-37
tr|O23465|O23465_ARATH Putative uncharacterized protein dl4125c ...   155   1e-36
tr|A9T5S3|A9T5S3_PHYPA Predicted protein OS=Physcomitrella paten...   154   2e-36
tr|Q10MF7|Q10MF7_ORYSJ Expressed protein OS=Oryza sativa subsp. ...   148   2e-34
tr|Q10MF6|Q10MF6_ORYSJ Expressed protein OS=Oryza sativa subsp. ...   148   2e-34
tr|Q0DSF8|Q0DSF8_ORYSJ Os03g0310500 protein (Fragment) OS=Oryza ...   148   2e-34
tr|B8AMI8|B8AMI8_ORYSI Putative uncharacterized protein OS=Oryza...   148   2e-34
tr|A3AH97|A3AH97_ORYSJ Putative uncharacterized protein OS=Oryza...   148   2e-34
tr|A7Q8W2|A7Q8W2_VITVI Chromosome chr5 scaffold_64, whole genome...   134   3e-30
tr|A9TV70|A9TV70_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.13 
tr|Q7PXZ5|Q7PXZ5_ANOGA AGAP001672-PA OS=Anopheles gambiae GN=AGA...    36   0.85 
tr|Q5VP90|Q5VP90_ORYSJ Os06g0584200 protein OS=Oryza sativa subs...    36   1.1  
tr|Q5VP89|Q5VP89_ORYSJ Os06g0585200 protein OS=Oryza sativa subs...    36   1.1  
tr|A2YEF2|A2YEF2_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q9LHA3|Q9LHA3_ARATH Arabidopsis thaliana genomic DNA, chromos...    34   3.2  
tr|B7ZYK2|B7ZYK2_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.2  

>tr|A9TW23|A9TW23_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_226015 PE=4 SV=1
          Length = 437

 Score =  156 bits (395), Expect = 4e-37
 Identities = 74/116 (63%), Positives = 89/116 (76%)
 Frame = -2

Query: 353 SYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKLKVE 174
           S+GTRVIPVFVLSL  VDPQL+M+GE+L+W SHD++FVLQH    I LS VSET+++K  
Sbjct: 145 SHGTRVIPVFVLSLEGVDPQLLMEGENLMWVSHDAVFVLQHSGGPITLSAVSETKRMKAT 204

Query: 173 PISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGIS 6
           P SPQRHI            APYE+ASHIH+RP+L+WLWASG HPFGPFSN S +S
Sbjct: 205 PNSPQRHIIAGLAAVVGGLVAPYERASHIHDRPILDWLWASGHHPFGPFSNTSTVS 260


>tr|A7Q8R7|A7Q8R7_VITVI Chromosome chr5 scaffold_64, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033156001
           PE=4 SV=1
          Length = 809

 Score =  156 bits (394), Expect = 6e-37
 Identities = 74/124 (59%), Positives = 90/124 (72%)
 Frame = -2

Query: 374 QEDGVYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSE 195
           ++  ++ +YGTRVIPVFVLSLA+VDP LMM+ ESL+W S+D + VLQH    I LSYVSE
Sbjct: 510 KQSDLHRTYGTRVIPVFVLSLADVDPHLMMEDESLVWTSNDVVIVLQHQNEKIPLSYVSE 569

Query: 194 TEKLKVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHS 15
           TE+    P   QRHI            APYEKASH+HERP++NWLW++GCHPFGPFSN S
Sbjct: 570 TERRHAIPSQAQRHILAGLASAVGGLSAPYEKASHVHERPIVNWLWSAGCHPFGPFSNTS 629

Query: 14  GISQ 3
            ISQ
Sbjct: 630 QISQ 633


>tr|O23465|O23465_ARATH Putative uncharacterized protein dl4125c
           OS=Arabidopsis thaliana GN=dl4125c PE=2 SV=1
          Length = 429

 Score =  155 bits (391), Expect = 1e-36
 Identities = 75/128 (58%), Positives = 89/128 (69%)
 Frame = -2

Query: 386 KQIPQEDGVYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLS 207
           K + ++  +Y +YGTRVIPVF+LSLA+VDP LMM+ ESL+WAS D + VLQH    I LS
Sbjct: 123 KAVKKKGDLYRTYGTRVIPVFILSLADVDPMLMMEDESLVWASSDVVIVLQHLNEKIPLS 182

Query: 206 YVSETEKLKVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPF 27
           YVSETE+    P   QRH+            APYEK SH HERP+ NWLWA+GCHPFGPF
Sbjct: 183 YVSETERQHAVPSQVQRHVLAGIASALGGVSAPYEKTSHAHERPITNWLWAAGCHPFGPF 242

Query: 26  SNHSGISQ 3
           SN S ISQ
Sbjct: 243 SNVSLISQ 250


>tr|A9T5S3|A9T5S3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191923 PE=4 SV=1
          Length = 436

 Score =  154 bits (390), Expect = 2e-36
 Identities = 74/116 (63%), Positives = 88/116 (75%)
 Frame = -2

Query: 353 SYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKLKVE 174
           S+GTRV+PVFVLSL  VDPQL+M+GE+L+W SHD+IFVLQH    I LS VSET+K+K  
Sbjct: 144 SHGTRVVPVFVLSLDGVDPQLLMEGENLMWVSHDAIFVLQHPGDPITLSAVSETKKMKAI 203

Query: 173 PISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGIS 6
           P SPQRHI            APYE+ASHIH+RP+L+WLWA G HPFGPFSN S +S
Sbjct: 204 PTSPQRHIIAGLAAVVGGLVAPYERASHIHDRPILDWLWACGHHPFGPFSNTSSVS 259


>tr|Q10MF7|Q10MF7_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g19690 PE=4 SV=1
          Length = 813

 Score =  148 bits (373), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = -2

Query: 362 VYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKL 183
           +Y +YGTRVIPVFVLSLA+VD +L+M+ E+L+W S D + VL+H    + LSYVSET + 
Sbjct: 518 LYRTYGTRVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQ 577

Query: 182 KVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
              P   QRHI            APYE+ASHIHERPV+NWLWA+GCHPFGPFSN S ISQ
Sbjct: 578 FAFPSLAQRHILAGLASAVGGLSAPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQ 637


>tr|Q10MF6|Q10MF6_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g19690 PE=4 SV=1
          Length = 742

 Score =  148 bits (373), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = -2

Query: 362 VYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKL 183
           +Y +YGTRVIPVFVLSLA+VD +L+M+ E+L+W S D + VL+H    + LSYVSET + 
Sbjct: 518 LYRTYGTRVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQ 577

Query: 182 KVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
              P   QRHI            APYE+ASHIHERPV+NWLWA+GCHPFGPFSN S ISQ
Sbjct: 578 FAFPSLAQRHILAGLASAVGGLSAPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQ 637


>tr|Q0DSF8|Q0DSF8_ORYSJ Os03g0310500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0310500 PE=4 SV=1
          Length = 334

 Score =  148 bits (373), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = -2

Query: 362 VYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKL 183
           +Y +YGTRVIPVFVLSLA+VD +L+M+ E+L+W S D + VL+H    + LSYVSET + 
Sbjct: 39  LYRTYGTRVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQ 98

Query: 182 KVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
              P   QRHI            APYE+ASHIHERPV+NWLWA+GCHPFGPFSN S ISQ
Sbjct: 99  FAFPSLAQRHILAGLASAVGGLSAPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQ 158


>tr|B8AMI8|B8AMI8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11272 PE=4 SV=1
          Length = 818

 Score =  148 bits (373), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = -2

Query: 362 VYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKL 183
           +Y +YGTRVIPVFVLSLA+VD +L+M+ E+L+W S D + VL+H    + LSYVSET + 
Sbjct: 523 LYRTYGTRVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQ 582

Query: 182 KVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
              P   QRHI            APYE+ASHIHERPV+NWLWA+GCHPFGPFSN S ISQ
Sbjct: 583 FAFPSLAQRHILAGLASAVGGLSAPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQ 642


>tr|A3AH97|A3AH97_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010169 PE=4 SV=1
          Length = 813

 Score =  148 bits (373), Expect = 2e-34
 Identities = 71/120 (59%), Positives = 86/120 (71%)
 Frame = -2

Query: 362 VYVSYGTRVIPVFVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKL 183
           +Y +YGTRVIPVFVLSLA+VD +L+M+ E+L+W S D + VL+H    + LSYVSET + 
Sbjct: 518 LYRTYGTRVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQ 577

Query: 182 KVEPISPQRHIXXXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
              P   QRHI            APYE+ASHIHERPV+NWLWA+GCHPFGPFSN S ISQ
Sbjct: 578 FAFPSLAQRHILAGLASAVGGLSAPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQ 637


>tr|A7Q8W2|A7Q8W2_VITVI Chromosome chr5 scaffold_64, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033207001
           PE=4 SV=1
          Length = 389

 Score =  134 bits (336), Expect = 3e-30
 Identities = 64/108 (59%), Positives = 75/108 (69%)
 Frame = -2

Query: 326 FVLSLAEVDPQLMMDGESLLWASHDSIFVLQHGKASIDLSYVSETEKLKVEPISPQRHIX 147
           FVLSLA+VDP LMM+ ESL+W S+D + VLQH    I LSYVSE E+    P   QRHI 
Sbjct: 118 FVLSLADVDPHLMMEDESLVWISNDVVIVLQHQNEKIPLSYVSERERRHAIPSQAQRHIL 177

Query: 146 XXXXXXXXXXXAPYEKASHIHERPVLNWLWASGCHPFGPFSNHSGISQ 3
                      APYEKASH+HERP++NWLW+ GCHPFGPFSN S +SQ
Sbjct: 178 AGLASAVGGLSAPYEKASHVHERPIVNWLWSVGCHPFGPFSNTSQMSQ 225