NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915422
Clone id YMU001_000071_D05
Library
Length 334
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCGCGAATTCTTCCAGTTTTTTTGTGCACACGGATAGACAAAATTACATTA
TGGTAAGTGTTTATCATTAGCAAGTTACTGTATATTGATTTCCACTATAAAGAAGCAAAT
GAACAAAAAAGCAGCAGCATCAGGTGCACACAGGGTGAAAGCAACAGGAGAGTTCTTCCA
AAAACCAAAAGCCAGGTGGCTTGAGGTACATCGGTGCCTCATCAAACGTCATTGTCGTCC
TTTAAACAGACAACACAGCTAATCCTCCTCCAAATCATCTTCAGTATTCAAGAACCATTC
AAATAATTACCTAGGGGTTCCCATACATTGCAAC
■■Homology search results ■■ -
sp_hit_id Q34878
Definition sp|Q34878|NU4M_LEMCA NADH-ubiquinone oxidoreductase chain 4 OS=Lemur catta
Align length 53
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915422|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D05.
         (307 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q34878|NU4M_LEMCA NADH-ubiquinone oxidoreductase chain 4 OS=L...    32   0.99 
sp|Q591Y7|NU4M_MICSM NADH-ubiquinone oxidoreductase chain 4 OS=M...    32   1.3  
sp|Q591M5|NU4M_MICSI NADH-ubiquinone oxidoreductase chain 4 OS=M...    31   2.2  
sp|Q9JKT8|TR114_RAT Taste receptor type 2 member 114 OS=Rattus n...    30   2.9  
sp|O79881|NU4M_PIG NADH-ubiquinone oxidoreductase chain 4 OS=Sus...    30   4.9  
sp|P34364|YLH0_CAEEL Uncharacterized protein C48B4.10 OS=Caenorh...    29   6.4  
sp|Q85DA7|NU4M_LEPST NADH-ubiquinone oxidoreductase chain 4 OS=L...    29   8.4  
sp|P03910|NU4M_BOVIN NADH-ubiquinone oxidoreductase chain 4 OS=B...    29   8.4  
sp|Q576B5|NU4M_BOSIN NADH-ubiquinone oxidoreductase chain 4 OS=B...    29   8.4  

>sp|Q34878|NU4M_LEMCA NADH-ubiquinone oxidoreductase chain 4
           OS=Lemur catta GN=MT-ND4 PE=3 SV=2
          Length = 459

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILSI 15
           ATW L+   T L L P ++L+  LF + AS  W +I   L+ +N     + S+
Sbjct: 356 ATWWLLASLTNLALPPSINLIGELFVTMASFSWSNITIILMGLNMLITALYSL 408


>sp|Q591Y7|NU4M_MICSM NADH-ubiquinone oxidoreductase chain 4
           OS=Microcebus sambiranensis GN=MT-ND4 PE=3 SV=1
          Length = 459

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILS 18
           ATW L+   T L L P ++L+  LF   AS  W    SNL +I T  N++++
Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSW----SNLTIIMTGFNMLIT 403


>sp|Q591M5|NU4M_MICSI NADH-ubiquinone oxidoreductase chain 4
           OS=Microcebus simmonsi GN=MT-ND4 PE=3 SV=1
          Length = 459

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILS 18
           ATW L+   T L L P ++L+  LF   AS  W    SNL +I T  N++++
Sbjct: 356 ATWWLLASLTNLALPPFINLIGELFVIMASFSW----SNLTIIMTGLNMLIT 403


>sp|Q9JKT8|TR114_RAT Taste receptor type 2 member 114 OS=Rattus
           norvegicus GN=Tas2r114 PE=2 SV=1
          Length = 309

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 182 VPQATWLLVFGRTLLLLSPCVHLMLLLFCS 93
           VP+   L VFG T+  L PC H ++L+  +
Sbjct: 254 VPENNLLFVFGLTIAFLYPCCHSLILILAN 283


>sp|O79881|NU4M_PIG NADH-ubiquinone oxidoreductase chain 4 OS=Sus
           scrofa GN=MT-ND4 PE=3 SV=2
          Length = 459

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILSI 15
           ATW L+   T L L P ++L+  LF   AS  W +I   L+ +N     + S+
Sbjct: 356 ATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYSL 408


>sp|P34364|YLH0_CAEEL Uncharacterized protein C48B4.10
           OS=Caenorhabditis elegans GN=C48B4.10 PE=2 SV=2
          Length = 182

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 156 FWKNSPVAFTLCAPDAAAFLFICFFI 79
           F+ +  + F  C+P A AF+F+C +I
Sbjct: 107 FFGDKDITFNQCSPFAYAFIFLCIYI 132


>sp|Q85DA7|NU4M_LEPST NADH-ubiquinone oxidoreductase chain 4
           OS=Lepilemur septentrionalis GN=MT-ND4 PE=3 SV=1
          Length = 459

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILS 18
           +TW L+   T L L P ++L+  LF + A+  W    SN+ +I T  N++++
Sbjct: 356 STWWLLASLTNLALPPSINLIGELFITMATFSW----SNMTIILTGLNMLIT 403


>sp|P03910|NU4M_BOVIN NADH-ubiquinone oxidoreductase chain 4 OS=Bos
           taurus GN=MT-ND4 PE=1 SV=1
          Length = 459

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILSI 15
           ATW L+   T L L P ++L+  LF   ++  W +I   L+ +N     + S+
Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYSL 408


>sp|Q576B5|NU4M_BOSIN NADH-ubiquinone oxidoreductase chain 4 OS=Bos
           indicus GN=MT-ND4 PE=3 SV=1
          Length = 459

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILSI 15
           ATW L+   T L L P ++L+  LF   ++  W +I   L+ +N     + S+
Sbjct: 356 ATWWLLASLTNLALPPTINLIGELFVVMSTFSWSNITIILMGVNMVITALYSL 408
tr_hit_id Q8SJM6
Definition tr|Q8SJM6|Q8SJM6_SORTR NADH-ubiquinone oxidoreductase chain 4 (Fragment) OS=Sorex trowbridgii
Align length 52
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915422|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D05.
         (307 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8SJM6|Q8SJM6_SORTR NADH-ubiquinone oxidoreductase chain 4 (F...    33   9.4  

>tr|Q8SJM6|Q8SJM6_SORTR NADH-ubiquinone oxidoreductase chain 4
           (Fragment) OS=Sorex trowbridgii GN=ND4 PE=3 SV=1
          Length = 194

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 173 ATWLLVFGRTLLLLSPCVHLMLLLFCSFASL*WKSIYSNLLMINTYHNVILS 18
           ATW L+   T L L P ++L+  LF   AS  W    SN+ M+ T  NV+++
Sbjct: 105 ATWWLLASLTNLALPPTINLIGELFVMLASFSW----SNITMLLTGLNVVIT 152