BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915423|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D06.
         (262 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcriptio...    29   6.5  
sp|P54282|CAC1A_RAT Voltage-dependent P/Q-type calcium channel s...    29   8.5  

>sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcription
            subunit 13-like OS=Mus musculus GN=Med13l PE=2 SV=2
          Length = 2207

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 79   QEQPCHKTRLPKLFSILLIQSPHSTDFHRLNASKYC*RGIYHCLPT*SWRQDNSNA 246
            Q +   K   P +  +LL+Q+ H+  F  L+   Y      H LP  SW  D   A
Sbjct: 1210 QVEGARKAPEPPVSLLLLLQNQHTQPFASLSFLDYISSANRHALPCVSWTYDRVQA 1265


>sp|P54282|CAC1A_RAT Voltage-dependent P/Q-type calcium channel
            subunit alpha-1A OS=Rattus norvegicus GN=Cacna1a PE=2
            SV=1
          Length = 2212

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 53   SCKRLRPLSKNNRVTRPDCPSYFLYYLF 136
            SC   +P  KN+ + +P+C + F Y+ F
Sbjct: 1715 SCLSGKPCDKNSGIQKPECGNEFAYFYF 1742

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915423|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D06.
         (262 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q97W97|Q97W97_SULSO Transport protein, putative OS=Sulfolobus...    33   5.4  

>tr|Q97W97|Q97W97_SULSO Transport protein, putative OS=Sulfolobus
           solfataricus GN=SSO2338 PE=4 SV=1
          Length = 329

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 3   VINILDILTKLLQAVSIAAKG*GHLARTTVSQDPIAQVIFYITYSIPPFN*FPQTKCLKI 182
           VINI  IL  LL    +  K  G  ++ +VS   +  ++ Y++   P F        L++
Sbjct: 147 VINISGILIMLLALFELNGKEFGERSKISVSFPRLTSILIYVSALTPAFILQVMPSFLEV 206

Query: 183 LLKGYLSLPSHLI 221
           +   +L LPS+L+
Sbjct: 207 IKLTWLILPSYLL 219