BP915427
Clone id YMU001_000071_D10
Library
Length 243
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTTCATGATGGCCTCCAGCCATCGCTAGAGAGAGGGCCCTTCCCTCACAGACAGCCTCAA
AACTCATGTTTCAAGACTAGAGCAAGGGCCTCATTCGCTTTGAGAAGAAAGAGCGAGGAT
GAGGATTTTGCCGGGCTTTGGGTGTGTAACGCCACAAAGGCAGCAAATGTTAAAGTTATC
CCCCATGTCAAAACACAGGACAACGAGGAGGAGGAGGAAGAAGAAGAAAATGCAGAGTCA
ATT
■■Homology search results ■■ -
sp_hit_id P73651
Definition sp|P73651|RIBF_SYNY3 Riboflavin biosynthesis protein ribF OS=Synechocystis sp. (strain PCC 6803)
Align length 16
Score (bit) 32.0
E-value 0.99
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915427|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D10.
(243 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P73651|RIBF_SYNY3 Riboflavin biosynthesis protein ribF OS=Syn... 32 0.99
sp|Q9BG97|NR0B1_PANTR Nuclear receptor subfamily 0 group B membe... 31 2.2
sp|P51843|NR0B1_HUMAN Nuclear receptor subfamily 0 group B membe... 30 2.9
sp|Q9BG96|NR0B1_PONPY Nuclear receptor subfamily 0 group B membe... 30 3.7
sp|P79386|NR0B1_PIG Nuclear receptor subfamily 0 group B member ... 30 3.7
sp|Q61066|NR0B1_MOUSE Nuclear receptor subfamily 0 group B membe... 30 3.7
sp|Q9BG93|NR0B1_MACMU Nuclear receptor subfamily 0 group B membe... 30 3.7
sp|Q9BG94|NR0B1_CALJA Nuclear receptor subfamily 0 group B membe... 30 3.7
sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 113 OS... 29 6.4
sp|P70503|NR0B1_RAT Nuclear receptor subfamily 0 group B member ... 29 8.3
sp|Q3BSE3|Y2589_XANC5 UPF0061 protein XCV2589 OS=Xanthomonas cam... 29 8.4

>sp|P73651|RIBF_SYNY3 Riboflavin biosynthesis protein ribF
OS=Synechocystis sp. (strain PCC 6803) GN=ribF PE=3 SV=1
Length = 284

Score = 32.0 bits (71), Expect = 0.99
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3

Query: 127 NPHPRSFFSKRMRPLL 80
NPHPRSFFS R +PLL
Sbjct: 25 NPHPRSFFSGRTQPLL 40


>sp|Q9BG97|NR0B1_PANTR Nuclear receptor subfamily 0 group B member 1
OS=Pan troglodytes GN=NR0B1 PE=2 SV=1
Length = 470

Score = 30.8 bits (68), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 132 CCFCGENHPRQGSILYSLLTSSKQ 155



Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 66 CCFCGKDHPRQGSILYSMLTSAKQ 89


>sp|P51843|NR0B1_HUMAN Nuclear receptor subfamily 0 group B member 1
OS=Homo sapiens GN=NR0B1 PE=1 SV=2
Length = 470

Score = 30.4 bits (67), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 132 CCFCGEDHPRQGSILYSLLTSSKQ 155



Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 66 CCFCGKDHPRQGSILYSMLTSAKQ 89


>sp|Q9BG96|NR0B1_PONPY Nuclear receptor subfamily 0 group B member 1
OS=Pongo pygmaeus GN=NR0B1 PE=2 SV=1
Length = 470

Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 66 CCFCGKDHPRQGSILYSMLTSAKQ 89



Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 132 CCFCGEDHPRQGSILYSLLTSAKQ 155


>sp|P79386|NR0B1_PIG Nuclear receptor subfamily 0 group B member 1
OS=Sus scrofa GN=NR0B1 PE=2 SV=2
Length = 471

Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 133 CCFCGEEHPRQGSILYSLLTSAKQ 156



Score = 29.6 bits (65), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 66 CCFCGEDHPRQGSILYNMLTSAKQ 89


>sp|Q61066|NR0B1_MOUSE Nuclear receptor subfamily 0 group B member 1
OS=Mus musculus GN=Nr0b1 PE=2 SV=1
Length = 472

Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 134 CCFCGEEHPRQGSILYSLLTSAQQ 157


>sp|Q9BG93|NR0B1_MACMU Nuclear receptor subfamily 0 group B member 1
OS=Macaca mulatta GN=NR0B1 PE=2 SV=1
Length = 470

Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 132 CCFCGEDHPRQGSILYSLLTSAKQ 155



Score = 28.9 bits (63), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L++ +
Sbjct: 66 CCFCGKDHPRQGSILYSMLTNAKQ 89


>sp|Q9BG94|NR0B1_CALJA Nuclear receptor subfamily 0 group B member 1
OS=Callithrix jacchus GN=NR0B1 PE=2 SV=1
Length = 470

Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 66 CCFCGKDHPRQGSILYSMLTSAKQ 89



Score = 30.0 bits (66), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L+S +
Sbjct: 132 CCFCGEDHPRQGSILYSLLTSAKQ 155


>sp|Q8IZF5|GP113_HUMAN Probable G-protein coupled receptor 113
OS=Homo sapiens GN=GPR113 PE=2 SV=1
Length = 1079

Score = 29.3 bits (64), Expect = 6.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3

Query: 9 WPPAIARERALPSQTASKLMFQD*SKGL---IRFEKKERG*GFCRALGV*RHKGSKC*SY 179
WPP ++R LP+ +AS + GL +G +C L + S C Y
Sbjct: 137 WPPELSRTLTLPAASASSSP-RPLLTGLRLTTECNVNHKGNFYCACLSGYQWNTSICLHY 195

Query: 180 PPCQN 194
PPCQ+
Sbjct: 196 PPCQS 200


>sp|P70503|NR0B1_RAT Nuclear receptor subfamily 0 group B member 1
OS=Rattus norvegicus GN=Nr0b1 PE=2 SV=1
Length = 472

Score = 28.9 bits (63), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1

Query: 165 CCLCGVTHPKPGKILILALSSQSE 94
CC CG HP+ G IL L++ +
Sbjct: 134 CCFCGKKHPRQGSILYSLLTNAQQ 157


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915427|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D10.
(243 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******