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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915428
Clone id YMU001_000071_D11
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAACACATACTCAAGCACACATGCACAGAAGCAATATAAAGCTTGGCTAACGAGTGGG
GCTATATATCATGATGGTACAATAGTCACTAGAGCCCCGTCGATATTTGGCACAATACTT
GAGCTCTCGGGCTCTATAATTACACTGTGTGATGAGGAAGGTACCCGAGCATGTCAGAAA
CTTCCATCCTACCATTCCACAGTCTTTTAAGGTCGCTATTTTGGTCACAATAATATTAAT
GCCAGGGGAGGCTCCTAGAAAGAGTCTGAAAACCTGACTCGGGGAGCTAAGTTCTGAGTA
AAAGCATTTATGTACCCTTTTAAGGCTTGAAGGCCCTTTGTTGCTAGCTAGAAACTTTTC
TACTAAAAAATGGTAGCTAGCCAAAGTACGATGGATTTAAGATGTGGCATACTCCCGACT
CGTATTGCATCGACCAAAGACAATAGTCAAAGGCCCAATGGCTCCTACTGGTAGTAGC
■■Homology search results ■■ -
sp_hit_id Q5RIV7
Definition sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio
Align length 76
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915428|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D11.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Dan...    32   1.5  
sp|Q6ZW05|CF138_HUMAN Patched domain-containing protein C6orf138...    32   1.9  

>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio
           rerio GN=ptchd1 PE=3 SV=1
          Length = 897

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = -2

Query: 450 LTIVFGRCNTSREYATS*IHRTLASYHFL--VEKFLASNKGPSSLKRVHKCFYSELSSPS 277
           LTI+FG    SR    + +   +A  H L  +E+ LA++  P    + HK  YS+L +P 
Sbjct: 35  LTIIFGSTVLSRFKPETDLEILVAPTHSLAKIERSLANSLFPIDQSK-HK-LYSDLHTPG 92

Query: 276 QVFRLFLGASPGINII 229
           +  RL L A  G NI+
Sbjct: 93  RYGRLILLARSGGNIL 108


>sp|Q6ZW05|CF138_HUMAN Patched domain-containing protein C6orf138
           OS=Homo sapiens GN=C6orf138 PE=2 SV=2
          Length = 829

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -2

Query: 450 LTIVFGRCNTSREYATS*IHRTLASYHFL--VEKFLASNKGPSSLKRVHKCFYSELSSPS 277
           LTI FG    +R      + R +A  H L  +E+ LAS+  P  L +     YS+L +P 
Sbjct: 35  LTITFGLSALNRFQPEGDLERLVAPSHSLAKIERSLASSLFP--LDQSKSQLYSDLHTPG 92

Query: 276 QVFRLFLGASPGINIIV 226
           +  R+ L +  G NI++
Sbjct: 93  RYGRVILLSPTGDNILL 109
tr_hit_id Q9CXL4
Definition tr|Q9CXL4|Q9CXL4_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 77
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915428|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_D11.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9CXL4|Q9CXL4_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.49 
tr|B7ZNK4|B7ZNK4_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.49 
tr|A6QPM0|A6QPM0_BOVIN MGC148542 protein OS=Bos taurus GN=MGC148...    35   2.4  

>tr|Q9CXL4|Q9CXL4_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=3110082D06Rik PE=2 SV=1
          Length = 255

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -2

Query: 450 LTIVFGRCNTSREYATS*IHRTLASYHFL--VEKFLASNKGPSSLKRVHKCFYSELSSPS 277
           LTI FG    +R      + R +A  H L  +E+ LAS+  P  L +     YS+L +P 
Sbjct: 49  LTITFGLSALNRFQTEGDLERLVAPSHSLAKIERSLASSLFP--LDQSKSQLYSDLHTPG 106

Query: 276 QVFRLFLGASPGINIIV 226
           +  R+ L +SPG NI++
Sbjct: 107 RYGRVILLSSPGDNILL 123


>tr|B7ZNK4|B7ZNK4_MOUSE Putative uncharacterized protein OS=Mus
           musculus PE=2 SV=1
          Length = 350

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -2

Query: 450 LTIVFGRCNTSREYATS*IHRTLASYHFL--VEKFLASNKGPSSLKRVHKCFYSELSSPS 277
           LTI FG    +R      + R +A  H L  +E+ LAS+  P  L +     YS+L +P 
Sbjct: 35  LTITFGLSALNRLQTEGDLERLVAPSHSLAKIERSLASSLFP--LDQSKSQLYSDLHTPG 92

Query: 276 QVFRLFLGASPGINIIV 226
           +  R+ L +SPG NI++
Sbjct: 93  RYGRVILLSSPGDNILL 109


>tr|A6QPM0|A6QPM0_BOVIN MGC148542 protein OS=Bos taurus GN=MGC148542
           PE=2 SV=1
          Length = 202

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -2

Query: 450 LTIVFGRCNTSREYATS*IHRTLASYHFL--VEKFLASNKGPSSLKRVHKCFYSELSSPS 277
           LTI FG    +R      + R +A  H L  +E+ LAS+  P  L +     YS+L +P 
Sbjct: 35  LTITFGLSALNRFQPEGDLERLVAPSHSLAKIERSLASSLFP--LDQSKSQLYSDLHTPG 92

Query: 276 QVFRLFLGASPGINIIV 226
           +  R+ L + PG NI++
Sbjct: 93  RYGRVILLSPPGDNILL 109