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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915431
Clone id YMU001_000071_E02
Library
Length 167
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGAGTGCTGTTTGGTTTCTTCAAGACCTCTCACATGAGCAAGATGCTGGTCAAAGCCTG
GTTTTGGAAGATGTGAAGGAATTGACCTTGGCGGACACTCCTCTTCTTGGATCTCAGAAT
GTGGTTAATGCAGCTGTCGGCAGAATGGCTGTTTCTAAGGGAAGGCA
■■Homology search results ■■ -
sp_hit_id Q83EE0
Definition sp|Q83EE0|RL21_COXBU 50S ribosomal protein L21 OS=Coxiella burnetii
Align length 42
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915431|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_E02.
         (167 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q83EE0|RL21_COXBU 50S ribosomal protein L21 OS=Coxiella burne...    30   2.9  
sp|A9NBL3|RL21_COXBR 50S ribosomal protein L21 OS=Coxiella burne...    30   2.9  
sp|A9KEJ9|RL21_COXBN 50S ribosomal protein L21 OS=Coxiella burne...    30   2.9  
sp|Q93MK7|RPOB_WOLPI DNA-directed RNA polymerase subunit beta OS...    29   8.4  

>sp|Q83EE0|RL21_COXBU 50S ribosomal protein L21 OS=Coxiella burnetii
           GN=rplU PE=3 SV=2
          Length = 115

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 40  QDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           QD GQS+  +DV  +   D   +G+ +V +AAV    V +GR
Sbjct: 27  QDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGR 68


>sp|A9NBL3|RL21_COXBR 50S ribosomal protein L21 OS=Coxiella burnetii
           (strain RSA 331 / Henzerling II) GN=rplU PE=3 SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 40  QDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           QD GQS+  +DV  +   D   +G+ +V +AAV    V +GR
Sbjct: 27  QDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGR 68


>sp|A9KEJ9|RL21_COXBN 50S ribosomal protein L21 OS=Coxiella burnetii
           (strain Dugway 5J108-111) GN=rplU PE=3 SV=1
          Length = 115

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 40  QDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           QD GQS+  +DV  +   D   +G+ +V +AAV    V +GR
Sbjct: 27  QDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGR 68


>sp|Q93MK7|RPOB_WOLPI DNA-directed RNA polymerase subunit beta
           OS=Wolbachia pipientis GN=rpoB PE=3 SV=1
          Length = 1436

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 46  AGQSLVLEDVKELTLADTPLLGSQNVVNAAVG 141
           AG+S+ LED+K+L L     +   N+ N +VG
Sbjct: 339 AGESIKLEDIKKLELLSIDKISVLNIDNVSVG 370
tr_hit_id A9NPW5
Definition tr|A9NPW5|A9NPW5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 55
Score (bit) 62.0
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915431|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_E02.
         (167 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NPW5|A9NPW5_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|B6TPU9|B6TPU9_MAIZE RAN guanine nucleotide release factor OS=...    54   3e-06
tr|B4FDI3|B4FDI3_MAIZE Putative uncharacterized protein OS=Zea m...    54   3e-06
tr|A9TS24|A9TS24_PHYPA Predicted protein OS=Physcomitrella paten...    53   9e-06
tr|Q7X8P2|Q7X8P2_ORYSJ Os04g0459600 protein OS=Oryza sativa subs...    50   6e-05
tr|Q01IJ5|Q01IJ5_ORYSA H0219H12.2 protein (OSIGBa0097P08.7 prote...    50   6e-05
tr|B8AUQ5|B8AUQ5_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A3AUI0|A3AUI0_ORYSJ Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A9SQK8|A9SQK8_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A7QEF7|A7QEF7_VITVI Chromosome chr1 scaffold_84, whole genome...    46   8e-04
tr|A9PAR8|A9PAR8_POPTR Putative uncharacterized protein OS=Popul...    45   0.002
tr|Q94C15|Q94C15_ARATH At1g69680/T6C23_12 (Putative uncharacteri...    40   0.044
tr|A7SAB0|A7SAB0_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   5.4  

>tr|A9NPW5|A9NPW5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 205

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = +1

Query: 1   QSAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           QSA WFLQDL++EQD+   LV+E V  +  +D P L    VV A VG+MAVSKGR
Sbjct: 69  QSASWFLQDLANEQDSAGDLVVESVSVVAPSDVPFLDPATVVTAVVGQMAVSKGR 123


>tr|B6TPU9|B6TPU9_MAIZE RAN guanine nucleotide release factor OS=Zea
           mays PE=2 SV=1
          Length = 202

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFLQD+++EQDAG +LV+E    L LA   L  +  V   AVG++AVSKGR
Sbjct: 65  SALWFLQDIANEQDAGDNLVVEHSGTLELAALHLGEAPAVAATAVGQLAVSKGR 118


>tr|B4FDI3|B4FDI3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 202

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFLQD+++EQDAG +LV+E    L LA   L  +  V   AVG++AVSKGR
Sbjct: 65  SALWFLQDIANEQDAGDNLVVEHSGTLELAALHLGEAPAVAATAVGQLAVSKGR 118


>tr|A9TS24|A9TS24_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_149666 PE=4 SV=1
          Length = 195

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA WFL+DL+ EQ +  SLV+E+   +  A+ P L +   VNA +G MAV+KGR
Sbjct: 57  SARWFLEDLTVEQASENSLVVEEENSVPAANVPNLDANTTVNAVIGTMAVAKGR 110


>tr|Q7X8P2|Q7X8P2_ORYSJ Os04g0459600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0036B21.25 PE=2 SV=1
          Length = 202

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFL+D+++EQDAG +LV+E    + L       +  V   AVG++A+SKGR
Sbjct: 65  SALWFLRDIANEQDAGDNLVVEHSGTIELGGLRFGDAPAVAGTAVGQLAISKGR 118


>tr|Q01IJ5|Q01IJ5_ORYSA H0219H12.2 protein (OSIGBa0097P08.7 protein)
           OS=Oryza sativa GN=H0219H12.2 PE=4 SV=1
          Length = 202

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFL+D+++EQDAG +LV+E    + L       +  V   AVG++A+SKGR
Sbjct: 65  SALWFLRDIANEQDAGDNLVVEHSGTIELGGLRFGDAPAVAGTAVGQLAISKGR 118


>tr|B8AUQ5|B8AUQ5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16161 PE=4 SV=1
          Length = 202

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFL+D+++EQDAG +LV+E    + L       +  V   AVG++A+SKGR
Sbjct: 65  SALWFLRDIANEQDAGDNLVVEHSGTIELGGLRFGDAPAVAGTAVGQLAISKGR 118


>tr|A3AUI0|A3AUI0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014452 PE=3 SV=1
          Length = 400

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA+WFL+D+++EQDAG +LV+E    + L       +  V   AVG++A+SKGR
Sbjct: 263 SALWFLRDIANEQDAGDNLVVEHSGTIELGGLRFGDAPAVAGTAVGQLAISKGR 316


>tr|A9SQK8|A9SQK8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187389 PE=4 SV=1
          Length = 194

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SA WFL+DL+ EQ    +L++ED   +  A+ P L +   VNA +G M ++KGR
Sbjct: 56  SARWFLEDLAVEQAFENTLIVEDESRIPAANIPNLEANTTVNAVIGTMEIAKGR 109


>tr|A7QEF7|A7QEF7_VITVI Chromosome chr1 scaffold_84, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036992001
           PE=4 SV=1
          Length = 116

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 26/54 (48%), Positives = 31/54 (57%)
 Frame = +1

Query: 4   SAVWFLQDLSHEQDAGQSLVLEDVKELTLADTPLLGSQNVVNAAVGRMAVSKGR 165
           SAVWFLQDL+ EQDA    V+E    +            VV  AVG+MA+SKGR
Sbjct: 39  SAVWFLQDLATEQDAEGFTVIEQSGVVEAGGLRYRNMAAVVTTAVGQMAISKGR 92