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NBDC - LSDB Archive
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BP915438
Clone id YMU001_000071_E10
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCACGCCTATCTGCACACTGAATCATCCCCTTCGACGAGCACACTAGGAAAAGGTATAT
GAGAGAAGCTATAATGAGTAGCAACGCCCCGCCGCTATGGAGCACACGTTTCTTCTGGAA
TCTGAAGGGTGTGGAAGTAAAGAGAAGAAAAGTAGCTGTGAGGTCCTCATCAGCAGCTCA
GAAGGAGGTGACAAGTCAGAACTTACAGAGTCATGTGATCATTACTGGTGGCAATTGCGG
CATTGGCAAGGCAACTGCTGTTGATCTGGCAAAACAAGGAATGCATGTAACTTTGGCATG
C
■■Homology search results ■■ -
sp_hit_id A6QP05
Definition sp|A6QP05|DHR12_BOVIN Dehydrogenase/reductase SDR family member 12 OS=Bos taurus
Align length 67
Score (bit) 42.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915438|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_E10.
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6QP05|DHR12_BOVIN Dehydrogenase/reductase SDR family member ...    42   7e-04
sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus G...    42   0.001
sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member ...    41   0.002
sp|A0PJE2|DHR12_HUMAN Dehydrogenase/reductase SDR family member ...    41   0.002
sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens G...    40   0.003
sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member ...    40   0.005
sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member ...    40   0.005
sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus G...    39   0.006
sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens G...    39   0.008
sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus G...    39   0.011
sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=...    39   0.011
sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus m...    39   0.011
sp|Q06136|KDSR_HUMAN 3-ketodihydrosphingosine reductase OS=Homo ...    39   0.011
sp|Q2KIJ5|KDSR_BOVIN 3-ketodihydrosphingosine reductase OS=Bos t...    39   0.011
sp|Q5KEJ9|TSC10_CRYNE 3-ketodihydrosphingosine reductase TSC10 O...    38   0.014
sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens G...    38   0.018
sp|P0AFP4|YBBO_ECOLI Uncharacterized oxidoreductase ybbO OS=Esch...    37   0.024
sp|P0AFP5|YBBO_ECOL6 Uncharacterized oxidoreductase ybbO OS=Esch...    37   0.024
sp|Q9Y7P2|YCKF_SCHPO Uncharacterized protein C1450.15 OS=Schizos...    36   0.069
sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pong...    35   0.090
sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo...    35   0.090
sp|P14802|YOXD_BACSU Uncharacterized oxidoreductase yoxD OS=Baci...    35   0.12 
sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus ...    35   0.12 
sp|Q9VLU5|WWOX_DROME WW domain-containing oxidoreductase OS=Dros...    35   0.12 
sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Dani...    35   0.12 
sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus G...    35   0.12 
sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens G...    35   0.12 
sp|O66148|POR_PLEBO Light-dependent protochlorophyllide reductas...    35   0.15 
sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic O...    35   0.15 
sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member ...    35   0.15 

>sp|A6QP05|DHR12_BOVIN Dehydrogenase/reductase SDR family member 12
           OS=Bos taurus GN=DHRS12 PE=2 SV=1
          Length = 317

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +2

Query: 116 WNLKGVEVKRRKVAVRSSSAAQKEVTSQNLQSHV-----IITGGNCGIGKATAVDLAKQG 280
           W  KG+    R+       +A K+    +L+  V     ++TGGN GIGKATA+++AK+G
Sbjct: 9   WFAKGL----REYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRG 64

Query: 281 MHVTLAC 301
             V L C
Sbjct: 65  GTVHLVC 71


>sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus
           GN=Rdh13 PE=2 SV=1
          Length = 334

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VI+TG N GIGK TA++LAK+G +V LAC
Sbjct: 41  VIVTGANTGIGKQTALELAKRGGNVILAC 69


>sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member 13
           OS=Mus musculus GN=Dhrs13 PE=1 SV=1
          Length = 376

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           V++TG N GIGK TA++LA++G  V LAC
Sbjct: 39  VVVTGANSGIGKMTALELARRGARVVLAC 67


>sp|A0PJE2|DHR12_HUMAN Dehydrogenase/reductase SDR family member 12
           OS=Homo sapiens GN=DHRS12 PE=2 SV=2
          Length = 317

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = +2

Query: 116 WNLKGVEVKRRKVAVRSSSAAQKEVTSQNLQSHV-----IITGGNCGIGKATAVDLAKQG 280
           W  KG+    R+       +A K+    +L+  +     ++TGGN GIGKATA+++AK+G
Sbjct: 9   WFAKGL----REYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRG 64

Query: 281 MHVTLAC 301
             V L C
Sbjct: 65  GTVHLVC 71


>sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens
           GN=RDH13 PE=2 SV=2
          Length = 331

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VI+TG N GIGK TA++LA++G ++ LAC
Sbjct: 41  VIVTGANTGIGKQTALELARRGGNIILAC 69


>sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member 13
           OS=Homo sapiens GN=DHRS13 PE=2 SV=1
          Length = 377

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 218 IITGGNCGIGKATAVDLAKQGMHVTLAC 301
           ++TG N GIGK TA++LA++G  V LAC
Sbjct: 40  VVTGANSGIGKMTALELARRGARVVLAC 67


>sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member 13
           OS=Bos taurus GN=DHRS13 PE=2 SV=1
          Length = 377

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 218 IITGGNCGIGKATAVDLAKQGMHVTLAC 301
           ++TG N GIGK TA++LA++G  V LAC
Sbjct: 40  VVTGANSGIGKMTALELARRGARVVLAC 67


>sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus
           GN=Rdh11 PE=2 SV=2
          Length = 316

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 218 IITGGNCGIGKATAVDLAKQGMHVTLAC 301
           I+TG N GIGK TA DLA++G  V LAC
Sbjct: 42  IVTGANTGIGKETAKDLAQRGARVYLAC 69


>sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens
           GN=RDH11 PE=1 SV=2
          Length = 318

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           V++TG N GIGK TA +LA++G  V LAC
Sbjct: 44  VVVTGANTGIGKETAKELAQRGARVYLAC 72


>sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus
           GN=Rdh12 PE=2 SV=1
          Length = 316

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           V+ITG N GIGK TA +LA++G  V +AC
Sbjct: 42  VVITGANTGIGKETARELARRGARVYIAC 70
tr_hit_id B3RKK3
Definition tr|B3RKK3|B3RKK3_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 29
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915438|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_E10.
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3RKK3|B3RKK3_TRIAD Putative uncharacterized protein OS=Trich...    48   3e-04
tr|B3RKN3|B3RKN3_TRIAD Putative uncharacterized protein OS=Trich...    47   5e-04
tr|Q66IF0|Q66IF0_DANRE Zgc:101565 OS=Danio rerio GN=zgc:101565 P...    47   6e-04
tr|Q6NY49|Q6NY49_DANRE LOC407663 protein (Fragment) OS=Danio rer...    46   8e-04
tr|B0XLA9|B0XLA9_CULQU Retinol dehydrogenase 14 OS=Culex quinque...    45   0.001
tr|Q28IS2|Q28IS2_XENTR Retinol dehydrogenase 14 (All-trans and 9...    45   0.002
tr|A9ULR7|A9ULR7_XENTR Rdh14 protein (Fragment) OS=Xenopus tropi...    45   0.002
tr|B3RKN6|B3RKN6_TRIAD Putative uncharacterized protein OS=Trich...    45   0.002
tr|Q6DBT2|Q6DBT2_DANRE Zgc:91936 OS=Danio rerio GN=zgc:91936 PE=...    45   0.002
tr|Q5U3E7|Q5U3E7_DANRE Zgc:103654 OS=Danio rerio GN=zgc:103654 P...    45   0.002
tr|B5XAB1|B5XAB1_SALSA Dehydrogenase/reductase SDR family member...    45   0.002
tr|A8WGL5|A8WGL5_DANRE Zgc:103654 OS=Danio rerio GN=zgc:103654 P...    45   0.002
tr|B3S538|B3S538_TRIAD Putative uncharacterized protein OS=Trich...    44   0.003
tr|B3SF91|B3SF91_TRIAD Putative uncharacterized protein (Fragmen...    44   0.004
tr|Q4T886|Q4T886_TETNG Chromosome undetermined SCAF7865, whole g...    44   0.005
tr|Q17GA4|Q17GA4_AEDAE Short-chain dehydrogenase OS=Aedes aegypt...    44   0.005
tr|B3SEC9|B3SEC9_TRIAD Putative uncharacterized protein OS=Trich...    44   0.005
tr|B3SEC8|B3SEC8_TRIAD Putative uncharacterized protein OS=Trich...    44   0.005
tr|B3RKN5|B3RKN5_TRIAD Putative uncharacterized protein OS=Trich...    44   0.005
tr|B3RKN4|B3RKN4_TRIAD Putative uncharacterized protein OS=Trich...    44   0.005
tr|B3RKD0|B3RKD0_TRIAD Putative uncharacterized protein OS=Trich...    44   0.005
tr|Q6P3N2|Q6P3N2_XENTR Putative uncharacterized protein MGC76232...    43   0.007
tr|Q6DC71|Q6DC71_DANRE Retinol dehydrogenase 12, like OS=Danio r...    43   0.007
tr|B8CCB1|B8CCB1_THAPS Predicted protein OS=Thalassiosira pseudo...    43   0.007
tr|Q4QAF0|Q4QAF0_LEIMA Short chain dehydrogenase/reductase, puta...    43   0.009
tr|B6M8E4|B6M8E4_BRAFL Putative uncharacterized protein OS=Branc...    43   0.009
tr|B6M8C8|B6M8C8_BRAFL Putative uncharacterized protein OS=Branc...    43   0.009
tr|B5XB52|B5XB52_SALSA Retinol dehydrogenase 12 OS=Salmo salar G...    42   0.012
tr|Q8EQH7|Q8EQH7_OCEIH Alcohol dehydrogenase OS=Oceanobacillus i...    42   0.012
tr|A8IZE8|A8IZE8_CHLRE Predicted protein (Fragment) OS=Chlamydom...    42   0.012

>tr|B3RKK3|B3RKK3_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_37121 PE=4 SV=1
          Length = 323

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VIITGGN GIGKATA+DLA++G  V LAC
Sbjct: 41  VIITGGNTGIGKATAIDLAQRGARVILAC 69


>tr|B3RKN3|B3RKN3_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_19476 PE=4 SV=1
          Length = 323

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VIITGGN GIGK TA+DLAK+G  + LAC
Sbjct: 41  VIITGGNTGIGKETAIDLAKRGARIILAC 69


>tr|Q66IF0|Q66IF0_DANRE Zgc:101565 OS=Danio rerio GN=zgc:101565 PE=2
           SV=1
          Length = 318

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 218 IITGGNCGIGKATAVDLAKQGMHVTLAC 301
           IITGGN GIGKATA+DLA +GM V LAC
Sbjct: 40  IITGGNTGIGKATALDLAGRGMRVILAC 67


>tr|Q6NY49|Q6NY49_DANRE LOC407663 protein (Fragment) OS=Danio rerio
           GN=LOC407663 PE=2 SV=1
          Length = 331

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           V+ITGGN GIGK TAVD+AK+G  V LAC
Sbjct: 56  VLITGGNTGIGKETAVDMAKRGARVILAC 84


>tr|B0XLA9|B0XLA9_CULQU Retinol dehydrogenase 14 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ019605 PE=4 SV=1
          Length = 328

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 182 KEVTSQNLQSH-VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           K  TS+N++   VIITG N GIGK TA DLAK+G  V +AC
Sbjct: 37  KLTTSRNMEGKTVIITGANSGIGKETARDLAKRGARVIMAC 77


>tr|Q28IS2|Q28IS2_XENTR Retinol dehydrogenase 14 (All-trans and
           9-cis) OS=Xenopus tropicalis GN=rdh14 PE=2 SV=1
          Length = 323

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VIITG NCGIGKATA +L KQ   V LAC
Sbjct: 45  VIITGANCGIGKATAAELVKQEARVILAC 73


>tr|A9ULR7|A9ULR7_XENTR Rdh14 protein (Fragment) OS=Xenopus
           tropicalis GN=rdh14 PE=2 SV=1
          Length = 311

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VIITG NCGIGKATA +L KQ   V LAC
Sbjct: 33  VIITGANCGIGKATAAELVKQEARVILAC 61


>tr|B3RKN6|B3RKN6_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_19714 PE=4 SV=1
          Length = 322

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           V+ITGGN GIGK TA+DLA++G  + LAC
Sbjct: 41  VVITGGNTGIGKETAIDLAQRGARIILAC 69


>tr|Q6DBT2|Q6DBT2_DANRE Zgc:91936 OS=Danio rerio GN=zgc:91936 PE=2
           SV=1
          Length = 318

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VI+TG N GIG+ATAVDLA++G  V LAC
Sbjct: 39  VIVTGSNVGIGRATAVDLARRGARVILAC 67


>tr|Q5U3E7|Q5U3E7_DANRE Zgc:103654 OS=Danio rerio GN=zgc:103654 PE=2
           SV=1
          Length = 296

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +2

Query: 215 VIITGGNCGIGKATAVDLAKQGMHVTLAC 301
           VI+TG N GIGKATA+DLA++G  V LAC
Sbjct: 17  VIVTGANTGIGKATAMDLARRGARVILAC 45