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NBDC - LSDB Archive
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BP915441
Clone id YMU001_000071_F01
Library
Length 346
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCATGGCAGAGGAGCATGCACACCCAGTGGGTGCATGCCTGTCTTTGCTTTT
TGTGATGATTGAAAGCCAGATGGCTCAATGTCCCTAGTTTCTGCATCCACTACTTGCTTA
ACAAGAAGAAATTCATGATGATTGTCATTAAACCAGATGTCCACATAATCTACACAATCC
TTTTTGTAGAACGATGAAGAGATGTAACTTGTTACTCCGTTGATTGTAGCTGTAAAAGCA
GATTCATTTGATTGGTCCAGTTTCATTTGCACTGTTGTGGTGTTATCACTTTCTTGCACC
TTCACCTCACAACTTCCATCCTTGCAAAAAGCCACTGACATTTCCA
■■Homology search results ■■ -
sp_hit_id Q2QMG2
Definition sp|Q2QMG2|MCCA_ORYSJ Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica
Align length 111
Score (bit) 48.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915441|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F01.
         (346 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2QMG2|MCCA_ORYSJ Methylcrotonoyl-CoA carboxylase subunit alp...    49   1e-05
sp|Q42523|MCCA_ARATH Methylcrotonoyl-CoA carboxylase subunit alp...    47   4e-05
sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alp...    37   0.030
sp|O51059|Y028_BORBU Uncharacterized protein BB_0028 OS=Borrelia...    31   2.2  
sp|Q6MUM7|DNAA_MYCMS Chromosomal replication initiator protein d...    30   4.9  
sp|P03460|HEMA_INBLE Hemagglutinin OS=Influenza B virus (strain ...    29   6.4  
sp|P35889|DNAA_MYCMY Chromosomal replication initiator protein d...    29   6.4  
sp|Q67379|HEMA_INBTF Hemagglutinin (Fragment) OS=Influenza B vir...    29   8.3  
sp|Q67375|HEMA_INBP9 Hemagglutinin (Fragment) OS=Influenza B vir...    29   8.3  
sp|Q67374|HEMA_INBNY Hemagglutinin (Fragment) OS=Influenza B vir...    29   8.3  

>sp|Q2QMG2|MCCA_ORYSJ Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA
           PE=2 SV=2
          Length = 737

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -3

Query: 344 EMSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDY 165
           ++SV +  DG+  V+ ++  ++  + +K+D   +  F   + G+ + ++ +FY KD  ++
Sbjct: 566 KLSVTYRSDGTYFVETEDG-SSPGLDVKVDSRGDHDFRVDVGGLQTDVTLAFYSKDNCNH 624

Query: 164 VDIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           + IW   +HH +   +Q + AE    + S   +S +A++  HP G V AP+
Sbjct: 625 IHIWHGKHHHHY---RQTLRAEQSPDDSSQPSASSEARS--HPKGSVLAPM 670


>sp|Q42523|MCCA_ARATH Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=2 SV=2
          Length = 734

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
 Frame = -3

Query: 341 MSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYV 162
           + V +  DGS    ++E +++ ++++++ ++ +  F     G++  +S + Y KD   ++
Sbjct: 568 LGVRYQPDGS--YLIEEGNDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAAYLKDGYKHI 625

Query: 161 DIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
            IW    HH+F   KQ V  E  + E  G Q    ++T  HP G + AP+
Sbjct: 626 HIWHGSEHHQF---KQKVGIEFSEDE-EGVQHRTSSETSSHPPGTIVAPM 671


>sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2
          Length = 731

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
 Frame = -3

Query: 344 EMSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDY 165
           ++++ +  DG   ++  E + +  +++K     ++ F     GV + ++ + Y KD + +
Sbjct: 563 KLTITYQPDGRYLIET-EQNGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRH 621

Query: 164 VDIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           + IW    HH F   ++ +  E  + E S  Q   K +T  +P G V AP+
Sbjct: 622 IHIWQGSCHHYF---REKLGLELSEDEES--QHKPKVETSANPQGTVVAPM 667


>sp|O51059|Y028_BORBU Uncharacterized protein BB_0028 OS=Borrelia
           burgdorferi GN=BB_0028 PE=4 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 197 SSFYKKDCVDYVDIWFNDNHHEFLLVKQ---VVDAETRDIEPSGFQSSQKAKTGMHPL 33
           SS++ ++  D + I  N+   EF   K+    + A ++ +EP  +  SQ +KTG++ +
Sbjct: 264 SSYFAREFNDAILIGSNNGFAEFTKNKEGIFALRAPSKSVEPGAYNGSQLSKTGLNDI 321


>sp|Q6MUM7|DNAA_MYCMS Chromosomal replication initiator protein dnaA
           OS=Mycoplasma mycoides subsp. mycoides SC GN=dnaA PE=3
           SV=2
          Length = 450

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = -3

Query: 305 VKVQESDN-TTTVQMKLDQSNES----AFTATINGVTSYISSSFYK-KDCVDYVDIWFND 144
           + +Q+ DN T T  +K +  N++      +  IN +++Y S    K K  V  ++ W   
Sbjct: 270 IAIQKLDNKTATAIIKKEIKNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQ 329

Query: 143 NHHEFLLVKQVVDAETRDIEPS 78
           N  E ++  ++V    RDI  S
Sbjct: 330 NPEEKIITIEIVSDLFRDIPTS 351


>sp|P03460|HEMA_INBLE Hemagglutinin OS=Influenza B virus (strain
           B/Lee/1940) GN=HA PE=3 SV=1
          Length = 584

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 326 CKDGSCEVKVQ--ESDNTTTVQMKLDQSNESAFTATINGVTSYISS 195
           C +G  ++ V    SD+ T ++     SN   FT++ NGVT++  S
Sbjct: 195 CSEGEDQITVWGFHSDDKTQMERLYGDSNPQKFTSSANGVTTHYVS 240


>sp|P35889|DNAA_MYCMY Chromosomal replication initiator protein dnaA
           (Fragment) OS=Mycoplasma mycoides GN=dnaA PE=3 SV=2
          Length = 263

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = -3

Query: 305 VKVQESDN-TTTVQMKLDQSNES----AFTATINGVTSYISSSFYK-KDCVDYVDIWFND 144
           + +Q+ DN T T  +K +  N++      +  IN +++Y S    K K  V  ++ W   
Sbjct: 122 IAIQKLDNKTATAIIKKEIKNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQ 181

Query: 143 NHHEFLLVKQVVDAETRDIEPS 78
           N  E ++  +++    RDI  S
Sbjct: 182 NPEEKIITIEIISDLFRDIPTS 203


>sp|Q67379|HEMA_INBTF Hemagglutinin (Fragment) OS=Influenza B virus
           (strain B/Texas/4/1990) GN=HA PE=3 SV=1
          Length = 360

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 326 CKDGSCEVKVQ--ESDNTTTVQMKLDQSNESAFTATINGVTSYISS 195
           C  G  ++ V    SDN T ++     SN   FT++ NGVT++  S
Sbjct: 194 CTKGEDQITVWGFHSDNKTQMKNLYGDSNPQKFTSSANGVTTHYVS 239


>sp|Q67375|HEMA_INBP9 Hemagglutinin (Fragment) OS=Influenza B virus
           (strain B/Panama/45/1990) GN=HA PE=3 SV=1
          Length = 360

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 326 CKDGSCEVKVQ--ESDNTTTVQMKLDQSNESAFTATINGVTSYISS 195
           C  G  ++ V    SDN T ++     SN   FT++ NGVT++  S
Sbjct: 194 CTKGEDQITVWGFHSDNKTQMKNLYGDSNPQKFTSSANGVTTHYVS 239


>sp|Q67374|HEMA_INBNY Hemagglutinin (Fragment) OS=Influenza B virus
           (strain B/New York/3/1990) GN=HA PE=3 SV=1
          Length = 360

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 326 CKDGSCEVKVQ--ESDNTTTVQMKLDQSNESAFTATINGVTSYISS 195
           C  G  ++ V    SDN T ++     SN   FT++ NGVT++  S
Sbjct: 194 CTKGEDQITVWGFHSDNKTQMKNLYGDSNPQKFTSSANGVTTHYVS 239
tr_hit_id Q0IM20
Definition tr|Q0IM20|Q0IM20_ORYSJ Os12g0605800 protein OS=Oryza sativa subsp. japonica
Align length 111
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915441|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F01.
         (346 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0IM20|Q0IM20_ORYSJ Os12g0605800 protein OS=Oryza sativa subs...    49   2e-04
tr|A3CJ84|A3CJ84_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|B8BMW3|B8BMW3_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|Q40121|Q40121_SOLLC Biotin-containing subunit of methylcroton...    42   0.015
tr|B6SKB7|B6SKB7_MAIZE Methylcrotonoyl-CoA carboxylase subunit a...    42   0.015
tr|A7PUE1|A7PUE1_VITVI Chromosome chr7 scaffold_31, whole genome...    40   0.044
tr|Q4UBR0|Q4UBR0_THEAN Putative uncharacterized protein OS=Theil...    33   5.4  
tr|A6C3Q6|A6C3Q6_9PLAN Putative uncharacterized protein OS=Planc...    33   7.1  

>tr|Q0IM20|Q0IM20_ORYSJ Os12g0605800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0605800 PE=2 SV=1
          Length = 737

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -3

Query: 344 EMSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDY 165
           ++SV +  DG+  V+ ++  ++  + +K+D   +  F   + G+ + ++ +FY KD  ++
Sbjct: 566 KLSVTYRSDGTYFVETEDG-SSPGLDVKVDSRGDHDFRVDVGGLQTDVTLAFYSKDNCNH 624

Query: 164 VDIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           + IW   +HH +   +Q + AE    + S   +S +A++  HP G V AP+
Sbjct: 625 IHIWHGKHHHHY---RQTLRAEQSPDDSSQPSASSEARS--HPKGSVLAPM 670


>tr|A3CJ84|A3CJ84_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035356 PE=4 SV=1
          Length = 756

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -3

Query: 344 EMSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDY 165
           ++SV +  DG+  V+ ++  ++  + +K+D   +  F   + G+ + ++ +FY KD  ++
Sbjct: 585 KLSVTYRSDGTYFVETEDG-SSPGLDVKVDSRGDHDFRVDVGGLQTDVTLAFYSKDNCNH 643

Query: 164 VDIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           + IW   +HH +   +Q + AE    + S   +S +A++  HP G V AP+
Sbjct: 644 IHIWHGKHHHHY---RQTLRAEQSPDDSSQPSASSEARS--HPKGSVLAPM 689


>tr|B8BMW3|B8BMW3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39029 PE=4 SV=1
          Length = 740

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
 Frame = -3

Query: 344 EMSVAFCKDGSCEVKVQESDNTTT--VQMKLDQSNESAFTATINGVTSYISSSFYKKDCV 171
           ++SV +  DG+      E+++ ++  + +K+D   +  F   + G+ + ++ +FY KD  
Sbjct: 566 KLSVTYRSDGTYGTYFVETEDGSSPGLDVKVDSRGDHDFRVDVGGLQTDVTLAFYSKDNC 625

Query: 170 DYVDIWFNDNHHEFLLVKQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           +++ IW   +HH +   +Q + AE    + S   +S +A++  HP G V AP+
Sbjct: 626 NHIHIWHGKHHHHY---RQTLRAEQSPDDSSQPSASSEARS--HPKGSVLAPM 673


>tr|Q40121|Q40121_SOLLC Biotin-containing subunit of
           methylcrotonyl-CoA carboxylase (Fragment) OS=Solanum
           lycopersicum PE=2 SV=1
          Length = 436

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 23/105 (21%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
 Frame = -3

Query: 341 MSVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYV 162
           +S+ +  DG   V+  ES N+  +++++ Q + + +   ++G +  +  + Y KD ++++
Sbjct: 270 VSITYLPDGKYLVETGES-NSPGLEIQVTQLSNNDYRVEVDGHSLNVCLAAYSKDQIEHI 328

Query: 161 DIWFNDNHHEF--LLVKQVVDAETRDIEPSGFQSSQKAKTGMHPL 33
            IW  D+ H+F   +  ++ D E    +P+   +S  + T + P+
Sbjct: 329 HIWHGDSQHQFKQRMGLEIYDDEETIDKPARVATSYPSGTVIAPM 373


>tr|B6SKB7|B6SKB7_MAIZE Methylcrotonoyl-CoA carboxylase subunit
           alpha OS=Zea mays PE=2 SV=1
          Length = 751

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = -3

Query: 299 VQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYVDIWFNDNHHEFLLV 120
           ++  D T+ + +K+D   +  F   ++G+ + ++ + Y K    ++ +W  ++HH +   
Sbjct: 594 IETEDGTSGLDVKVDHKGDHDFRVDVSGLQTDVTLASYSKGNSKHIHVWHGNHHHHY--- 650

Query: 119 KQVVDAETRDIEPSGFQSSQKAKTGMHPLG-VHAPL 15
           +Q V AE   +E S  Q S  ++   HP G V AP+
Sbjct: 651 RQTVRAE-HAVEDSS-QPSHASEGKSHPKGSVLAPM 684


>tr|A7PUE1|A7PUE1_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023766001
           PE=4 SV=1
          Length = 714

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = -3

Query: 338 SVAFCKDGSCEVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYVD 159
           S+ F  DG+  ++  E +N+   ++K+     S F   ++GV+  +S + Y KD   +  
Sbjct: 538 SITFQPDGNYLIETGE-ENSPDWEVKVAHLGNSDFRVEVDGVSRDVSLAVYSKDQTKHFH 596

Query: 158 IWFNDNHHEF 129
           IW   +HH F
Sbjct: 597 IWHGSHHHTF 606


>tr|Q4UBR0|Q4UBR0_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA05020 PE=4 SV=1
          Length = 630

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -3

Query: 275 TVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYVDIWFNDNHHEFLLVKQVVDAET 96
           T++   ++     F   ++ + S   S+ +K  CV + D ++ND +  FL+ K +     
Sbjct: 48  TIESYKEKCLALCFVVNVSFINSVTESALFKSLCVSFFDKYYNDQYEPFLIFKFLTSNFK 107

Query: 95  RDIEPSGFQSSQKAK 51
             +E S  + S   K
Sbjct: 108 PTVEYSYIKMSSLKK 122


>tr|A6C3Q6|A6C3Q6_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_26825 PE=4
           SV=1
          Length = 462

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 308 EVKVQESDNTTTVQMKLDQSNESAFTATINGVTSYISSSFYKKDCVDYVDIWFNDNHH 135
           E+K+ E D  +     +   N  AF      V +YI S+    + V Y ++ FND HH
Sbjct: 284 EIKIPEGDKRSEYMQVMCDLNVLAFQTDTTRVCTYIGST---PNGVSYPELGFNDQHH 338