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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915447
Clone id YMU001_000071_F07
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCAAAGTAAACTGCAAGGTACCATACAGTCTCTCTAATGTCCTGGACCGGACAGACCA
CTACTGCTAGGTCTGACTACTGAAAACATACAAACAACTGAGCCTCCATAACATGCCTCA
CCGTAAAATCAGACAATAGAAACCTCACCGGTTTCTGGCCCAAGTGACTGCAGCAAACCC
ACTTCACAACGTATGTTTACACCCACCGACGACAGCTGCCACAAAACCTTGAGACAAACA
CTGGAACAAAAACAAAAGGCCCCACACACAGCTGAGTTCGTGACCACTGGCATCGCTTTC
CTTGTTAGTTGCCCAAGAAAATATTCTACTGCAAACTGAAAATATCTGCCAACCAACATG
GACGACACGACCATCTGTGACAGAAACTGTGACAAAAGAGCAAAAGCACTGTGGCACTGG
ACCTTGAACTGGCATAAAACATCCATAACCTTGAACTGACACAAACATCCATACCATGAT
GGCTGTCCAACAGATCAATACTTTGTGTCCTCACTGCACTCAAAACACGATCCCAAAAAA
CATAATATTCTGATAAAACTAACTGAACAGTAAACAATG
■■Homology search results ■■ -
sp_hit_id Q0AYB2
Definition sp|Q0AYB2|MUTL_SYNWW DNA mismatch repair protein mutL OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
Align length 59
Score (bit) 33.9
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915447|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F07.
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0AYB2|MUTL_SYNWW DNA mismatch repair protein mutL OS=Syntrop...    34   0.60 
sp|P38659|PDIA4_RAT Protein disulfide-isomerase A4 OS=Rattus nor...    33   0.79 
sp|Q8C7R7|RFX6_MOUSE DNA-binding protein RFX6 OS=Mus musculus GN...    33   1.0  
sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN...    33   1.0  
sp|Q2TL60|ZN667_MOUSE Zinc finger protein 667 OS=Mus musculus GN...    33   1.3  
sp|Q62865|PDE3A_RAT cGMP-inhibited 3',5'-cyclic phosphodiesteras...    32   2.3  
sp|P13667|PDIA4_HUMAN Protein disulfide-isomerase A4 OS=Homo sap...    32   3.0  
sp|Q923J1|TRPM7_MOUSE Transient receptor potential cation channe...    31   3.9  
sp|Q29RV1|PDIA4_BOVIN Protein disulfide-isomerase A4 OS=Bos taur...    31   3.9  
sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=2 SV=1    31   5.1  
sp|P08003|PDIA4_MOUSE Protein disulfide-isomerase A4 OS=Mus musc...    31   5.1  
sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel ...    30   6.7  
sp|Q5MYW4|ZN667_RAT Zinc finger protein 667 OS=Rattus norvegicus...    30   8.7  

>sp|Q0AYB2|MUTL_SYNWW DNA mismatch repair protein mutL
           OS=Syntrophomonas wolfei subsp. wolfei (strain
           Goettingen) GN=mutL PE=3 SV=1
          Length = 584

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 571 TVQLVLSEYYVF---WDRVLSAVRTQSIDLLDSHHGMDVCVSSRLWMFYASSRSSATVL 404
           +V  V  E+ +    WD  +   + Q+++++D H   +  + SRL  FYA+SR    +L
Sbjct: 394 SVSRVYDEFKILGQLWDSYILLEKEQTLNIVDQHAAHERIIYSRLQQFYAASRGEMQML 452


>sp|P38659|PDIA4_RAT Protein disulfide-isomerase A4 OS=Rattus
           norvegicus GN=Pdia4 PE=1 SV=2
          Length = 643

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 314 QENILLQTENICQPTWTTRPSVTETVTKE 400
           QE I+ +   + QP WT  P VT T+TKE
Sbjct: 155 QEEIVAKVREVSQPDWTPPPEVTLTLTKE 183


>sp|Q8C7R7|RFX6_MOUSE DNA-binding protein RFX6 OS=Mus musculus
           GN=Rfx6 PE=2 SV=2
          Length = 927

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -2

Query: 476 WYGCLCQFKVMDVLCQFKVQCHSAFALLSQFLSQMVVSSMLVGRY--FQFAVEYFLGQLT 303
           + GC+ + KV  ++  +K  C            Q ++ + + G +   Q  + +F   + 
Sbjct: 251 YQGCISKDKVDTLIMMYKTHC------------QCILDNAINGNFEEIQHFLLHFWQGMP 298

Query: 302 RKAMPVVTNSAVCGAFCFCSSVCLKVL 222
              +P++ N  +   FC C S+  KVL
Sbjct: 299 DHLLPLLENPVIIDIFCVCDSILYKVL 325


>sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens
           GN=RFX6 PE=2 SV=2
          Length = 928

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -2

Query: 476 WYGCLCQFKVMDVLCQFKVQCHSAFALLSQFLSQMVVSSMLVGRY--FQFAVEYFLGQLT 303
           + GC+ + KV  ++  +K  C            Q ++ + + G +   Q  + +F   + 
Sbjct: 252 YQGCISKDKVDTLIMMYKTHC------------QCILDNAINGNFEEIQHFLLHFWQGMP 299

Query: 302 RKAMPVVTNSAVCGAFCFCSSVCLKVL 222
              +P++ N  +   FC C S+  KVL
Sbjct: 300 DHLLPLLENPVIIDIFCVCDSILYKVL 326


>sp|Q2TL60|ZN667_MOUSE Zinc finger protein 667 OS=Mus musculus
           GN=Znf667 PE=1 SV=1
          Length = 609

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 154 SGPSDCSKPTSQRMFTPTDDSCHKTLRQTLEQKQKAPHTAE 276
           SGPS C KPTS +   PT+ + H   + ++  K K  H+ +
Sbjct: 103 SGPSICEKPTSSQQKVPTEKAKHN--KSSVPSKSKKEHSGK 141


>sp|Q62865|PDE3A_RAT cGMP-inhibited 3',5'-cyclic phosphodiesterase A
           OS=Rattus norvegicus GN=Pde3a PE=2 SV=1
          Length = 1141

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = +1

Query: 103 PP*HASP*NQTIETSPVSGPSDCSKPTSQRMFTPTDDSCHKTLRQTLEQKQKAPHTAEFV 282
           P   +SP   +  +SPVSG +    P S  + T      H+ L  T    Q AP  +  +
Sbjct: 523 PSPSSSPPQGSPTSSPVSGIASVQFPESPEVTTKRGPGSHRALTYT----QSAPDLSPQI 578

Query: 283 TTGIAFLVSCPRKYSTAN 336
                   SC R YS  N
Sbjct: 579 PPSPVICSSCGRPYSQGN 596


>sp|P13667|PDIA4_HUMAN Protein disulfide-isomerase A4 OS=Homo
           sapiens GN=PDIA4 PE=1 SV=2
          Length = 645

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 QENILLQTENICQPTWTTRPSVTETVTKE 400
           QE I+ +   + QP WT  P VT  +TKE
Sbjct: 157 QEEIVAKVREVSQPDWTPPPEVTLVLTKE 185


>sp|Q923J1|TRPM7_MOUSE Transient receptor potential cation channel
            subfamily M member 7 OS=Mus musculus GN=Trpm7 PE=1 SV=1
          Length = 1863

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 127  NQTIETSPVSGPSDCSKPTSQRMFTPTDDSCHKTLRQTLEQKQ 255
            NQ + +SP S P   S PT   + TP+  SC   L  T + ++
Sbjct: 1380 NQKLGSSPNSSPHMSSPPTKFSVSTPSQPSCKSHLESTTKDQE 1422


>sp|Q29RV1|PDIA4_BOVIN Protein disulfide-isomerase A4 OS=Bos taurus
           GN=PDIA4 PE=2 SV=1
          Length = 643

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 314 QENILLQTENICQPTWTTRPSVTETVTKE 400
           QE I+ + + + QP WT  P VT  +TK+
Sbjct: 156 QEEIVAKVKEVSQPNWTPPPEVTLVLTKD 184


>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=2 SV=1
          Length = 4293

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 463  CVSSRLWMFYASSRSSATVLLLFCHSFCHRWSCRPCWLADIFS 335
            CVS +    Y  SRSS   L   CH+ C R   + CW A  FS
Sbjct: 2366 CVSCKAQAVYEVSRSSYVYLEGHCHN-CSRGYKQGCWAARTFS 2407
tr_hit_id B0EUQ8
Definition tr|B0EUQ8|B0EUQ8_ENTDI Putative uncharacterized protein OS=Entamoeba dispar SAW760
Align length 73
Score (bit) 27.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915447|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F07.
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0EUQ8|B0EUQ8_ENTDI Putative uncharacterized protein OS=Entam...    28   1.5  
tr|B0BNK5|B0BNK5_RAT Pde4c protein OS=Rattus norvegicus GN=Pde4c...    35   2.3  
tr|B6SW64|B6SW64_MAIZE Protein HOTHEAD OS=Zea mays PE=2 SV=1           34   5.2  
tr|A0E1J6|A0E1J6_PARTE Chromosome undetermined scaffold_73, whol...    34   6.7  
tr|P87519|P87519_BHV4 GP80 OS=Bovine herpesvirus 4 GN=Bo10 PE=4 ...    34   6.8  
tr|A1SS36|A1SS36_PSYIN O-antigen polymerase OS=Psychromonas ingr...    34   6.8  

>tr|B0EUQ8|B0EUQ8_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_182950 PE=4 SV=1
          Length = 617

 Score = 27.7 bits (60), Expect(2) = 1.5
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -2

Query: 323 YFLGQLTRKAMPVVTNSAVCGAFCFCSSV-CLKVLWQLSSVGVNIRCEVGLLQSLGPETG 147
           Y    +T   +P   N    G FC C+S+  + +   ++S+G     E   LQ++   T 
Sbjct: 410 YGCSSITTINIPTSINEIGYGCFCKCTSLTTINIPTSITSIGKECFSECSSLQTIDIPTS 469

Query: 146 EVSIV*FYGEACY 108
            + I    G  C+
Sbjct: 470 VIEI----GNCCF 478



 Score = 26.6 bits (57), Expect(2) = 1.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 486 TAIMVWMFVSVQGYGCFMPVQGPVPQCFCSFVTVSVTDGRVVHVGWQIFSVCSRI 322
           T I +   ++  GYGCF         C C+ +T       +  +G + FS CS +
Sbjct: 324 TTINIPTSINEIGYGCF---------CKCTSLTTINIPTSITSIGKECFSECSSL 369


>tr|B0BNK5|B0BNK5_RAT Pde4c protein OS=Rattus norvegicus GN=Pde4c
           PE=2 SV=1
          Length = 220

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +1

Query: 76  TTENIQTTEPP*HASP*NQTIETSPVSGPSDCSKPTSQRMFTPTDDSCHKTLRQTLEQKQ 255
           TTE+IQTT     ++P +Q+ ET+P S     + P+       T  S H +   T  +  
Sbjct: 47  TTESIQTT-----SNPTSQSTETTPAS-----TSPSLHPTILETTSSPHSSSNPTSLETI 96

Query: 256 KAPHTAEFVTTGIA 297
            +PH++ + T+G A
Sbjct: 97  SSPHSSSYPTSGSA 110


>tr|B6SW64|B6SW64_MAIZE Protein HOTHEAD OS=Zea mays PE=2 SV=1
          Length = 580

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 235 QTLEQKQKAPHTAEFVTTGIAFLVSCPRKYS-TAN*KYLPTNMDDTTICDRNCDKRAKAL 411
           QT+E+  K  H A     G  + +      S +AN   +P + DDTT  ++ C      +
Sbjct: 454 QTIERILKTNHFANLTANGAGYPMETLLNLSVSANINLIPKHTDDTTSLEQFCRDTVTTI 513

Query: 412 WHW 420
           WH+
Sbjct: 514 WHY 516


>tr|A0E1J6|A0E1J6_PARTE Chromosome undetermined scaffold_73, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00022333001 PE=4 SV=1
          Length = 2852

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 559 VLSEYYVFWDRVLSAVRTQSIDLLDSHHGMDVCVSSRLWMFYA 431
           +LS YY+      S ++T S+DL   ++G+D C S  LW  Y+
Sbjct: 13  LLSAYYIIGMNEDSQIQTYSLDLNIQNYGIDSCFSYGLWSRYS 55


>tr|P87519|P87519_BHV4 GP80 OS=Bovine herpesvirus 4 GN=Bo10 PE=4
           SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 3/162 (1%)
 Frame = +1

Query: 76  TTENIQTTEPP*HASP*NQTIETS-PVSGPSDCSKPTSQRMFTPTDDSCHKTLRQTLEQK 252
           +T ++ +  P   + P   T  +S P S P+  +   +    T T  S   T+  T  Q 
Sbjct: 58  STSSVSSPSPSSSSVPSTATSSSSSPTSTPTATTTTATSSTSTNTTSSVSTTVSSTASQS 117

Query: 253 QKAPHTAEFVTTGIAFLVSCPRKYSTAN*KYLPTNMDDTTICDRNCDKRAKALWHWTLNW 432
                T+   TT      S P   +T++   + T +  T   +      A      T N 
Sbjct: 118 TTLTSTSTNQTTNTTTTSSTPSNTTTSS---VSTAVSSTESPNTTLTSTAPTNQTTTTNN 174

Query: 433 HKTSITLN*H--KHPYHDGCPTDQYFVSSLHSKHDPKKHNIL 552
              + T N    + P      T  Y  +S H K DP + N+L
Sbjct: 175 SSGTQTSNTSSTQPPTSQSLDTSTYVTTSKHPKTDPTRKNVL 216


>tr|A1SS36|A1SS36_PSYIN O-antigen polymerase OS=Psychromonas
           ingrahamii (strain 37) GN=Ping_0442 PE=3 SV=1
          Length = 472

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 489 WTAIMVWMFVSVQGYGCFMPVQGPVPQCFCSFVTVSVTDGRVVHVGWQIFSVCSRIFSW 313
           W    +   VS + Y   +     +P CF  F+ +++T GR  +V W I  +   +F W
Sbjct: 214 WVIFCLKELVSTKHYWLLI-----LPSCFIVFLAMALTGGRTGYVTWAILGIFYCLFKW 267