BP915448 |
Clone id |
YMU001_000071_F08 |
Library |
YMU01 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000071_F08. |
Accession |
BP915448 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGGCAAGGTGGTGACAACCACCATCAACCATAGATTGGATCATTGGTTGCACTAGCTCCA GGAGTTACTGAGCTCGCCAGGTCCATCCTTCTCTTGAGTCATCGTGTCTCATTCCCTTAT TGGGATCACGAGCCGTTCGTCCATCTTTCTCTCTACCTCCTCCATCACACATTCTGACAT AGTATCAGAGCTCAAGGTGCTCATTGTGAGAAATCCCTTTGCTTGCTCTTCCTTCCACCT AGCATATTCCCTTCTCTGCCTTGAACGAAGCTTGGCATCTTCTGTTGCACACTCTGACAT GGTGTTAGAGGTGTTTCATTGAGAGAACTCCCTTCGCCTGCTCTCCCTTCAACACAAGCC CTTGGCCTTTCCTCATCACAAATGCTGCTGCAGCCTTTCTGTCGCAGCGTGGGCCAGCGA TCATCTGTGGGCTGTGCTCCAACCGTCCAACATGAGCTATCTGACAGAGGCAGCCATCTG CGTTCTCTCTCTACCTGGGGCAACGTTCTTTCTACATACAGAGCTTCTCTGCCTTGGGCT TCGGCGACTCTTCTGGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6W4X9 |
Definition |
sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens |
Align length |
80 |
Score (bit) |
32.7 |
E-value |
1.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915448|Adiantum capillus-veneris mRNA, clone: YMU001_000071_F08. (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2 33 1.2 sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptid... 32 2.1 sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptid... 32 2.1 sp|Q5WCP8|HUTI_BACSK Imidazolonepropionase OS=Bacillus clausii (... 32 2.1 sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1 OS=... 32 2.7 sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein... 32 2.7 sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-lik... 32 2.7 sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556 sub... 32 2.7 sp|P28284|ICP0_HHV2H Trans-acting transcriptional protein ICP0 O... 31 3.6 sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease prote... 31 4.7 sp|Q9YAN6|FLAB2_AERPE Probable flagellin 2 OS=Aeropyrum pernix G... 31 4.7 sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 sub... 30 6.1 sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 sub... 30 6.1 sp|Q68XP1|DHSC_RICTY Succinate dehydrogenase cytochrome b556 sub... 30 8.0 sp|Q1RHB5|DHSC_RICBR Succinate dehydrogenase cytochrome b556 sub... 30 8.0
>sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2 Length = 2392
Score = 32.7 bits (73), Expect = 1.2 Identities = 32/80 (40%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Frame = +1
Query: 331 PSPALPSTQALGLSSSQMLLQPFCRSVGQRSSVGCAPTVQHELSDRGSHLRSLSTWGNVL 510 PSP+ PST + + SS Q SVG SS AP LS GSH SLST Sbjct: 2086 PSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSS-GSH-SSLSTHPTTA 2143
Query: 511 STYRASL----PWASATLLA 558 S + L P AS T+ A Sbjct: 2144 SVSASPLFPSSPAASTTIRA 2163
>sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptide 4 OS=Mus musculus GN=Gtf3c4 PE=2 SV=1 Length = 817
Score = 32.0 bits (71), Expect = 2.1 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2
Query: 326 NSLRLLSLQHKPLAFPHHKCCCSLSVAAWASDHLWAVL 439 + L + S++ PL P+ KC CSL VAA S W +L Sbjct: 363 DKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLL 400
>sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptide 4 OS=Homo sapiens GN=GTF3C4 PE=1 SV=2 Length = 822
Score = 32.0 bits (71), Expect = 2.1 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2
Query: 326 NSLRLLSLQHKPLAFPHHKCCCSLSVAAWASDHLWAVL 439 + L + S++ PL P+ KC CSL VAA S W +L Sbjct: 367 DQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLL 404
>sp|Q5WCP8|HUTI_BACSK Imidazolonepropionase OS=Bacillus clausii (strain KSM-K16) GN=hutI PE=3 SV=1 Length = 447
Score = 32.0 bits (71), Expect = 2.1 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +2
Query: 401 VAAWASDHLWAVLQPSNMSYLTEAAICVLSLPGATFFLHTE 523 V A ++DHL P+ + + EA + + LPG FFL TE Sbjct: 271 VGAVSADHLLKA-SPTGIEQMAEAGVIAVLLPGTAFFLMTE 310
>sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1 OS=Homo sapiens GN=TP53BP1 PE=1 SV=2 Length = 1972
Score = 31.6 bits (70), Expect = 2.7 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = -2
Query: 413 PTLRQKGCSSICDEERPRACVEGRAGEGSS---LNETPLTPCQSVQQKM 276 P R + SS+ D+E E EGSS + E P TPC+S +++ Sbjct: 631 PATRSEALSSVLDQEEAMEIKEHHPEEGSSGSEVEEIPETPCESQGEEL 679
>sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein 1 OS=Mus musculus GN=Urb1 PE=2 SV=2 Length = 2274
Score = 31.6 bits (70), Expect = 2.7 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Frame = +2
Query: 215 PFACSSFHLAYSLLCLERSLASSVAHSDMVLEVFH*ENSLRLLS---LQHKPLAFPHHKC 385 P C S H A L +L+ ++L + +N+L L+S L P A HHK Sbjct: 1515 PSVCQSSHFAVLLGTYSATLSVLDQKILLLLRAYE-QNNLSLISFRVLLWGPAAVEHHKT 1573
Query: 386 CCSLSVAAWASDHLWAVLQ 442 C SL + W + +L+ Sbjct: 1574 CRSLGKSLWQQPSVGDILR 1592
>sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-like ENSP00000375148 OS=Homo sapiens PE=3 SV=1 Length = 341
Score = 31.6 bits (70), Expect = 2.7 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = -2
Query: 458 SSCWTV-GAQPTDDRWPTLRQKGCSSICDEERPRACVEGRAGEGSSLNETPLTPCQ 294 +SC TV QPT D P+ Q GC S C CV G SS + T CQ Sbjct: 280 ASCDTVISGQPTCDGPPSYNQSGCKSAC-------CVTGLGTSPSSGSNCLPTSCQ 328
>sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia felis GN=sdhC PE=3 SV=1 Length = 124
Score = 31.6 bits (70), Expect = 2.7 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2
Query: 392 SLSVAAWASDHLWAVLQPSNMSYLTEAAICVLSL----PGATFFLHTELLCLGLRRLFW 556 ++S+ AW W +L + +YL A C++ + +F H LC G+R LFW Sbjct: 43 AVSILAW-----WLILSKYDNNYLQFANCCIIKICLVAVSYAWFYH---LCNGIRHLFW 93
>sp|P28284|ICP0_HHV2H Trans-acting transcriptional protein ICP0 OS=Human herpesvirus 2 (strain HG52) GN=RL2 PE=4 SV=1 Length = 825
Score = 31.2 bits (69), Expect = 3.6 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1
Query: 331 PSPALPSTQALGLSSSQMLLQPFCRSVGQRSSVGCAPTVQHELSDRGSHLRSLSTWGNVL 510 P+P L + SS + L P+ V + + C P + E G+++ + GNV Sbjct: 680 PAPGLTRYLPIAGVSSVVALAPY---VNKTVTGDCLPVLDMETGHIGAYVVLVDQTGNVA 736
Query: 511 STYRASLP-WASATLL 555 RA+ P W+ TLL Sbjct: 737 DLLRAAAPAWSRRTLL 752
>sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease protein macB OS=Pasteurella multocida GN=macB PE=3 SV=1 Length = 649
Score = 30.8 bits (68), Expect = 4.7 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Frame = -3
Query: 487 ENADGCLCQIAHVGRLEHSPQMIAGPRCDRKAAAAFVMRKGQGLV-------LKGEQAKG 329 E A LC++ +L+H P ++G + R + A +M G+ ++ L + ++ Sbjct: 125 ERAQKLLCRLGLENQLKHKPSQLSGGQQQRVSIARALMNGGEIILADEPTGALDSQSSQE 184
Query: 328 VLS----MKHL*HHVRVCNRRCQASFKAEKGIC*VEGR--ASKGISHN 203 VLS + H H V + Q + A++ I +G A G++ N Sbjct: 185 VLSVLKTLNHQGHTVVLITHDMQIASHADRIITMKDGEIIADSGVTQN 232
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8AFX3 |
Definition |
tr|B8AFX3|B8AFX3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
Align length |
95 |
Score (bit) |
35.0 |
E-value |
2.7 |
Report |
|