BP915448
Clone id YMU001_000071_F08
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGCAAGGTGGTGACAACCACCATCAACCATAGATTGGATCATTGGTTGCACTAGCTCCA
GGAGTTACTGAGCTCGCCAGGTCCATCCTTCTCTTGAGTCATCGTGTCTCATTCCCTTAT
TGGGATCACGAGCCGTTCGTCCATCTTTCTCTCTACCTCCTCCATCACACATTCTGACAT
AGTATCAGAGCTCAAGGTGCTCATTGTGAGAAATCCCTTTGCTTGCTCTTCCTTCCACCT
AGCATATTCCCTTCTCTGCCTTGAACGAAGCTTGGCATCTTCTGTTGCACACTCTGACAT
GGTGTTAGAGGTGTTTCATTGAGAGAACTCCCTTCGCCTGCTCTCCCTTCAACACAAGCC
CTTGGCCTTTCCTCATCACAAATGCTGCTGCAGCCTTTCTGTCGCAGCGTGGGCCAGCGA
TCATCTGTGGGCTGTGCTCCAACCGTCCAACATGAGCTATCTGACAGAGGCAGCCATCTG
CGTTCTCTCTCTACCTGGGGCAACGTTCTTTCTACATACAGAGCTTCTCTGCCTTGGGCT
TCGGCGACTCTTCTGGCT
■■Homology search results ■■ -
sp_hit_id Q6W4X9
Definition sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens
Align length 80
Score (bit) 32.7
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915448|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F08.
(558 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2 33 1.2
sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptid... 32 2.1
sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptid... 32 2.1
sp|Q5WCP8|HUTI_BACSK Imidazolonepropionase OS=Bacillus clausii (... 32 2.1
sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1 OS=... 32 2.7
sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein... 32 2.7
sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-lik... 32 2.7
sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556 sub... 32 2.7
sp|P28284|ICP0_HHV2H Trans-acting transcriptional protein ICP0 O... 31 3.6
sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease prote... 31 4.7
sp|Q9YAN6|FLAB2_AERPE Probable flagellin 2 OS=Aeropyrum pernix G... 31 4.7
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 sub... 30 6.1
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 sub... 30 6.1
sp|Q68XP1|DHSC_RICTY Succinate dehydrogenase cytochrome b556 sub... 30 8.0
sp|Q1RHB5|DHSC_RICBR Succinate dehydrogenase cytochrome b556 sub... 30 8.0

>sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2
Length = 2392

Score = 32.7 bits (73), Expect = 1.2
Identities = 32/80 (40%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +1

Query: 331 PSPALPSTQALGLSSSQMLLQPFCRSVGQRSSVGCAPTVQHELSDRGSHLRSLSTWGNVL 510
PSP+ PST + + SS Q SVG SS AP LS GSH SLST
Sbjct: 2086 PSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSS-GSH-SSLSTHPTTA 2143

Query: 511 STYRASL----PWASATLLA 558
S + L P AS T+ A
Sbjct: 2144 SVSASPLFPSSPAASTTIRA 2163


>sp|Q8BMQ2|TF3C4_MOUSE General transcription factor 3C polypeptide 4
OS=Mus musculus GN=Gtf3c4 PE=2 SV=1
Length = 817

Score = 32.0 bits (71), Expect = 2.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2

Query: 326 NSLRLLSLQHKPLAFPHHKCCCSLSVAAWASDHLWAVL 439
+ L + S++ PL P+ KC CSL VAA S W +L
Sbjct: 363 DKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLL 400


>sp|Q9UKN8|TF3C4_HUMAN General transcription factor 3C polypeptide 4
OS=Homo sapiens GN=GTF3C4 PE=1 SV=2
Length = 822

Score = 32.0 bits (71), Expect = 2.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2

Query: 326 NSLRLLSLQHKPLAFPHHKCCCSLSVAAWASDHLWAVL 439
+ L + S++ PL P+ KC CSL VAA S W +L
Sbjct: 367 DQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLL 404


>sp|Q5WCP8|HUTI_BACSK Imidazolonepropionase OS=Bacillus clausii
(strain KSM-K16) GN=hutI PE=3 SV=1
Length = 447

Score = 32.0 bits (71), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2

Query: 401 VAAWASDHLWAVLQPSNMSYLTEAAICVLSLPGATFFLHTE 523
V A ++DHL P+ + + EA + + LPG FFL TE
Sbjct: 271 VGAVSADHLLKA-SPTGIEQMAEAGVIAVLLPGTAFFLMTE 310


>sp|Q12888|TP53B_HUMAN Tumor suppressor p53-binding protein 1
OS=Homo sapiens GN=TP53BP1 PE=1 SV=2
Length = 1972

Score = 31.6 bits (70), Expect = 2.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2

Query: 413 PTLRQKGCSSICDEERPRACVEGRAGEGSS---LNETPLTPCQSVQQKM 276
P R + SS+ D+E E EGSS + E P TPC+S +++
Sbjct: 631 PATRSEALSSVLDQEEAMEIKEHHPEEGSSGSEVEEIPETPCESQGEEL 679


>sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein 1
OS=Mus musculus GN=Urb1 PE=2 SV=2
Length = 2274

Score = 31.6 bits (70), Expect = 2.7
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2

Query: 215 PFACSSFHLAYSLLCLERSLASSVAHSDMVLEVFH*ENSLRLLS---LQHKPLAFPHHKC 385
P C S H A L +L+ ++L + +N+L L+S L P A HHK
Sbjct: 1515 PSVCQSSHFAVLLGTYSATLSVLDQKILLLLRAYE-QNNLSLISFRVLLWGPAAVEHHKT 1573

Query: 386 CCSLSVAAWASDHLWAVLQ 442
C SL + W + +L+
Sbjct: 1574 CRSLGKSLWQQPSVGDILR 1592


>sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-like
ENSP00000375148 OS=Homo sapiens PE=3 SV=1
Length = 341

Score = 31.6 bits (70), Expect = 2.7
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2

Query: 458 SSCWTV-GAQPTDDRWPTLRQKGCSSICDEERPRACVEGRAGEGSSLNETPLTPCQ 294
+SC TV QPT D P+ Q GC S C CV G SS + T CQ
Sbjct: 280 ASCDTVISGQPTCDGPPSYNQSGCKSAC-------CVTGLGTSPSSGSNCLPTSCQ 328


>sp|Q4UKC1|DHSC_RICFE Succinate dehydrogenase cytochrome b556
subunit OS=Rickettsia felis GN=sdhC PE=3 SV=1
Length = 124

Score = 31.6 bits (70), Expect = 2.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2

Query: 392 SLSVAAWASDHLWAVLQPSNMSYLTEAAICVLSL----PGATFFLHTELLCLGLRRLFW 556
++S+ AW W +L + +YL A C++ + +F H LC G+R LFW
Sbjct: 43 AVSILAW-----WLILSKYDNNYLQFANCCIIKICLVAVSYAWFYH---LCNGIRHLFW 93


>sp|P28284|ICP0_HHV2H Trans-acting transcriptional protein ICP0
OS=Human herpesvirus 2 (strain HG52) GN=RL2 PE=4 SV=1
Length = 825

Score = 31.2 bits (69), Expect = 3.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1

Query: 331 PSPALPSTQALGLSSSQMLLQPFCRSVGQRSSVGCAPTVQHELSDRGSHLRSLSTWGNVL 510
P+P L + SS + L P+ V + + C P + E G+++ + GNV
Sbjct: 680 PAPGLTRYLPIAGVSSVVALAPY---VNKTVTGDCLPVLDMETGHIGAYVVLVDQTGNVA 736

Query: 511 STYRASLP-WASATLL 555
RA+ P W+ TLL
Sbjct: 737 DLLRAAAPAWSRRTLL 752


>sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease protein
macB OS=Pasteurella multocida GN=macB PE=3 SV=1
Length = 649

Score = 30.8 bits (68), Expect = 4.7
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Frame = -3

Query: 487 ENADGCLCQIAHVGRLEHSPQMIAGPRCDRKAAAAFVMRKGQGLV-------LKGEQAKG 329
E A LC++ +L+H P ++G + R + A +M G+ ++ L + ++
Sbjct: 125 ERAQKLLCRLGLENQLKHKPSQLSGGQQQRVSIARALMNGGEIILADEPTGALDSQSSQE 184

Query: 328 VLS----MKHL*HHVRVCNRRCQASFKAEKGIC*VEGR--ASKGISHN 203
VLS + H H V + Q + A++ I +G A G++ N
Sbjct: 185 VLSVLKTLNHQGHTVVLITHDMQIASHADRIITMKDGEIIADSGVTQN 232


tr_hit_id B8AFX3
Definition tr|B8AFX3|B8AFX3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 95
Score (bit) 35.0
E-value 2.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915448|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F08.
(558 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8AFX3|B8AFX3_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.7
tr|A3GGF6|A3GGF6_PICST Putative uncharacterized protein OS=Pichi... 35 2.7
tr|A7CZC3|A7CZC3_9BACT Peptidoglycan-binding LysM (Fragment) OS=... 35 2.8
tr|B6KPF2|B6KPF2_TOXGO Putative uncharacterized protein OS=Toxop... 34 4.6
tr|B1HUW1|B1HUW1_LYSSC Sensor protein OS=Lysinibacillus sphaeric... 34 6.1

>tr|B8AFX3|B8AFX3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06855 PE=4 SV=1
Length = 144

Score = 35.0 bits (79), Expect = 2.7
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = -2

Query: 494 VERERRWLPLSDSSCWTVGAQPTDDRWPTLRQKGCSSICDEERPRACVEGRAGEGSSLNE 315
VER RR LPL++ +P DRWP L C++ + VEG E +
Sbjct: 9 VERRRRLLPLAEGES---RRRPGVDRWPPLPGPSCTAAHRVKDAAGQVEGAEAEALAAKG 65

Query: 314 TPL-TPCQSVQQKMPSFVQGREGNMLGGRKSKQRD 213
L ++ + P +V GR GGR+ +R+
Sbjct: 66 RALPAGGRAPWRATPPWVGGRWEGRDGGRRRLRRE 100


>tr|A3GGF6|A3GGF6_PICST Putative uncharacterized protein OS=Pichia
stipitis GN=PICST_66459 PE=4 SV=1
Length = 373

Score = 35.0 bits (79), Expect = 2.7
Identities = 27/82 (32%), Positives = 36/82 (43%)
Frame = -2

Query: 470 PLSDSSCWTVGAQPTDDRWPTLRQKGCSSICDEERPRACVEGRAGEGSSLNETPLTPCQS 291
PL + T +P D R P+L SS + P AC R +G TPLTP
Sbjct: 229 PLVVPTSATFRFKPVDYRTPSL--SSFSSPSFTKAPTACSSNRMSKGIYSPLTPLTPYSD 286

Query: 290 VQQKMPSFVQGREGNMLGGRKS 225
Q S ++ R+ N LG +S
Sbjct: 287 EQNYYASSIKRRKLNQLGSCQS 308


>tr|A7CZC3|A7CZC3_9BACT Peptidoglycan-binding LysM (Fragment)
OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_1146 PE=4
SV=1
Length = 117

Score = 35.0 bits (79), Expect = 2.8
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1

Query: 301 GVRGVSL--RELPSPALPSTQALGLSSSQMLLQPFCRSVGQRSSVGCAPTVQHELSDRGS 474
G+ G+SL R+ P PS QA S + + P + GQR V T+ + L+ R
Sbjct: 25 GIHGISLCSRQARRPPPPSHQASPASITPVPAAPATTARGQRHVVAKGDTL-YNLAQR-- 81

Query: 475 HLRSLSTWGNVLSTYRASLPWASATL 552
+ + S W ++L+ R LP +ATL
Sbjct: 82 YYGNRSRWRDILAANRDQLPGENATL 107


>tr|B6KPF2|B6KPF2_TOXGO Putative uncharacterized protein
OS=Toxoplasma gondii ME49 GN=TGME49_009760 PE=4 SV=1
Length = 487

Score = 34.3 bits (77), Expect = 4.6
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = -2

Query: 431 PTDDRWPTLRQKGCSSICDE----ERPRACVEGRAGEGSSLNETPLTPCQSVQQKMPSFV 264
P D++ L QK ++ + ERP A +EG G SS E P++P ++ ++ +P
Sbjct: 114 PKDEQKAALTQKEVTNPVEPRKEMERPAAPIEGEKGVVSSEEEKPVSPKEATRRILPK-- 171

Query: 263 QGREGNMLGGRKSK 222
+G+E LG RK +
Sbjct: 172 EGKES--LGTRKEE 183


>tr|B1HUW1|B1HUW1_LYSSC Sensor protein OS=Lysinibacillus sphaericus
(strain C3-41) GN=liaS PE=4 SV=1
Length = 371

Score = 33.9 bits (76), Expect = 6.1
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = -2

Query: 542 EAQGREALYVERTLPQVERERRWLPLSDSSCWTVGAQPTDDRWPTLRQKGCSSICDEERP 363
+A+GR L V LP+ + L+ CW V R+ K S+I + +R
Sbjct: 51 DAKGRSELVVHENLPEALEFKNCHYLNKGGCWCV------SRYRNEELKKASNIIECQRI 104

Query: 362 RACVEGRAGEGSSLNETPLTPCQSVQQK 279
+ + G+ + P QS Q++
Sbjct: 105 ESAIAANVGDHEGITHHATVPLQSGQER 132