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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915449
Clone id YMU001_000071_F09
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTCTGTGTTGTGTGTGTAGGAATGATTCTAGTCTCGGGCATAACCTACCCTCCTCAACC
CCGACTCATGCCTTTTTTTTTTTTGCAAAGCACAGGATTCTTTGATCTATAACGTCTCAA
GTGAAACTCAGTTCTCCTGCTATCCATAAATGCATTAGTATTTTTGAGTGGGGTATTTAG
GAAGGTAATTTTTTCACCAGCAGGTTTACTTCGCGTTTTATCTGCCCCGGATTCCTTCGG
AGGGTTAGATGATCTCCGATTCCAGGAATCTTTCCTACTCGTGCCTTGCTAGTACCTGTA
CCTTCTCGGTAATGCTTCTGATGTCCTTTCACTCCTTTCCTTTGCTTCTTCTTCTCTTTG
CTTGTGAGTGCCTTGAAAATATCATTATCACCTCACCTCACCTCACCATGAAGCATTGTT
GTCGTGACGCCCTTTCTATAACCAAGTGTGGTAGATTGGCTATGTCATTTCATTCTCCTC
TTCAATAACCCTCTTAATAGCAGGTCTTGAGTTCAATTCCTCGGCTTGATATTCATGGTC
TCTGGGATAGTTTCCTACACGT
■■Homology search results ■■ -
sp_hit_id Q9UQ35
Definition sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens
Align length 94
Score (bit) 32.0
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915449|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F09.
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    32   2.2  
sp|P52818|RL15_ANOGA 60S ribosomal protein L15 OS=Anopheles gamb...    32   2.8  
sp|A6QLY7|PBIP1_BOVIN Pre-B-cell leukemia transcription factor-i...    32   2.8  
sp|Q640L3|CCPG1_MOUSE Cell cycle progression protein 1 OS=Mus mu...    32   2.8  
sp|Q9N428|TCL2_CAEEL T-cell defective protein 2 OS=Caenorhabditi...    31   4.8  
sp|Q3V1V3|ESF1_MOUSE ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1    30   6.3  
sp|Q4IR08|ASF1_GIBZE Histone chaperone ASF1 OS=Gibberella zeae G...    30   8.2  

>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2
            OS=Homo sapiens GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 30/94 (31%), Positives = 42/94 (44%)
 Frame = -2

Query: 372  GTHKQREEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAGE 193
            G+       A++ S RTS    R       TSRK S +R S  P K S   ++R+ PA  
Sbjct: 1817 GSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRS---RSRASPATH 1873

Query: 192  KITFLNTPLKNTNAFMDSRRTEFHLRRYRSKNPV 91
            + +   TPL +      SR +    RR RS+  V
Sbjct: 1874 RRSRSRTPLISRRR-SRSRTSPVSRRRSRSRTSV 1906


>sp|P52818|RL15_ANOGA 60S ribosomal protein L15 OS=Anopheles gambiae
           GN=RpL15 PE=2 SV=3
          Length = 204

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 429 RHDNNASW*GEVR***YFQGTHKQREEEAKERSERTSEALPRRYRY*Q--GTSRKDSWNR 256
           R D N +W             HK RE      + ++S  L + YRY Q  G SR+  W R
Sbjct: 143 RRDPNVNW--------ICNAVHKHRELRGLTSAGKSSRGLGKGYRYSQTIGGSRRACWRR 194

Query: 255 RS 250
           R+
Sbjct: 195 RN 196


>sp|A6QLY7|PBIP1_BOVIN Pre-B-cell leukemia transcription
           factor-interacting protein 1 OS=Bos taurus GN=PBXIP1
           PE=2 SV=1
          Length = 727

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 357 REEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAGEK 190
           R EE +E   R  E  PR   +     +KD   +RS  PP++SG    R  P+GE+
Sbjct: 507 RGEEDRELVGRRKEGKPRVEEW---AGKKDGKQQRSKEPPRKSG----RPHPSGER 555


>sp|Q640L3|CCPG1_MOUSE Cell cycle progression protein 1 OS=Mus
           musculus GN=Ccpg1 PE=1 SV=2
          Length = 753

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -2

Query: 363 KQREEEAKERSERTSEALPRRYRY*QGTSRK--DSWNRRSSNPPKESGADKTRSKPAGEK 190
           KQ +E  KE  ++ S+++   +R+ + T++   D    +    PKE+  +KTR+  +   
Sbjct: 511 KQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFRAPKEAATEKTRTAYSYSS 570

Query: 189 ITFLNTPLKNTN 154
            +    P +N N
Sbjct: 571 YSQQEAPNQNQN 582


>sp|Q9N428|TCL2_CAEEL T-cell defective protein 2 OS=Caenorhabditis
           elegans GN=tcl-2 PE=1 SV=3
          Length = 435

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -2

Query: 318 EALPRRYRY*QGTSRKDSWNRRSSNPPKESGA-DKTR-----SKPAGEKITFLNTPLKNT 157
           EALP  +      SRK      SS PPK     D  R     S P+  K+TF  TPLK +
Sbjct: 107 EALPPGFNLFSPPSRKKIKTAFSSPPPKSMKTPDSLRKSIRISSPSPFKVTFSKTPLKLS 166

Query: 156 N 154
           N
Sbjct: 167 N 167


>sp|Q3V1V3|ESF1_MOUSE ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1
          Length = 845

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 17/77 (22%), Positives = 39/77 (50%)
 Frame = -2

Query: 363 KQREEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAGEKIT 184
           KQ++++ K+ ++   + +  + +  + T +KDS N+   N  +     K   KP  +KI 
Sbjct: 95  KQKKKQTKKEAKSIEKPIEEKKKETKKTDQKDSINKHDLNNSERVQKMKNSQKP--QKID 152

Query: 183 FLNTPLKNTNAFMDSRR 133
              +P K+   F+ +++
Sbjct: 153 SEISPKKDNEEFLQNKK 169


>sp|Q4IR08|ASF1_GIBZE Histone chaperone ASF1 OS=Gibberella zeae
           GN=ASF1 PE=3 SV=1
          Length = 279

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 561 RVGNYPRDHEYQAEELNSRPAIKRVIE 481
           RVG Y  ++EY +EELN+ P +K +IE
Sbjct: 108 RVGYYV-NNEYDSEELNAEPPVKPIIE 133
tr_hit_id B0D6D6
Definition tr|B0D6D6|B0D6D6_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 54
Score (bit) 34.7
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915449|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_F09.
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0D6D6|B0D6D6_LACBS Predicted protein OS=Laccaria bicolor (st...    35   3.7  
tr|B7PR72|B7PR72_IXOSC Splicing factor, arginine/serine-rich, pu...    34   4.8  
tr|B3R2C0|B3R2C0_CUPTR Putative 16S rRNA uridine-516 pseudouridy...    34   6.3  
tr|Q4GXI0|Q4GXI0_PLAAL Ribosomal protein L15 (Fragment) OS=Platy...    34   6.3  
tr|Q9WLH3|Q9WLH3_9HIV1 Pol protein (Fragment) OS=Human immunodef...    33   8.2  
tr|Q4RQH2|Q4RQH2_TETNG Chromosome 17 SCAF15006, whole genome sho...    33   8.2  
tr|B5X2T8|B5X2T8_SALSA Pre-mRNA-splicing factor 38A OS=Salmo sal...    33   8.2  
tr|Q9U5J1|Q9U5J1_9TRYP Splicing factor pTSR1 interacting protein...    33   8.2  
tr|Q38BV4|Q38BV4_9TRYP Splicing factor PTSR1 interacting protein...    33   8.2  

>tr|B0D6D6|B0D6D6_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_325830 PE=4 SV=1
          Length = 504

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -2

Query: 363 KQREEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKP 202
           KQREEEA+ R +R  EA  R+ R  +  +RK       +   +E  A+  + +P
Sbjct: 142 KQREEEAEARKQRKEEAEARKQRKEEAEARKQRKKEAKAPKQREKEAEARKQQP 195


>tr|B7PR72|B7PR72_IXOSC Splicing factor, arginine/serine-rich,
           putative (Fragment) OS=Ixodes scapularis
           GN=IscW_ISCW019111 PE=4 SV=1
          Length = 363

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = -2

Query: 375 QGTHKQREEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAG 196
           Q   + R   ++ RS R       R+R  +  SR    +RRS + P   G  + R   + 
Sbjct: 216 QAPRRSRSRSSRSRSSRRRSRSSSRHRPSRSGSRHRRSHRRSRSRPSSPGPRRRRRSSSS 275

Query: 195 EKITFLNTPLKNTNAFMDSRRTEF---HLRRYRSKNP 94
            +  +  +      + + SRR EF     RR +S++P
Sbjct: 276 HRRRYSRSRTPPKKSRLKSRRDEFPETSRRRKKSRSP 312


>tr|B3R2C0|B3R2C0_CUPTR Putative 16S rRNA uridine-516
           pseudouridylate synthase OS=Cupriavidus taiwanensis
           (strain R1 / LMG 19424) GN=RALTA_A1694 PE=4 SV=1
          Length = 607

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 348 EAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAGE 193
           EA+ R     E+ PRRY   +G +R   +    S PP+  G D  R + AG+
Sbjct: 97  EARPRRFGDDESRPRRYGDDRGEARPRRFEGSESRPPRRFGDDDNRPRRAGD 148


>tr|Q4GXI0|Q4GXI0_PLAAL Ribosomal protein L15 (Fragment)
           OS=Platystomos albinus GN=rpL15e PE=2 SV=1
          Length = 150

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 366 HKQREEEAKERSERTSEALPRRYRY*Q--GTSRKDSWNRRSS 247
           HK RE   K  + R+S  L + +RY Q  G SRK +W RR+S
Sbjct: 102 HKHRELRGKTSAGRSSRGLGKGHRYSQTKGGSRKAAWLRRNS 143


>tr|Q9WLH3|Q9WLH3_9HIV1 Pol protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=pol PE=4 SV=1
          Length = 998

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 26/65 (40%), Positives = 32/65 (49%)
 Frame = -2

Query: 360 QREEEAKERSERTSEALPRRYRY*QGTSRKDSWNRRSSNPPKESGADKTRSKPAGEKITF 181
           Q+ E  K  SE+T    P        TSR D W+RR  + P E+GAD T S P   +IT 
Sbjct: 9   QQREARKFSSEQTRANSP--------TSR-DPWDRRRDSLPSETGADPTFSFP---QITL 56

Query: 180 LNTPL 166
              PL
Sbjct: 57  WQRPL 61


>tr|Q4RQH2|Q4RQH2_TETNG Chromosome 17 SCAF15006, whole genome shotgun
            sequence OS=Tetraodon nigroviridis GN=GSTENG00030607001
            PE=4 SV=1
          Length = 1210

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 366  HKQREEEAKERSERTSEALPRRYRY*QGTSRKDSWNR---RSSNPPKESGADKTRSKPA 199
            H  R   +  R    S++ PRR R+   +SR  SW+R   RS +P + +   +   +P+
Sbjct: 1004 HSNRSSSSSSRCSSVSQSPPRRRRHSYSSSRSGSWSRSRSRSVSPERRAQQSRRLYRPS 1062


>tr|B5X2T8|B5X2T8_SALSA Pre-mRNA-splicing factor 38A OS=Salmo salar
           GN=PR38A PE=2 SV=1
          Length = 308

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = -2

Query: 360 QREEEAKERSERTSEALPRRYRY*QGTSRKDSWN---RRSSNPPKESGADKTRSKPAGEK 190
           + E+E +E++ER     P R  Y      + S +   RRSS  P+       R  P    
Sbjct: 195 EEEDEEEEKTERVQTPEPHRRSYRDNDRPRRSPSPRYRRSSRSPRRRSRSPKRRSP---- 250

Query: 189 ITFLNTPLKNTNAFMDSRRTEFHLRRYRSKNP 94
                +P +  +     RR     RR+RSK+P
Sbjct: 251 -----SPRRERHRSKSPRRHRSRERRHRSKSP 277


>tr|Q9U5J1|Q9U5J1_9TRYP Splicing factor pTSR1 interacting protein
           OS=Trypanosoma brucei GN=tsr1ip PE=2 SV=1
          Length = 376

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 354 EEEAKERSERTSEALPRRYRY*QGTSRK--------DSWNRRSSNPPKESGADKTRSKPA 199
           E  A E   + S +  RR+R   GT R+        D   RRS+N  K+SG  + RSK A
Sbjct: 165 EAGASEADTKKSASNRRRHRSGSGTKRRSRSRHRHRDKSRRRSTNNDKKSGRKRERSKDA 224

Query: 198 GE 193
            E
Sbjct: 225 EE 226


>tr|Q38BV4|Q38BV4_9TRYP Splicing factor PTSR1 interacting protein
           OS=Trypanosoma brucei GN=Tb10.70.4700 PE=4 SV=1
          Length = 378

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 354 EEEAKERSERTSEALPRRYRY*QGTSRK--------DSWNRRSSNPPKESGADKTRSKPA 199
           E  A E   + S +  RR+R   GT R+        D   RRS+N  K+SG  + RSK A
Sbjct: 165 EAGASEADTKKSASNRRRHRSGSGTKRRSRSRHRHRDKSRRRSTNNDKKSGRKRERSKDA 224

Query: 198 GE 193
            E
Sbjct: 225 EE 226