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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915455
Clone id YMU001_000071_G05
Library
Length 324
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTAGATCAAATTTGAAAATCTTGCAGGAAAAGCCTAAATTACATGGTTCGGAGCACGA
AAATACCATTGTGGTTCTGACCAAATTCTGCTGCTACTGCAGTATCTCACTACAAATCCG
ACGACTCATAAATTGCCTCAACAAAAGGGTATCAGAAACAAGCATAAAATGGGGGTGCGG
TGGCGACATGGCCCATCTTAAAACGAAATACAGAGAAGCAGAAAAGCACCACCACAAATA
CAAGAAAACCATGAGCAAGTATCCTGAAATTCGAACTTCTCATCACCCACACTCCTATAA
CAATTTTACACTCCCATCTGAATG
■■Homology search results ■■ -
sp_hit_id A8GQB7
Definition sp|A8GQB7|HEM6_RICAH Coproporphyrinogen III oxidase, aerobic OS=Rickettsia akari (strain Hartford)
Align length 42
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915455|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_G05.
         (324 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8GQB7|HEM6_RICAH Coproporphyrinogen III oxidase, aerobic OS=...    33   0.57 
sp|Q4UJP2|HEM6_RICFE Coproporphyrinogen III oxidase, aerobic OS=...    32   0.74 
sp|P54756|EPHA5_HUMAN Ephrin type-A receptor 5 OS=Homo sapiens G...    32   1.3  
sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candi...    31   1.7  
sp|Q9ZC86|HEM6_RICPR Coproporphyrinogen 3 oxidase, aerobic OS=Ri...    31   2.2  
sp|A8GU63|HEM6_RICRS Coproporphyrinogen III oxidase, aerobic OS=...    30   2.8  
sp|B0BVQ3|HEM6_RICRO Coproporphyrinogen III oxidase, aerobic OS=...    30   2.8  
sp|Q92FV8|HEM6_RICCN Coproporphyrinogen 3 oxidase, aerobic OS=Ri...    30   2.8  
sp|Q5GH66|XKR5_MOUSE XK-related protein 5 OS=Mus musculus GN=Xkr...    30   4.8  
sp|P72204|TONB_PASHA Protein tonB OS=Pasteurella haemolytica GN=...    30   4.8  
sp|P07857|NLTP_BOVIN Non-specific lipid-transfer protein OS=Bos ...    30   4.8  
sp|Q1RGQ3|HEM6_RICBR Coproporphyrinogen III oxidase, aerobic OS=...    30   4.8  
sp|A8GY81|HEM6_RICB8 Coproporphyrinogen III oxidase, aerobic OS=...    30   4.8  
sp|Q48739|IPNS_LYSLA Isopenicillin N synthetase OS=Lysobacter la...    29   6.3  
sp|P16020|IPNS_FLASS Isopenicillin N synthetase OS=Flavobacteriu...    29   6.3  
sp|A4FUZ5|SERC3_BOVIN Serine incorporator 3 OS=Bos taurus GN=SER...    29   8.2  

>sp|A8GQB7|HEM6_RICAH Coproporphyrinogen III oxidase, aerobic
           OS=Rickettsia akari (strain Hartford) GN=hemF PE=3 SV=1
          Length = 279

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKY 262
           N R  ETS  W G GGD+     +  E EK H  +K+   KY
Sbjct: 118 NTRYIETSKSWFGGGGDLTPFYPEENETEKFHAAFKEACDKY 159


>sp|Q4UJP2|HEM6_RICFE Coproporphyrinogen III oxidase, aerobic
           OS=Rickettsia felis GN=hemF PE=3 SV=1
          Length = 279

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHHP 289
           N R  ETS  W G GGD+     K  E  K H  +K+   KY    +S++P
Sbjct: 118 NTRYIETSKSWFGGGGDLTPFYPKENETAKFHAAFKEACDKYD---SSYYP 165


>sp|P54756|EPHA5_HUMAN Ephrin type-A receptor 5 OS=Homo sapiens
           GN=EPHA5 PE=1 SV=2
          Length = 1037

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 25/78 (32%), Positives = 33/78 (42%)
 Frame = +2

Query: 71  VVLTKFCCYCSISLQIRRLINCLNKRVSETSIKWGCGGDMAHLKTKYREAEKHHHKYKKT 250
           V+L+  CC C      R    C    V+  S+ W CG   A  K    E + H H     
Sbjct: 592 VLLSGSCCECGCG---RASSLCA---VAHPSLIWRCGYSKA--KQDPEEEKMHFHNGH-- 641

Query: 251 MSKYPEIRTSHHPHSYNN 304
            SK P +RT   PH+Y +
Sbjct: 642 -SKLPGVRTYIDPHTYED 658


>sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candida
           glabrata GN=SEC16 PE=3 SV=1
          Length = 2238

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 206 KYREAEKHHHKYKKTMSKYPEIRTSHHPHSYNNFTLPSE 322
           K  E EKHH            +RTS +  S +N TLPSE
Sbjct: 536 KSEEGEKHHQSSTAKEESPANVRTSDNTASQDNDTLPSE 574


>sp|Q9ZC86|HEM6_RICPR Coproporphyrinogen 3 oxidase, aerobic
           OS=Rickettsia prowazekii GN=hemF PE=3 SV=1
          Length = 279

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHHP 289
           N R  ETS  W G GGD+     +  E  K H  +K+   KY    +S++P
Sbjct: 118 NTRYIETSKNWFGGGGDLTPFYPEENETAKFHTAFKEACDKYD---SSYYP 165


>sp|A8GU63|HEM6_RICRS Coproporphyrinogen III oxidase, aerobic
           OS=Rickettsia rickettsii (strain Sheila Smith) GN=hemF
           PE=3 SV=1
          Length = 279

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHHP 289
           N R  ETS  W G GGD+     +  E  K H  +K+   KY    +S++P
Sbjct: 118 NTRYIETSKSWFGGGGDLTPFYPEKNETVKFHAAFKEVCDKYD---SSYYP 165


>sp|B0BVQ3|HEM6_RICRO Coproporphyrinogen III oxidase, aerobic
           OS=Rickettsia rickettsii (strain Iowa) GN=hemF PE=3 SV=1
          Length = 279

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHHP 289
           N R  ETS  W G GGD+     +  E  K H  +K+   KY    +S++P
Sbjct: 118 NTRYIETSKSWFGGGGDLTPFYPEKNETVKFHAAFKEVCDKYD---SSYYP 165


>sp|Q92FV8|HEM6_RICCN Coproporphyrinogen 3 oxidase, aerobic
           OS=Rickettsia conorii GN=hemF PE=3 SV=1
          Length = 279

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 140 NKRVSETSIKW-GCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHHP 289
           N R  ETS  W G GGD+     +  E  K H  +K+   KY    +S++P
Sbjct: 118 NTRYIETSKSWFGGGGDLTPFYPEKNETVKFHAAFKEACDKYD---SSYYP 165


>sp|Q5GH66|XKR5_MOUSE XK-related protein 5 OS=Mus musculus GN=Xkr5
           PE=2 SV=1
          Length = 676

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 266 QDTCSW--FSCICGGAFLLLCISF*DGPCRHRTPILCLFLI 150
           + TC W  F+ + G  F+L  I+F D P R R     L ++
Sbjct: 232 ESTCHWRLFNLLVGAVFILCYINFWDSPSRSRVASFYLVML 272


>sp|P72204|TONB_PASHA Protein tonB OS=Pasteurella haemolytica
           GN=tonB PE=3 SV=1
          Length = 246

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 KTKYREAEKHHHKYKKTMSKYPEIR 274
           K K +E  KHHHK+ K +   PEI+
Sbjct: 137 KDKPKERPKHHHKHIKALDAGPEIK 161
tr_hit_id Q1LL24
Definition tr|Q1LL24|Q1LL24_RALME Fumarase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
Align length 76
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915455|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_G05.
         (324 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1LL24|Q1LL24_RALME Fumarase OS=Ralstonia metallidurans (stra...    34   3.2  
tr|Q39QH4|Q39QH4_GEOMG Putative uncharacterized protein OS=Geoba...    34   4.1  
tr|B6MTW6|B6MTW6_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|A8XFW5|A8XFW5_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.1  
tr|Q8IDV7|Q8IDV7_PLAF7 Putative uncharacterized protein PF13_021...    33   5.4  
tr|A7RJM0|A7RJM0_NEMVE Predicted protein OS=Nematostella vectens...    33   7.0  
tr|Q9SZU4|Q9SZU4_ARATH Putative uncharacterized protein F6G17.90...    33   7.0  
tr|A8MRY2|A8MRY2_ARATH Uncharacterized protein At4g37440.2 OS=Ar...    33   7.0  

>tr|Q1LL24|Q1LL24_RALME Fumarase OS=Ralstonia metallidurans (strain
           CH34 / ATCC 43123 / DSM 2839) GN=Rmet_2273 PE=4 SV=1
          Length = 521

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 30  KSLNYMVRSTKIPLWF*PNSAATAVSHYKSDDS*IASTKGYQKQA*NGGAVATWPILK-- 203
           K L+Y   +  +P+   PN AAT  +H+  D S +A  +           ++ WP ++  
Sbjct: 272 KVLDYPTHAANLPVAMIPNCAATRHAHFTLDGSGVAKLEAPD--------LSQWPKVEWA 323

Query: 204 RNTEKQKSTTTNTRKP 251
            NTE  KS   NT  P
Sbjct: 324 PNTETSKSVDLNTLTP 339


>tr|Q39QH4|Q39QH4_GEOMG Putative uncharacterized protein
           OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
           / DSM 7210) GN=Gmet_3287 PE=4 SV=1
          Length = 102

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 252 MVFLYLWWCFSASLYFVL 199
           MVFLY WW FSA  YF+L
Sbjct: 25  MVFLYGWWAFSAGFYFLL 42


>tr|B6MTW6|B6MTW6_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_124661 PE=4 SV=1
          Length = 1365

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
 Frame = +2

Query: 17   KILQEKPKLHGSEHENTIVVLTKFCCYCSISLQIRRLINCLNKRVSETSIKWGCGGDMAH 196
            ++++E    H    +N++  + +FC YC       R + CL+  + E     GCG D AH
Sbjct: 1265 RVVKEDHSCHYERCKNSVATVGQFCTYC-------RKLYCLSHHMPEVH---GCGED-AH 1313

Query: 197  LKTKYR--------EAEKHHHKYKKTMSKYPEIRTSHHPHSYNNFTLP 316
            ++ + R        E       ++K +++       +HP     F+LP
Sbjct: 1314 MEARARLSKVIMNIEYNTVQGFFQKKIARGSTAINPYHPVGEIRFSLP 1361


>tr|A8XFW5|A8XFW5_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG12496 PE=4 SV=2
          Length = 838

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = +2

Query: 26  QEKPKLHGSEHENTIVVL----------TKFCCYCSISLQIRRLINCLNKRVSE 157
           +EK KLH +  EN  ++           TK+  Y  + +  RRL+ CLN++V+E
Sbjct: 375 EEKRKLHQNIEENKALIAKLESELPTQSTKYTMYQELRVYSRRLLECLNEKVAE 428


>tr|Q8IDV7|Q8IDV7_PLAF7 Putative uncharacterized protein PF13_0210
            OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0210 PE=4
            SV=1
          Length = 3256

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 107  SLQIRRLINCLNKRVSETSIKWGCGGDMAHLKTKYREAEKHHHKYKKTMSKYPEIRTSHH 286
            S  +  + N +NK ++  + K  C   M +   +  E+  H   YK  M  Y     +HH
Sbjct: 1580 STYVNEIHNYINKDINYNNEKNECNHHMVNYNNEKNESNHHMVNYKNDMDNY-----NHH 1634

Query: 287  PHSYNN 304
              +YNN
Sbjct: 1635 MVNYNN 1640


>tr|A7RJM0|A7RJM0_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g238783 PE=4 SV=1
          Length = 323

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 46  WFGARKYHCGSDQILLLLQY 105
           WFG  KYHC +DQ+LL   Y
Sbjct: 189 WFGTGKYHCANDQVLLWHYY 208


>tr|Q9SZU4|Q9SZU4_ARATH Putative uncharacterized protein F6G17.90
           (Putative uncharacterized protein At4g37440)
           OS=Arabidopsis thaliana GN=AT4g37440 PE=2 SV=1
          Length = 471

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 50  SEHENTIVVLTKFCCYCSISLQIR-RLINCLNKRVSETSIKWGCGGDMAHLKTKYREAEK 226
           SEHEN   V +  C   S+ L +R R +    +R  + ++ W C      ++ KY+E + 
Sbjct: 105 SEHENDQEVDSMICNETSLPLWVRKRKLTDHWRRFVQPTLMWRC----KWIELKYKELQN 160

Query: 227 HHHKYKKTMSKY 262
              KY K + +Y
Sbjct: 161 QAQKYDKEVEEY 172


>tr|A8MRY2|A8MRY2_ARATH Uncharacterized protein At4g37440.2
           OS=Arabidopsis thaliana GN=At4g37440 PE=4 SV=1
          Length = 444

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 50  SEHENTIVVLTKFCCYCSISLQIR-RLINCLNKRVSETSIKWGCGGDMAHLKTKYREAEK 226
           SEHEN   V +  C   S+ L +R R +    +R  + ++ W C      ++ KY+E + 
Sbjct: 105 SEHENDQEVDSMICNETSLPLWVRKRKLTDHWRRFVQPTLMWRC----KWIELKYKELQN 160

Query: 227 HHHKYKKTMSKY 262
              KY K + +Y
Sbjct: 161 QAQKYDKEVEEY 172