BP915465
Clone id YMU001_000071_H08
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000071_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCCTGATTTCTCTGTTCTGTCACGCTTTCAAGCTAAACCAGGTCAAAAACTTCAACCTAA
ATTCCTCCTTCAGATAGCCTTCACATTCCAACCAGCGAATAATCTTCACACACAACTCAT
AGTTGCGGGCAGCACAAAGAGAACCTCCCATGCTTCCTCCACATCCATTAACAAGCCCAT
AATTATCACTTCTACCAAGACTTTCTGCTGTTCTTTTCCTCATTATAGTTGTCCGTGGCT
CCATTTCAATATTTCTTCCTGCACTTCGAACTTGCACGGCCCAGCTCTCTCCATGCCCAT
TACACTCGGCACCCACAATTCTACGCCTGTTTTCCGGACCCTCCTGAACTTCATTCGTCA
CATTTGTCTGCATTACATCAGAAACAACCTGCGAAAGAGCCTCTGTTTCTTCTCTTTGAG
ACGTGTGAAGAGTTTCCCTGGNAATTCACTGAAGCANNNTCATCCAAGTCTGTGATCTCA
GCACAGGTCACCCTGCCCTTGACCTCACCTTCTTGTACCAAAGCACTAGAATCTCTCCTT
GACAGCGTTCTAATG
■■Homology search results ■■ -
sp_hit_id Q9FIE3
Definition sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana
Align length 36
Score (bit) 40.8
E-value 0.004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915465|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_H08.
(555 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arab... 41 0.004
sp|P75679|INSN1_ECOLI Transposase insN for insertion sequence el... 34 0.42
sp|P83093|STIM2_MOUSE Stromal interaction molecule 2 OS=Mus musc... 34 0.42
sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo sap... 32 1.6
sp|Q1E5A9|LMBD1_COCIM Probable lysosomal cobalamin transporter O... 32 2.7
sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1 OS... 32 2.7
sp|Q3UR50|VW5B2_MOUSE von Willebrand factor A domain-containing ... 31 4.6
sp|P97837|DLGP2_RAT Disks large-associated protein 2 OS=Rattus n... 31 4.6
sp|Q8BJ42|DLGP2_MOUSE Disks large-associated protein 2 OS=Mus mu... 31 4.6
sp|Q1XDQ3|YCXB_PORYE Uncharacterized protein ORF621 OS=Porphyra ... 30 6.0
sp|A8YXI3|ALR_LACH4 Alanine racemase OS=Lactobacillus helveticus... 30 6.0
sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family prote... 30 7.9
sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficienc... 30 7.9
sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Sacchar... 30 7.9
sp|P18800|GAG_HV1ND Gag polyprotein OS=Human immunodeficiency vi... 30 7.9

>sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3
OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
Length = 620

Score = 40.8 bits (94), Expect = 0.004
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = -3

Query: 109 VKIIRWLECEGYLKEEFRLKFLTWFSLKA*QNREIR 2
VK IR LE EG++ + FR +FLTW+SL+A +RE+R
Sbjct: 537 VKTIRCLEEEGHIDKSFRERFLTWYSLRA-THREVR 571


>sp|P75679|INSN1_ECOLI Transposase insN for insertion sequence
element IS911A OS=Escherichia coli (strain K12) GN=insN1
PE=3 SV=1
Length = 134

Score = 34.3 bits (77), Expect = 0.42
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = -3

Query: 274 QVRSAGRNIEMEPRTTIMRKRTAESLGRSDNYGLVNGCGGSMGGSLCAARNYELC 110
++R + IEME I++K T +S+G+ ++Y GCGG + + +R LC
Sbjct: 81 ELRKKLQRIEME--NEILKKATVDSIGQRNSYVKTWGCGGFLNETNIYSRGKSLC 133


>sp|P83093|STIM2_MOUSE Stromal interaction molecule 2 OS=Mus
musculus GN=Stim2 PE=1 SV=2
Length = 746

Score = 34.3 bits (77), Expect = 0.42
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1

Query: 292 HAHYTRHPQFYACFPDPPELHSSHLSALHQKQPAKEPLFLLFETCEEFPWXFTEAXSSKS 471
H H+ +HPQ PDP L S AL++ + +E ++ E E P +E S S
Sbjct: 543 HPHHPQHPQHSLPSPDPDILSVSSCPALYRNEEEEEAIYFTAEKQWEVPDTASECDSLNS 602


>sp|Q9P246|STIM2_HUMAN Stromal interaction molecule 2 OS=Homo
sapiens GN=STIM2 PE=1 SV=2
Length = 746

Score = 32.3 bits (72), Expect = 1.6
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1

Query: 292 HAHYTRHPQFYACFPDPPELHSSHLSALHQKQPAKEPLFLLFETCEEFPWXFTEAXSSKS 471
H H+ +H PDP L S AL++ + +E ++ E E P +E S S
Sbjct: 543 HPHHPQHTPHSLPSPDPDILSVSSCPALYRNEEEEEAIYFSAEKQWEVPDTASECDSLNS 602

Query: 472 VISAQVTLPLT 504
I + + PL+
Sbjct: 603 SIGRKQSPPLS 613


>sp|Q1E5A9|LMBD1_COCIM Probable lysosomal cobalamin transporter
OS=Coccidioides immitis GN=CIMG_02254 PE=3 SV=1
Length = 584

Score = 31.6 bits (70), Expect = 2.7
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3

Query: 388 VVSDVMQTNVTNEVQEGPENRRRIVGAECNGHGESWAVQVRSAGRNIEMEPRTTIMRKRT 209
+ S ++ N+ + ++E E +R++ G C G+ + + + R ++ E RT RKR
Sbjct: 227 ISSPMLSANIESRLEENIERQRQLEG-RCGGNPDHLSSKDRRELDSLVREERTLRRRKRL 285

Query: 208 AE-SLGRSDNY 179
AE S G+ N+
Sbjct: 286 AEASRGQGRNF 296


>sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1
OS=Homo sapiens GN=POP1 PE=1 SV=2
Length = 1024

Score = 31.6 bits (70), Expect = 2.7
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = +1

Query: 241 PFQYFFLHFELARPSSLHAHYTRHPQFYACFPDPP-------ELHSSHLSALHQKQPAKE 399
PF Y + + S++H+ Y R P FPD P E + L ++ PAK
Sbjct: 633 PFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCPAGMLFAEEQAKNLLEKYKRRPPAKR 692

Query: 400 PLFLLFETCEEF--PW 441
P ++ T F PW
Sbjct: 693 PNYVKLGTLAPFCCPW 708


>sp|Q3UR50|VW5B2_MOUSE von Willebrand factor A domain-containing
protein 5B2 OS=Mus musculus GN=Vwa5b2 PE=2 SV=2
Length = 1248

Score = 30.8 bits (68), Expect = 4.6
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2

Query: 5 DFSVLSRFQA---KPGQKLQPKFLLQIAFTFQPA 97
D SVLSR QA +PG++LQPK + + +PA
Sbjct: 490 DLSVLSRGQAYFLRPGERLQPKLVQALRKALEPA 523


>sp|P97837|DLGP2_RAT Disks large-associated protein 2 OS=Rattus
norvegicus GN=Dlgap2 PE=1 SV=3
Length = 1059

Score = 30.8 bits (68), Expect = 4.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2

Query: 218 PHYSCPWLHFNISSCTSNLHGPALSMPITLGTHNSTPVFRTLLNFIRHICLHY 376
P SCP H S S++H + MP+ LG H S+ F + H HY
Sbjct: 127 PAESCPMDHHRCSP-RSSVHSECMMMPVMLGDHVSSSTFPRM-----HYSSHY 173


>sp|Q8BJ42|DLGP2_MOUSE Disks large-associated protein 2 OS=Mus
musculus GN=Dlgap2 PE=1 SV=2
Length = 1059

Score = 30.8 bits (68), Expect = 4.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2

Query: 218 PHYSCPWLHFNISSCTSNLHGPALSMPITLGTHNSTPVFRTLLNFIRHICLHY 376
P SCP H S S++H + MP+ LG H S+ F + H HY
Sbjct: 127 PAESCPMDHHRCSP-RSSVHSECMMMPVMLGDHVSSSTFPRM-----HYSSHY 173


>sp|Q1XDQ3|YCXB_PORYE Uncharacterized protein ORF621 OS=Porphyra
yezoensis PE=4 SV=1
Length = 612

Score = 30.4 bits (67), Expect = 6.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3

Query: 9 SLFCHAFKLNQVKNFNLNSSFR*PSHSNQRIIFT 110
+LF H L QV NFNL SF+ SH N ++ T
Sbjct: 452 TLFFHKMSLKQVSNFNLPVSFK--SHLNHILVST 483


tr_hit_id A7PET2
Definition tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 108
Score (bit) 80.5
E-value 6.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915465|Adiantum capillus-veneris mRNA, clone:
YMU001_000071_H08.
(555 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genom... 80 6e-14
tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis... 77 8e-13
tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome ... 76 1e-12
tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subs... 69 2e-10
tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza... 69 2e-10
tr|B7ZX21|B7ZX21_MAIZE Putative uncharacterized protein OS=Zea m... 63 9e-09
tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequen... 63 1e-08
tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza... 63 1e-08
tr|B4FEZ5|B4FEZ5_MAIZE Putative uncharacterized protein OS=Zea m... 63 1e-08
tr|B8A1M9|B8A1M9_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08
tr|A0SQ42|A0SQ42_TRIMO VIL3 protein OS=Triticum monococcum subsp... 61 5e-08
tr|A0SQ39|A0SQ39_TRIMO VIL3 protein OS=Triticum monococcum subsp... 61 5e-08
tr|A0SQ41|A0SQ41_TRIMO VIL2 protein OS=Triticum monococcum subsp... 60 6e-08
tr|A0SQ38|A0SQ38_TRIMO VIL2 protein OS=Triticum monococcum subsp... 60 6e-08
tr|A8BCW8|A8BCW8_WHEAT Vernalization insensitive 3 OS=Triticum a... 60 1e-07
tr|A0SQ43|A0SQ43_TRIMO VIL1 protein OS=Triticum monococcum subsp... 60 1e-07
tr|A0SQ40|A0SQ40_TRIMO VIL1 protein OS=Triticum monococcum subsp... 60 1e-07
tr|B6SH64|B6SH64_MAIZE Putative uncharacterized protein OS=Zea m... 59 2e-07
tr|A7NUL4|A7NUL4_VITVI Chromosome chr18 scaffold_1, whole genome... 58 3e-07
tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subs... 57 7e-07
tr|B8BBY4|B8BBY4_ORYSI Putative uncharacterized protein OS=Oryza... 57 7e-07
tr|A3BQR4|A3BQR4_ORYSJ Putative uncharacterized protein OS=Oryza... 57 7e-07
tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genom... 57 9e-07
tr|Q6AUH8|Q6AUH8_ORYSJ Os05g0145400 protein OS=Oryza sativa subs... 53 1e-05
tr|A2Y0C2|A2Y0C2_ORYSI Putative uncharacterized protein OS=Oryza... 53 1e-05
tr|O64617|O64617_ARATH Putative uncharacterized protein At2g1887... 52 2e-05
tr|Q9SUM4|Q9SUM4_ARATH Putative uncharacterized protein AT4g3020... 51 4e-05
tr|Q9LHF5|Q9LHF5_ARATH Emb|CAB52464.1 (VIN3-like 1 protein) OS=A... 51 4e-05
tr|Q8GUH6|Q8GUH6_ARATH Putative uncharacterized protein At4g3020... 51 4e-05
tr|Q3E9U4|Q3E9U4_ARATH Uncharacterized protein At4g30200.3 OS=Ar... 51 4e-05

>tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016778001
PE=4 SV=1
Length = 619

Score = 80.5 bits (197), Expect = 6e-14
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Frame = -3

Query: 334 ENRRRIVGAECNGHGESWAVQVRSAGRNI-EMEPRTTIMRKRTAESLG--RSDNYGLVNG 164
+N+ + + +G ++W R G + +++ R + RKR A + G R + L+NG
Sbjct: 466 DNKNCLARSHGSGDSQTWT---RGLGGEVPDVDSRAGLCRKRAASTNGEARDCDSTLING 522

Query: 163 CGGSMG-GSLCAARNYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
+ GS C N+E CVKIIRWLECEG++K+EFRLK LTWFSL++
Sbjct: 523 SPFRVANGSGCLDENFEYCVKIIRWLECEGHIKQEFRLKLLTWFSLRS 570


>tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_003834 PE=4 SV=1
Length = 707

Score = 76.6 bits (187), Expect = 8e-13
Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Frame = -3

Query: 247 EMEPRTTIMRKRTAESLG--RSDNYGLVNGCGGSMG-GSLCAARNYELCVKIIRWLECEG 77
+++ R + RKR A + G R + L+NG + GS C N+E CVKIIRWLECEG
Sbjct: 581 DVDSRAGLCRKRAASTNGEARDCDSTLINGSPFRVANGSGCLDENFEYCVKIIRWLECEG 640

Query: 76 YLKEEFRLKFLTWFSLKA 23
++K+EFRLK LTWFSL++
Sbjct: 641 HIKQEFRLKLLTWFSLRS 658


>tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032539001
PE=4 SV=1
Length = 631

Score = 76.3 bits (186), Expect = 1e-12
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Frame = -3

Query: 301 NGHGESWAVQVRSAGRNIEMEPRTTIMRKRTAESLGRSDNYGLVNGCGGSMGGSLCAA-- 128
+G +S ++R+ +E RT + RK+T S +S+ Y V+ +CA
Sbjct: 487 SGSHDSQTCKIRAIREVPAVESRTELCRKQTLSS--KSEAYDCVSTLINGSPLQVCAGSG 544

Query: 127 ---RNYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
R+YE CVKIIRWLECEG++ +EFR+KFLTWFSL++
Sbjct: 545 HLDRSYEYCVKIIRWLECEGHIGQEFRMKFLTWFSLRS 582


>tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subsp.
japonica GN=P0463E12.2-1 PE=2 SV=1
Length = 749

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = -3

Query: 262 AGRNIEMEPRTTIMRKRTAE---SLGRSDNYGLVNGCGGSMGGSLCAARNYELCVKIIRW 92
+GR+++ +P I++ +++ G S N C C +YE CVK++RW
Sbjct: 615 SGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRW 674

Query: 91 LECEGYLKEEFRLKFLTWFSLKA 23
LECEGY++ FR+KFLTW+SL+A
Sbjct: 675 LECEGYIETNFRVKFLTWYSLRA 697


>tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05883 PE=4 SV=1
Length = 749

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = -3

Query: 262 AGRNIEMEPRTTIMRKRTAE---SLGRSDNYGLVNGCGGSMGGSLCAARNYELCVKIIRW 92
+GR+++ +P I++ +++ G S N C C +YE CVK++RW
Sbjct: 615 SGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRW 674

Query: 91 LECEGYLKEEFRLKFLTWFSLKA 23
LECEGY++ FR+KFLTW+SL+A
Sbjct: 675 LECEGYIETNFRVKFLTWYSLRA 697


>tr|B7ZX21|B7ZX21_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 453

Score = 63.2 bits (152), Expect = 9e-09
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = -3

Query: 277 VQVRSAGRNIEMEPRTTIMRKRT--AESLGRSDNYGLVNGCGGSMGGSLCAARNYELCVK 104
+ V++ E EP + ++ T + G D++ V+ YE CV+
Sbjct: 330 IVVQNGSSKPEREPGNSSNKRATDKMDDFGHKDSFSEVS---------------YEYCVR 374

Query: 103 IIRWLECEGYLKEEFRLKFLTWFSLKA 23
++RWLECEGY++ FR+KFLTWFSL+A
Sbjct: 375 VVRWLECEGYIETNFRMKFLTWFSLRA 401


>tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequence
OS=Oryza sativa subsp. japonica GN=LOC_Os12g34850 PE=2
SV=1
Length = 707

Score = 62.8 bits (151), Expect = 1e-08
Identities = 23/34 (67%), Positives = 32/34 (94%)
Frame = -3

Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
NYE CVK+IRWLEC G+++++FR+KFLTWFSL++
Sbjct: 625 NYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRS 658


>tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38576 PE=4 SV=1
Length = 707

Score = 62.8 bits (151), Expect = 1e-08
Identities = 23/34 (67%), Positives = 32/34 (94%)
Frame = -3

Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
NYE CVK+IRWLEC G+++++FR+KFLTWFSL++
Sbjct: 625 NYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRS 658


>tr|B4FEZ5|B4FEZ5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 124

Score = 62.8 bits (151), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = -3

Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
+YE CV+++RWLECEGY++ FR+KFLTWFSL+A
Sbjct: 14 SYEYCVRVVRWLECEGYIETNFRMKFLTWFSLRA 47


>tr|B8A1M9|B8A1M9_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 698

Score = 62.0 bits (149), Expect = 2e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = -3

Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23
NYE CVKIIRWLEC G ++++FR+KFLTWFSL++
Sbjct: 616 NYEYCVKIIRWLECSGLIEKDFRMKFLTWFSLRS 649