BP915465 |
Clone id |
YMU001_000071_H08 |
Library |
YMU01 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000071_H08. |
Accession |
BP915465 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCCTGATTTCTCTGTTCTGTCACGCTTTCAAGCTAAACCAGGTCAAAAACTTCAACCTAA ATTCCTCCTTCAGATAGCCTTCACATTCCAACCAGCGAATAATCTTCACACACAACTCAT AGTTGCGGGCAGCACAAAGAGAACCTCCCATGCTTCCTCCACATCCATTAACAAGCCCAT AATTATCACTTCTACCAAGACTTTCTGCTGTTCTTTTCCTCATTATAGTTGTCCGTGGCT CCATTTCAATATTTCTTCCTGCACTTCGAACTTGCACGGCCCAGCTCTCTCCATGCCCAT TACACTCGGCACCCACAATTCTACGCCTGTTTTCCGGACCCTCCTGAACTTCATTCGTCA CATTTGTCTGCATTACATCAGAAACAACCTGCGAAAGAGCCTCTGTTTCTTCTCTTTGAG ACGTGTGAAGAGTTTCCCTGGNAATTCACTGAAGCANNNTCATCCAAGTCTGTGATCTCA GCACAGGTCACCCTGCCCTTGACCTCACCTTCTTGTACCAAAGCACTAGAATCTCTCCTT GACAGCGTTCTAATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FIE3 |
Definition |
sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana |
Align length |
36 |
Score (bit) |
40.8 |
E-value |
0.004 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PET2 |
Definition |
tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
108 |
Score (bit) |
80.5 |
E-value |
6.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915465|Adiantum capillus-veneris mRNA, clone: YMU001_000071_H08. (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genom... 80 6e-14 tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis... 77 8e-13 tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome ... 76 1e-12 tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subs... 69 2e-10 tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza... 69 2e-10 tr|B7ZX21|B7ZX21_MAIZE Putative uncharacterized protein OS=Zea m... 63 9e-09 tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequen... 63 1e-08 tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza... 63 1e-08 tr|B4FEZ5|B4FEZ5_MAIZE Putative uncharacterized protein OS=Zea m... 63 1e-08 tr|B8A1M9|B8A1M9_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08 tr|A0SQ42|A0SQ42_TRIMO VIL3 protein OS=Triticum monococcum subsp... 61 5e-08 tr|A0SQ39|A0SQ39_TRIMO VIL3 protein OS=Triticum monococcum subsp... 61 5e-08 tr|A0SQ41|A0SQ41_TRIMO VIL2 protein OS=Triticum monococcum subsp... 60 6e-08 tr|A0SQ38|A0SQ38_TRIMO VIL2 protein OS=Triticum monococcum subsp... 60 6e-08 tr|A8BCW8|A8BCW8_WHEAT Vernalization insensitive 3 OS=Triticum a... 60 1e-07 tr|A0SQ43|A0SQ43_TRIMO VIL1 protein OS=Triticum monococcum subsp... 60 1e-07 tr|A0SQ40|A0SQ40_TRIMO VIL1 protein OS=Triticum monococcum subsp... 60 1e-07 tr|B6SH64|B6SH64_MAIZE Putative uncharacterized protein OS=Zea m... 59 2e-07 tr|A7NUL4|A7NUL4_VITVI Chromosome chr18 scaffold_1, whole genome... 58 3e-07 tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subs... 57 7e-07 tr|B8BBY4|B8BBY4_ORYSI Putative uncharacterized protein OS=Oryza... 57 7e-07 tr|A3BQR4|A3BQR4_ORYSJ Putative uncharacterized protein OS=Oryza... 57 7e-07 tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genom... 57 9e-07 tr|Q6AUH8|Q6AUH8_ORYSJ Os05g0145400 protein OS=Oryza sativa subs... 53 1e-05 tr|A2Y0C2|A2Y0C2_ORYSI Putative uncharacterized protein OS=Oryza... 53 1e-05 tr|O64617|O64617_ARATH Putative uncharacterized protein At2g1887... 52 2e-05 tr|Q9SUM4|Q9SUM4_ARATH Putative uncharacterized protein AT4g3020... 51 4e-05 tr|Q9LHF5|Q9LHF5_ARATH Emb|CAB52464.1 (VIN3-like 1 protein) OS=A... 51 4e-05 tr|Q8GUH6|Q8GUH6_ARATH Putative uncharacterized protein At4g3020... 51 4e-05 tr|Q3E9U4|Q3E9U4_ARATH Uncharacterized protein At4g30200.3 OS=Ar... 51 4e-05
>tr|A7PET2|A7PET2_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016778001 PE=4 SV=1 Length = 619
Score = 80.5 bits (197), Expect = 6e-14 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 4/108 (3%) Frame = -3
Query: 334 ENRRRIVGAECNGHGESWAVQVRSAGRNI-EMEPRTTIMRKRTAESLG--RSDNYGLVNG 164 +N+ + + +G ++W R G + +++ R + RKR A + G R + L+NG Sbjct: 466 DNKNCLARSHGSGDSQTWT---RGLGGEVPDVDSRAGLCRKRAASTNGEARDCDSTLING 522
Query: 163 CGGSMG-GSLCAARNYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 + GS C N+E CVKIIRWLECEG++K+EFRLK LTWFSL++ Sbjct: 523 SPFRVANGSGCLDENFEYCVKIIRWLECEGHIKQEFRLKLLTWFSLRS 570
>tr|A5BJM1|A5BJM1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003834 PE=4 SV=1 Length = 707
Score = 76.6 bits (187), Expect = 8e-13 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 3/78 (3%) Frame = -3
Query: 247 EMEPRTTIMRKRTAESLG--RSDNYGLVNGCGGSMG-GSLCAARNYELCVKIIRWLECEG 77 +++ R + RKR A + G R + L+NG + GS C N+E CVKIIRWLECEG Sbjct: 581 DVDSRAGLCRKRAASTNGEARDCDSTLINGSPFRVANGSGCLDENFEYCVKIIRWLECEG 640
Query: 76 YLKEEFRLKFLTWFSLKA 23 ++K+EFRLK LTWFSL++ Sbjct: 641 HIKQEFRLKLLTWFSLRS 658
>tr|A7P5H9|A7P5H9_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032539001 PE=4 SV=1 Length = 631
Score = 76.3 bits (186), Expect = 1e-12 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%) Frame = -3
Query: 301 NGHGESWAVQVRSAGRNIEMEPRTTIMRKRTAESLGRSDNYGLVNGCGGSMGGSLCAA-- 128 +G +S ++R+ +E RT + RK+T S +S+ Y V+ +CA Sbjct: 487 SGSHDSQTCKIRAIREVPAVESRTELCRKQTLSS--KSEAYDCVSTLINGSPLQVCAGSG 544
Query: 127 ---RNYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 R+YE CVKIIRWLECEG++ +EFR+KFLTWFSL++ Sbjct: 545 HLDRSYEYCVKIIRWLECEGHIGQEFRMKFLTWFSLRS 582
>tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subsp. japonica GN=P0463E12.2-1 PE=2 SV=1 Length = 749
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Frame = -3
Query: 262 AGRNIEMEPRTTIMRKRTAE---SLGRSDNYGLVNGCGGSMGGSLCAARNYELCVKIIRW 92 +GR+++ +P I++ +++ G S N C C +YE CVK++RW Sbjct: 615 SGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRW 674
Query: 91 LECEGYLKEEFRLKFLTWFSLKA 23 LECEGY++ FR+KFLTW+SL+A Sbjct: 675 LECEGYIETNFRVKFLTWYSLRA 697
>tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05883 PE=4 SV=1 Length = 749
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Frame = -3
Query: 262 AGRNIEMEPRTTIMRKRTAE---SLGRSDNYGLVNGCGGSMGGSLCAARNYELCVKIIRW 92 +GR+++ +P I++ +++ G S N C C +YE CVK++RW Sbjct: 615 SGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRW 674
Query: 91 LECEGYLKEEFRLKFLTWFSLKA 23 LECEGY++ FR+KFLTW+SL+A Sbjct: 675 LECEGYIETNFRVKFLTWYSLRA 697
>tr|B7ZX21|B7ZX21_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 453
Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Frame = -3
Query: 277 VQVRSAGRNIEMEPRTTIMRKRT--AESLGRSDNYGLVNGCGGSMGGSLCAARNYELCVK 104 + V++ E EP + ++ T + G D++ V+ YE CV+ Sbjct: 330 IVVQNGSSKPEREPGNSSNKRATDKMDDFGHKDSFSEVS---------------YEYCVR 374
Query: 103 IIRWLECEGYLKEEFRLKFLTWFSLKA 23 ++RWLECEGY++ FR+KFLTWFSL+A Sbjct: 375 VVRWLECEGYIETNFRMKFLTWFSLRA 401
>tr|Q2QPD5|Q2QPD5_ORYSJ cDNA clone:J013158L10, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os12g34850 PE=2 SV=1 Length = 707
Score = 62.8 bits (151), Expect = 1e-08 Identities = 23/34 (67%), Positives = 32/34 (94%) Frame = -3
Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 NYE CVK+IRWLEC G+++++FR+KFLTWFSL++ Sbjct: 625 NYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRS 658
>tr|B8BM95|B8BM95_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38576 PE=4 SV=1 Length = 707
Score = 62.8 bits (151), Expect = 1e-08 Identities = 23/34 (67%), Positives = 32/34 (94%) Frame = -3
Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 NYE CVK+IRWLEC G+++++FR+KFLTWFSL++ Sbjct: 625 NYEYCVKVIRWLECSGHIEKDFRMKFLTWFSLRS 658
>tr|B4FEZ5|B4FEZ5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 124
Score = 62.8 bits (151), Expect = 1e-08 Identities = 23/34 (67%), Positives = 31/34 (91%) Frame = -3
Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 +YE CV+++RWLECEGY++ FR+KFLTWFSL+A Sbjct: 14 SYEYCVRVVRWLECEGYIETNFRMKFLTWFSLRA 47
>tr|B8A1M9|B8A1M9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 698
Score = 62.0 bits (149), Expect = 2e-08 Identities = 24/34 (70%), Positives = 31/34 (91%) Frame = -3
Query: 124 NYELCVKIIRWLECEGYLKEEFRLKFLTWFSLKA 23 NYE CVKIIRWLEC G ++++FR+KFLTWFSL++ Sbjct: 616 NYEYCVKIIRWLECSGLIEKDFRMKFLTWFSLRS 649
|