BP915474
Clone id YMU001_000072_A07
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGGCACATGGTTGATGCCCATTATATATGCATTTTGGCGAGCACTTTCAACTGCCGGTAA
GCTCTCTAGAGAGCATTGTTTTCGCATTGATCAAGTTTCCGGATTGCAAATCTTTGGGCG
TTTGCTTAATGCGCAGTCACTCCGTTGATGTACGTTGAGTGCGGATTGCCATTGTATGTG
AAAATGTGGAGCCATTTTAGCATTTCTACTCATTGGCATTGAGTAGTGTTATGGTTTATG
GTACAGATTGTACTTGAGTTTTTTGCTCAGTTTTCAGGGGAAATTCTGTCGGATTTTTCC
CAGATTCTCGCCATAGTTTGTGATCGAGTGTGTACTCTCACTTTGACAGGTTTTGTCAGT
TTGGACACAGTTTCGTGTATATGTATCCACTCTCGCAAGAGTGAGGAGTTGTATATCTTT
C
■■Homology search results ■■ -
sp_hit_id P0C6V5
Definition sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41)
Align length 43
Score (bit) 28.9
E-value 8.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915474|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A07.
(421 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious ... 29 8.4
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectiou... 29 8.4
sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1 29 8.4

>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain M41) GN=1a PE=3 SV=1
Length = 3953

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3

Query: 57 VSSLESIVFALIKFPDCKSLGVCLMRSHSVDVR*VRIAIVCEN 185
VSSL +++F+++K D + L V +++S V + IVC N
Sbjct: 3552 VSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSN 3594


>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain M41) GN=rep PE=3 SV=1
Length = 6631

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3

Query: 57 VSSLESIVFALIKFPDCKSLGVCLMRSHSVDVR*VRIAIVCEN 185
VSSL +++F+++K D + L V +++S V + IVC N
Sbjct: 3552 VSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSN 3594


>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1
Length = 2118

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3

Query: 380 IHETVSKLTKPVKVRVHTRSQTMARI 303
+H T SKL P+ RVH R+QT ++
Sbjct: 1363 VHPTKSKLQVPLAPRVHRRAQTRLKV 1388


tr_hit_id A7MHE3
Definition tr|A7MHE3|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobacter sakazakii (strain ATCC BAA-894)
Align length 72
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915474|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A07.
(421 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7MHE3|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobac... 35 1.4
tr|A9Y3F5|A9Y3F5_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterob... 35 1.4
tr|A9Y3E2|A9Y3E2_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterob... 35 1.4
tr|Q03WY1|Q03WY1_LEUMM Glycyl-tRNA synthetase, beta subunit OS=L... 33 7.0

>tr|A7MHE3|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobacter
sakazakii (strain ATCC BAA-894) GN=ESA_01178 PE=3 SV=1
Length = 359

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -3

Query: 239 INHNTTQCQ*VEMLKWLHIFTYNGNPHSTYINGVTAH*ANAQRFAIRKLDQCENNAL*RA 60
INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R
Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68

Query: 59 YRQLKVLAKMHI 24
+++ + A MH+
Sbjct: 69 FKEHQPDAVMHL 80


>tr|A9Y3F5|A9Y3F5_ENTSA dTDP-D-glucose-4,6-dehydratase
OS=Enterobacter sakazakii GN=rmlB PE=4 SV=1
Length = 360

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -3

Query: 239 INHNTTQCQ*VEMLKWLHIFTYNGNPHSTYINGVTAH*ANAQRFAIRKLDQCENNAL*RA 60
INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R
Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68

Query: 59 YRQLKVLAKMHI 24
+++ + A MH+
Sbjct: 69 FKEHQPDAVMHL 80


>tr|A9Y3E2|A9Y3E2_ENTSA dTDP-D-glucose-4,6-dehydratase
OS=Enterobacter sakazakii GN=rmlB PE=4 SV=1
Length = 359

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -3

Query: 239 INHNTTQCQ*VEMLKWLHIFTYNGNPHSTYINGVTAH*ANAQRFAIRKLDQCENNAL*RA 60
INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R
Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68

Query: 59 YRQLKVLAKMHI 24
+++ + A MH+
Sbjct: 69 FKEHQPDAVMHL 80


>tr|Q03WY1|Q03WY1_LEUMM Glycyl-tRNA synthetase, beta subunit
OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=LEUM_1193 PE=4 SV=1
Length = 685

Score = 33.1 bits (74), Expect = 7.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1

Query: 211 HWH*VVLWFMVQIVLEFFAQFSGEILS-DFSQILAIVCDRVCTLTLTGFVSLDTVSCICI 387
+WH ++ VL FAQ GE+ + D + +L + DRV LTL V D VS
Sbjct: 495 NWH-----IALKPVLTQFAQSQGEVAAADITAVLEFILDRVRKLTLDDGVRQDLVSAGVS 549

Query: 388 HSRKSEELYI 417
S ++ +Y+
Sbjct: 550 RSGNTDVVYL 559