BP915474 [AcEST]

BP915474
Clone id	YMU001_000072_A07
Library	YMU01
Length	421
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000072_A07.
Accession	BP915474
Tissue type	prothallium
Developmental stage	-
Contig ID	CL807Contig1
Sequence	TGGCACATGGTTGATGCCCATTATATATGCATTTTGGCGAGCACTTTCAACTGCCGGTAA GCTCTCTAGAGAGCATTGTTTTCGCATTGATCAAGTTTCCGGATTGCAAATCTTTGGGCG TTTGCTTAATGCGCAGTCACTCCGTTGATGTACGTTGAGTGCGGATTGCCATTGTATGTG AAAATGTGGAGCCATTTTAGCATTTCTACTCATTGGCATTGAGTAGTGTTATGGTTTATG GTACAGATTGTACTTGAGTTTTTTGCTCAGTTTTCAGGGGAAATTCTGTCGGATTTTTCC CAGATTCTCGCCATAGTTTGTGATCGAGTGTGTACTCTCACTTTGACAGGTTTTGTCAGT TTGGACACAGTTTCGTGTATATGTATCCACTCTCGCAAGAGTGAGGAGTTGTATATCTTT C
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P0C6V5
Definition	sp\|P0C6V5\|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41)
Align length	43
Score (bit)	28.9
E-value	8.4
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915474\|Adiantum capillus-veneris mRNA, clone: YMU001_000072_A07. (421 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P0C6V5\|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious ... 29 8.4 sp\|P0C6Y3\|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectiou... 29 8.4 sp\|P60330\|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1 29 8.4 >sp\|P0C6V5\|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) GN=1a PE=3 SV=1 Length = 3953 Score = 28.9 bits (63), Expect = 8.4 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +3 Query: 57 VSSLESIVFALIKFPDCKSLGVCLMRSHSVDVRVRIAIVCEN 185 VSSL +++F+++K D + L V +++S V + IVC N Sbjct: 3552 VSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSN 3594 >sp\|P0C6Y3\|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) GN=rep PE=3 SV=1 Length = 6631 Score = 28.9 bits (63), Expect = 8.4 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +3 Query: 57 VSSLESIVFALIKFPDCKSLGVCLMRSHSVDVRVRIAIVCEN 185 VSSL +++F+++K D + L V +++S V + IVC N Sbjct: 3552 VSSLHALLFSMLKKIDSEKLNVLFDQANSGVVPLATVPIVCSN 3594 >sp\|P60330\|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1 Length = 2118 Score = 28.9 bits (63), Expect = 8.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 380 IHETVSKLTKPVKVRVHTRSQTMARI 303 +H T SKL P+ RVH R+QT ++ Sbjct: 1363 VHPTKSKLQVPLAPRVHRRAQTRLKV 1388
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A7MHE3
Definition	tr\|A7MHE3\|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobacter sakazakii (strain ATCC BAA-894)
Align length	72
Score (bit)	35.4
E-value	1.4
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP915474\|Adiantum capillus-veneris mRNA, clone: YMU001_000072_A07. (421 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A7MHE3\|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobac... 35 1.4 tr\|A9Y3F5\|A9Y3F5_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterob... 35 1.4 tr\|A9Y3E2\|A9Y3E2_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterob... 35 1.4 tr\|Q03WY1\|Q03WY1_LEUMM Glycyl-tRNA synthetase, beta subunit OS=L... 33 7.0 >tr\|A7MHE3\|A7MHE3_ENTS8 dTDP-glucose 4,6-dehydratase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_01178 PE=3 SV=1 Length = 359 Score = 35.4 bits (80), Expect = 1.4 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = -3 Query: 239 INHNTTQCQVEMLKWLHIFTYNGNPHSTYINGVTAHANAQRFAIRKLDQCENNALRA 60 INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68 Query: 59 YRQLKVLAKMHI 24 +++ + A MH+ Sbjct: 69 FKEHQPDAVMHL 80 >tr\|A9Y3F5\|A9Y3F5_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterobacter sakazakii GN=rmlB PE=4 SV=1 Length = 360 Score = 35.4 bits (80), Expect = 1.4 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = -3 Query: 239 INHNTTQCQVEMLKWLHIFTYNGNPHSTYINGVTAHANAQRFAIRKLDQCENNALRA 60 INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68 Query: 59 YRQLKVLAKMHI 24 +++ + A MH+ Sbjct: 69 FKEHQPDAVMHL 80 >tr\|A9Y3E2\|A9Y3E2_ENTSA dTDP-D-glucose-4,6-dehydratase OS=Enterobacter sakazakii GN=rmlB PE=4 SV=1 Length = 359 Score = 35.4 bits (80), Expect = 1.4 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = -3 Query: 239 INHNTTQCQVEMLKWLHIFTYNGNPHSTYINGVTAHANAQRFAIRKLDQCENNALRA 60 INH TQ + V + K TY GNP S A AN++R+A ++D C+ AL R Sbjct: 21 INH--TQDRVVNLDK----LTYAGNPESV------ASVANSERYAFEQVDICDRAALDRV 68 Query: 59 YRQLKVLAKMHI 24 +++ + A MH+ Sbjct: 69 FKEHQPDAVMHL 80 >tr\|Q03WY1\|Q03WY1_LEUMM Glycyl-tRNA synthetase, beta subunit OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=LEUM_1193 PE=4 SV=1 Length = 685 Score = 33.1 bits (74), Expect = 7.0 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +1 Query: 211 HWHVVLWFMVQIVLEFFAQFSGEILS-DFSQILAIVCDRVCTLTLTGFVSLDTVSCICI 387 +WH ++ VL FAQ GE+ + D + +L + DRV LTL V D VS Sbjct: 495 NWH-----IALKPVLTQFAQSQGEVAAADITAVLEFILDRVRKLTLDDGVRQDLVSAGVS 549 Query: 388 HSRKSEELYI 417 S ++ +Y+ Sbjct: 550 RSGNTDVVYL 559