BP915475
Clone id YMU001_000072_A08
Library
Length 272
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000072_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATCTTCATCATCCGAGTAAAATGAGTACACATCTTGGGCTTCTGCGAATGATTTCTTCT
ATATCAATGACCTTGTCACCAGTTCCCAGCATACTATACTTTGTGCTCTCTTGCTTGCAA
CATCAATGATCTCATTACTACCATTTTCCACCACAACACGATCAGCATTATCATGTGGCT
CCTCTGCTACGTCTTCCTCTGAGGGAGCTTTTCTAGGATCTAAAAGAAACTCTCTTGGCA
GGTAAACCATGTTATACTCGAGTGTAACAAAG
■■Homology search results ■■ -
sp_hit_id P31316
Definition sp|P31316|GSX2_MOUSE GS homeobox 2 OS=Mus musculus
Align length 33
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915475|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A08.
(259 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P31316|GSX2_MOUSE GS homeobox 2 OS=Mus musculus GN=Gsx2 PE=2 ... 31 1.7
sp|A1WCB1|ACEK_ACISJ Isocitrate dehydrogenase kinase/phosphatase... 29 6.3
sp|Q9BZM3|GSX2_HUMAN GS homeobox 2 OS=Homo sapiens GN=GSX2 PE=1 ... 29 6.3
sp|Q0KIC3|Y1531_DROME Uncharacterized protein CG31531 OS=Drosoph... 29 8.2
sp|Q9PRA1|Y044_UREPA Uncharacterized protein UU044 OS=Ureaplasma... 29 8.2
sp|P03985|TCC2_MOUSE T-cell receptor gamma chain C region C7.5 O... 29 8.2
sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7, chlor... 29 8.2
sp|Q5Z3Z6|RECF_NOCFA DNA replication and repair protein recF OS=... 29 8.2

>sp|P31316|GSX2_MOUSE GS homeobox 2 OS=Mus musculus GN=Gsx2 PE=2
SV=2
Length = 305

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3

Query: 63 SPVPSILYFVLSCLQHQ*SHYYHFPPQHDQHYH 161
SP P F C + +H++H PPQH H+H
Sbjct: 110 SPAPGDAQF---CPRVSHAHHHHHPPQHHHHHH 139


>sp|A1WCB1|ACEK_ACISJ Isocitrate dehydrogenase kinase/phosphatase
OS=Acidovorax sp. (strain JS42) GN=aceK PE=3 SV=1
Length = 609

Score = 29.3 bits (64), Expect = 6.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -2

Query: 252 TLEYNMVYLPREFLLDP------RKAPSEEDVAEEPHDNADRVVV 136
TLEY++V PRE D R APS+ ++++ D V++
Sbjct: 382 TLEYSLVAFPRERFSDELIEEIRRHAPSQIEISDRDGDGRQEVII 426


>sp|Q9BZM3|GSX2_HUMAN GS homeobox 2 OS=Homo sapiens GN=GSX2 PE=1
SV=1
Length = 304

Score = 29.3 bits (64), Expect = 6.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3

Query: 117 SHYYHFPPQHDQHYH 161
+H++H PPQH H+H
Sbjct: 125 AHHHHHPPQHHHHHH 139


>sp|Q0KIC3|Y1531_DROME Uncharacterized protein CG31531 OS=Drosophila
melanogaster GN=CG31531 PE=2 SV=1
Length = 1372

Score = 28.9 bits (63), Expect = 8.2
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2

Query: 201 RKAPSEEDVAEEPHDNADRVVVENGSNEIIDVASKRAQSIVCWELVTRSLI*K---KSFA 31
R+AP + +AEE D+ VE + IDV +K Q +++VT L+ K K+ +
Sbjct: 991 REAPKDIQLAEEDRKRMDQFAVEEMPCDKIDV-TKSPQPNTGFQIVTEDLVKKCDGKNIS 1049

Query: 30 EA 25
EA
Sbjct: 1050 EA 1051


>sp|Q9PRA1|Y044_UREPA Uncharacterized protein UU044 OS=Ureaplasma
parvum GN=UU044 PE=4 SV=1
Length = 782

Score = 28.9 bits (63), Expect = 8.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2

Query: 225 PREFLLDPRKAPSEEDVAEEPHDNADRVVVENGSN-EIIDVASKRAQSIV 79
P+E LL P P +E+ EP+ V N SN II++ R ++ V
Sbjct: 138 PKEELLPPNPPPPKEEPKPEPNPQPQPQQVPNNSNSRIIEINGVRVEAEV 187


>sp|P03985|TCC2_MOUSE T-cell receptor gamma chain C region C7.5
OS=Mus musculus PE=2 SV=1
Length = 172

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2

Query: 17 TSWASANDFFYINDLVTSSQHTILCALLLATSMISLLPFSTTTR 148
T W ND + +TS+ +T L LL + ++++ FS R
Sbjct: 119 TCWQDKNDVLQLQFTITSAYYTYLLLLLKSVIYLAIISFSLLRR 162


>sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7,
chloroplastic OS=Arabidopsis thaliana GN=SNT7 PE=1 SV=1
Length = 562

Score = 28.9 bits (63), Expect = 8.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2

Query: 249 LEYNMVYLPREFLLDPRKAPSEE 181
L + Y+P+EFLLDPR A E+
Sbjct: 305 LRVGINYIPKEFLLDPRYAAPEQ 327


>sp|Q5Z3Z6|RECF_NOCFA DNA replication and repair protein recF
OS=Nocardia farcinica GN=recF PE=3 SV=1
Length = 388

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2

Query: 243 YNMVYLPREFLLDPRKAPSEEDVA 172
Y YLP EFL DP +AP ++D A
Sbjct: 228 YRSAYLPGEFL-DPARAPRDDDAA 250


tr_hit_id B2AC97
Definition tr|B2AC97|B2AC97_PODAN Predicted CDS Pa_3_320 OS=Podospora anserina
Align length 58
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915475|Adiantum capillus-veneris mRNA, clone:
YMU001_000072_A08.
(259 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2AC97|B2AC97_PODAN Predicted CDS Pa_3_320 OS=Podospora anser... 33 7.1

>tr|B2AC97|B2AC97_PODAN Predicted CDS Pa_3_320 OS=Podospora anserina
PE=4 SV=1
Length = 967

Score = 33.1 bits (74), Expect = 7.1
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -2

Query: 192 PSEEDVAEEPHDNADRVVVENGSNEIIDVASKRAQSIVCWELVTRSLI*KKSFAEAQD 19
P+ + + P + +R VV+ I+ + + R++ WEL+TR + K+ FA A D
Sbjct: 809 PAGTGIYDPPRGSTERAVVQFLETSIVPLTTARSEF---WELITRERVWKRDFAGAID 863